EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAPLG00000010287 (Gene tree)
Gene ID: 101798229
Gene Symbol: UPF2
Alias: -
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Anas_platyrhynchos
Status: putative
Strand: Minus strand
Length: 48350 bases
Position: chrKB742435.1:1916825-1965174
Accession: 101798229
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAPLP00000010052	Upf2	PF04050.14	1.1e-33	1	1
ENSAPLP00000010052	MIF4G	PF02854.19	6.5e-80	1	3
ENSAPLP00000010052	MIF4G	PF02854.19	6.5e-80	2	3
ENSAPLP00000010052	MIF4G	PF02854.19	6.5e-80	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAPLT00000010758	UPF2-201	3771	XM_005009649	ENSAPLP00000010052	1256 (aa)	XP_005009709	U3IS29

Gene Model

Click here to download ENSAPLG00000010287's gene model file

Pathways

Pathway ID	Pathway Name	Source
apla03013	RNA transport	KEGG
apla03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAPLG00000010287's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAPLG00000010287	UPF2	100	86.085	ENSG00000151461	UPF2	100	86.557	Homo_sapiens
ENSAPLG00000010287	UPF2	90	81.842	ENSAPOG00000015837	UPF2	100	77.356	Acanthochromis_polyacanthus
ENSAPLG00000010287	UPF2	90	91.573	ENSAMEG00000004586	UPF2	100	87.186	Ailuropoda_melanoleuca
ENSAPLG00000010287	UPF2	90	83.665	ENSACIG00000018078	UPF2	100	79.082	Amphilophus_citrinellus
ENSAPLG00000010287	UPF2	90	84.851	ENSAOCG00000016766	UPF2	100	79.763	Amphiprion_ocellaris
ENSAPLG00000010287	UPF2	90	84.939	ENSAPEG00000019084	UPF2	100	79.842	Amphiprion_percula
ENSAPLG00000010287	UPF2	90	83.133	ENSATEG00000021677	UPF2	99	78.837	Anabas_testudineus
ENSAPLG00000010287	UPF2	90	92.007	ENSACAG00000009259	UPF2	100	87.500	Anolis_carolinensis
ENSAPLG00000010287	UPF2	99	78.774	ENSANAG00000028451	UPF2	99	79.483	Aotus_nancymaae
ENSAPLG00000010287	UPF2	90	83.434	ENSACLG00000012696	UPF2	100	78.710	Astatotilapia_calliptera
ENSAPLG00000010287	UPF2	91	82.635	ENSAMXG00000013700	UPF2	99	79.515	Astyanax_mexicanus
ENSAPLG00000010287	UPF2	90	91.486	ENSBTAG00000000288	UPF2	100	97.802	Bos_taurus
ENSAPLG00000010287	UPF2	90	91.225	ENSCJAG00000020685	UPF2	100	86.557	Callithrix_jacchus
ENSAPLG00000010287	UPF2	90	91.573	ENSCAFG00000004839	UPF2	100	87.186	Canis_familiaris
ENSAPLG00000010287	UPF2	90	91.792	ENSCAFG00020005882	UPF2	100	86.842	Canis_lupus_dingo
ENSAPLG00000010287	UPF2	90	91.645	ENSCHIG00000020359	UPF2	100	87.186	Capra_hircus
ENSAPLG00000010287	UPF2	100	86.399	ENSTSYG00000000935	UPF2	100	87.107	Carlito_syrichta
ENSAPLG00000010287	UPF2	90	80.244	ENSCAPG00000016658	UPF2	99	74.488	Cavia_aperea
ENSAPLG00000010287	UPF2	90	89.208	ENSCPOG00000008809	UPF2	100	84.956	Cavia_porcellus
ENSAPLG00000010287	UPF2	90	86.063	ENSCCAG00000035991	UPF2	100	81.211	Cebus_capucinus
ENSAPLG00000010287	UPF2	100	86.321	ENSCATG00000032679	UPF2	100	86.792	Cercocebus_atys
ENSAPLG00000010287	UPF2	90	90.704	ENSCLAG00000011434	UPF2	100	86.399	Chinchilla_lanigera
ENSAPLG00000010287	UPF2	100	86.321	ENSCSAG00000013372	UPF2	100	86.792	Chlorocebus_sabaeus
ENSAPLG00000010287	UPF2	80	95.759	ENSCHOG00000000422	UPF2	89	95.759	Choloepus_hoffmanni
ENSAPLG00000010287	UPF2	99	88.165	ENSCPBG00000027823	UPF2	100	89.213	Chrysemys_picta_bellii
ENSAPLG00000010287	UPF2	78	48.580	ENSCSAVG00000007772	-	99	47.911	Ciona_savignyi
ENSAPLG00000010287	UPF2	99	82.873	ENSCANG00000040396	UPF2	100	82.819	Colobus_angolensis_palliatus
ENSAPLG00000010287	UPF2	90	91.652	ENSCGRG00001019347	Upf2	100	87.175	Cricetulus_griseus_chok1gshd
ENSAPLG00000010287	UPF2	90	91.652	ENSCGRG00000017993	Upf2	100	87.175	Cricetulus_griseus_crigri
ENSAPLG00000010287	UPF2	90	82.146	ENSCSEG00000003520	UPF2	99	77.193	Cynoglossus_semilaevis
ENSAPLG00000010287	UPF2	90	83.162	ENSCVAG00000006167	UPF2	100	78.980	Cyprinodon_variegatus
ENSAPLG00000010287	UPF2	90	91.225	ENSDNOG00000018160	UPF2	100	86.950	Dasypus_novemcinctus
ENSAPLG00000010287	UPF2	90	91.043	ENSDORG00000002478	Upf2	100	86.703	Dipodomys_ordii
ENSAPLG00000010287	UPF2	89	36.689	FBgn0029992	Upf2	95	36.401	Drosophila_melanogaster
ENSAPLG00000010287	UPF2	55	98.529	ENSETEG00000011583	-	72	98.529	Echinops_telfairi
ENSAPLG00000010287	UPF2	65	74.497	ENSEBUG00000012448	-	87	73.154	Eptatretus_burgeri
ENSAPLG00000010287	UPF2	90	91.138	ENSEASG00005019274	UPF2	100	86.792	Equus_asinus_asinus
ENSAPLG00000010287	UPF2	90	91.138	ENSECAG00000017022	UPF2	100	86.871	Equus_caballus
ENSAPLG00000010287	UPF2	72	81.549	ENSEEUG00000007819	UPF2	82	79.553	Erinaceus_europaeus
ENSAPLG00000010287	UPF2	99	77.682	ENSELUG00000012014	UPF2	100	78.123	Esox_lucius
ENSAPLG00000010287	UPF2	90	95.580	ENSFCAG00000005785	UPF2	92	96.067	Felis_catus
ENSAPLG00000010287	UPF2	90	94.266	ENSFALG00000001889	UPF2	98	90.652	Ficedula_albicollis
ENSAPLG00000010287	UPF2	90	91.043	ENSFDAG00000014348	UPF2	100	86.467	Fukomys_damarensis
ENSAPLG00000010287	UPF2	90	83.004	ENSFHEG00000009826	UPF2	100	78.824	Fundulus_heteroclitus
ENSAPLG00000010287	UPF2	90	82.317	ENSGMOG00000005557	UPF2	100	77.621	Gadus_morhua
ENSAPLG00000010287	UPF2	90	95.052	ENSGALG00000033772	UPF2	100	91.444	Gallus_gallus
ENSAPLG00000010287	UPF2	90	83.290	ENSGAFG00000020867	UPF2	100	78.305	Gambusia_affinis
ENSAPLG00000010287	UPF2	90	81.771	ENSGACG00000001080	UPF2	100	78.237	Gasterosteus_aculeatus
ENSAPLG00000010287	UPF2	90	92.528	ENSGAGG00000002700	UPF2	100	88.758	Gopherus_agassizii
ENSAPLG00000010287	UPF2	100	86.085	ENSGGOG00000001479	UPF2	100	86.557	Gorilla_gorilla
ENSAPLG00000010287	UPF2	90	83.492	ENSHBUG00000004249	UPF2	100	78.833	Haplochromis_burtoni
ENSAPLG00000010287	UPF2	90	80.940	ENSHGLG00000003822	-	99	77.044	Heterocephalus_glaber_female
ENSAPLG00000010287	UPF2	90	90.877	ENSHGLG00000015176	-	100	86.006	Heterocephalus_glaber_female
ENSAPLG00000010287	UPF2	87	90.647	ENSHGLG00100010036	UPF2	100	84.066	Heterocephalus_glaber_male
ENSAPLG00000010287	UPF2	90	81.952	ENSHCOG00000004025	UPF2	99	77.019	Hippocampus_comes
ENSAPLG00000010287	UPF2	91	83.090	ENSIPUG00000015524	UPF2	100	78.237	Ictalurus_punctatus
ENSAPLG00000010287	UPF2	90	91.739	ENSSTOG00000013075	UPF2	100	87.254	Ictidomys_tridecemlineatus
ENSAPLG00000010287	UPF2	90	90.949	ENSJJAG00000004913	Upf2	100	86.378	Jaculus_jaculus
ENSAPLG00000010287	UPF2	90	82.889	ENSKMAG00000001071	UPF2	100	78.683	Kryptolebias_marmoratus
ENSAPLG00000010287	UPF2	71	86.002	ENSLBEG00000000728	-	93	78.613	Labrus_bergylta
ENSAPLG00000010287	UPF2	90	84.609	ENSLBEG00000016394	-	100	79.022	Labrus_bergylta
ENSAPLG00000010287	UPF2	90	80.328	ENSLACG00000015945	UPF2	100	76.351	Latimeria_chalumnae
ENSAPLG00000010287	UPF2	90	86.419	ENSLOCG00000015698	UPF2	100	82.533	Lepisosteus_oculatus
ENSAPLG00000010287	UPF2	100	86.242	ENSMFAG00000043865	UPF2	100	86.714	Macaca_fascicularis
ENSAPLG00000010287	UPF2	100	86.242	ENSMMUG00000008241	UPF2	100	86.714	Macaca_mulatta
ENSAPLG00000010287	UPF2	81	88.149	ENSMNEG00000008062	UPF2	99	88.149	Macaca_nemestrina
ENSAPLG00000010287	UPF2	99	85.940	ENSMLEG00000036120	UPF2	100	87.440	Mandrillus_leucophaeus
ENSAPLG00000010287	UPF2	90	85.013	ENSMAMG00000018276	UPF2	100	80.079	Mastacembelus_armatus
ENSAPLG00000010287	UPF2	90	83.348	ENSMZEG00005021595	UPF2	100	78.710	Maylandia_zebra
ENSAPLG00000010287	UPF2	90	93.745	ENSMGAG00000004573	UPF2	99	90.259	Meleagris_gallopavo
ENSAPLG00000010287	UPF2	90	89.130	ENSMAUG00000016512	Upf2	100	84.894	Mesocricetus_auratus
ENSAPLG00000010287	UPF2	99	86.124	ENSMICG00000001716	UPF2	100	86.523	Microcebus_murinus
ENSAPLG00000010287	UPF2	90	91.478	ENSMOCG00000008263	Upf2	100	86.703	Microtus_ochrogaster
ENSAPLG00000010287	UPF2	90	84.317	ENSMMOG00000006528	UPF2	100	79.193	Mola_mola
ENSAPLG00000010287	UPF2	90	92.007	ENSMODG00000016794	UPF2	100	87.402	Monodelphis_domestica
ENSAPLG00000010287	UPF2	90	83.871	ENSMALG00000002663	UPF2	100	79.117	Monopterus_albus
ENSAPLG00000010287	UPF2	100	86.231	MGP_CAROLIEiJ_G0023157	Upf2	99	91.601	Mus_caroli
ENSAPLG00000010287	UPF2	100	86.546	ENSMUSG00000043241	Upf2	99	89.101	Mus_musculus
ENSAPLG00000010287	UPF2	90	91.130	MGP_PahariEiJ_G0019217	Upf2	100	89.101	Mus_pahari
ENSAPLG00000010287	UPF2	100	86.782	MGP_SPRETEiJ_G0024075	Upf2	100	89.101	Mus_spretus
ENSAPLG00000010287	UPF2	90	91.573	ENSMPUG00000001064	UPF2	100	87.186	Mustela_putorius_furo
ENSAPLG00000010287	UPF2	90	90.720	ENSMLUG00000000228	UPF2	100	86.499	Myotis_lucifugus
ENSAPLG00000010287	UPF2	90	83.348	ENSNBRG00000013629	UPF2	100	78.710	Neolamprologus_brichardi
ENSAPLG00000010287	UPF2	100	86.085	ENSNLEG00000012058	UPF2	100	86.557	Nomascus_leucogenys
ENSAPLG00000010287	UPF2	57	100.000	ENSMEUG00000002180	-	55	100.000	Notamacropus_eugenii
ENSAPLG00000010287	UPF2	76	98.592	ENSOPRG00000006801	-	78	98.592	Ochotona_princeps
ENSAPLG00000010287	UPF2	90	90.791	ENSODEG00000001290	UPF2	100	86.399	Octodon_degus
ENSAPLG00000010287	UPF2	90	83.607	ENSONIG00000017991	UPF2	100	78.710	Oreochromis_niloticus
ENSAPLG00000010287	UPF2	91	91.421	ENSOCUG00000006230	UPF2	100	87.559	Oryctolagus_cuniculus
ENSAPLG00000010287	UPF2	90	82.975	ENSORLG00000017189	UPF2	100	78.488	Oryzias_latipes
ENSAPLG00000010287	UPF2	90	83.061	ENSORLG00020005969	UPF2	100	78.644	Oryzias_latipes_hni
ENSAPLG00000010287	UPF2	90	82.975	ENSORLG00015005713	UPF2	100	78.566	Oryzias_latipes_hsok
ENSAPLG00000010287	UPF2	90	79.690	ENSOMEG00000023420	UPF2	98	75.741	Oryzias_melastigma
ENSAPLG00000010287	UPF2	91	90.768	ENSOGAG00000005796	UPF2	100	86.950	Otolemur_garnettii
ENSAPLG00000010287	UPF2	90	91.327	ENSOARG00000014587	UPF2	100	87.049	Ovis_aries
ENSAPLG00000010287	UPF2	99	83.803	ENSPPAG00000037953	UPF2	100	85.103	Pan_paniscus
ENSAPLG00000010287	UPF2	90	92.007	ENSPPRG00000000690	UPF2	100	87.264	Panthera_pardus
ENSAPLG00000010287	UPF2	90	92.007	ENSPTIG00000008867	UPF2	100	87.264	Panthera_tigris_altaica
ENSAPLG00000010287	UPF2	100	86.085	ENSPTRG00000002291	UPF2	100	86.557	Pan_troglodytes
ENSAPLG00000010287	UPF2	100	86.321	ENSPANG00000023399	UPF2	100	86.792	Papio_anubis
ENSAPLG00000010287	UPF2	90	82.302	ENSPKIG00000025502	UPF2	100	78.521	Paramormyrops_kingsleyae
ENSAPLG00000010287	UPF2	50	96.367	ENSPSIG00000015158	UPF2	95	88.742	Pelodiscus_sinensis
ENSAPLG00000010287	UPF2	90	82.771	ENSPMGG00000005259	UPF2	100	77.500	Periophthalmus_magnuspinnatus
ENSAPLG00000010287	UPF2	83	95.516	ENSPEMG00000015731	Upf2	99	76.744	Peromyscus_maniculatus_bairdii
ENSAPLG00000010287	UPF2	90	92.167	ENSPCIG00000006656	UPF2	100	87.539	Phascolarctos_cinereus
ENSAPLG00000010287	UPF2	90	83.046	ENSPFOG00000017118	UPF2	100	78.460	Poecilia_formosa
ENSAPLG00000010287	UPF2	90	83.004	ENSPLAG00000005094	UPF2	100	78.460	Poecilia_latipinna
ENSAPLG00000010287	UPF2	90	83.004	ENSPMEG00000017009	UPF2	100	78.460	Poecilia_mexicana
ENSAPLG00000010287	UPF2	90	83.695	ENSPREG00000021880	UPF2	100	78.471	Poecilia_reticulata
ENSAPLG00000010287	UPF2	65	89.474	ENSPPYG00000002089	-	100	90.191	Pongo_abelii
ENSAPLG00000010287	UPF2	90	80.900	ENSPCAG00000000684	UPF2	91	81.451	Procavia_capensis
ENSAPLG00000010287	UPF2	90	90.909	ENSPCOG00000021656	UPF2	100	86.204	Propithecus_coquereli
ENSAPLG00000010287	UPF2	90	83.420	ENSPVAG00000017286	UPF2	100	79.969	Pteropus_vampyrus
ENSAPLG00000010287	UPF2	90	80.726	ENSPNYG00000017096	UPF2	100	76.809	Pundamilia_nyererei
ENSAPLG00000010287	UPF2	91	82.750	ENSPNAG00000009357	UPF2	100	79.969	Pygocentrus_nattereri
ENSAPLG00000010287	UPF2	90	86.123	ENSRNOG00000023593	Upf2	100	97.778	Rattus_norvegicus
ENSAPLG00000010287	UPF2	99	85.500	ENSRBIG00000037780	UPF2	100	86.210	Rhinopithecus_bieti
ENSAPLG00000010287	UPF2	100	86.625	ENSRROG00000043547	UPF2	100	86.861	Rhinopithecus_roxellana
ENSAPLG00000010287	UPF2	90	91.391	ENSSBOG00000020012	UPF2	100	86.546	Saimiri_boliviensis_boliviensis
ENSAPLG00000010287	UPF2	90	84.224	ENSSFOG00015023788	upf2	100	79.283	Scleropages_formosus
ENSAPLG00000010287	UPF2	90	81.558	ENSSMAG00000007637	UPF2	100	77.227	Scophthalmus_maximus
ENSAPLG00000010287	UPF2	90	84.609	ENSSDUG00000017244	UPF2	100	79.968	Seriola_dumerili
ENSAPLG00000010287	UPF2	90	84.697	ENSSLDG00000016866	UPF2	100	80.048	Seriola_lalandi_dorsalis
ENSAPLG00000010287	UPF2	91	89.819	ENSSARG00000008615	UPF2	100	85.928	Sorex_araneus
ENSAPLG00000010287	UPF2	91	89.667	ENSSPUG00000014544	UPF2	99	85.408	Sphenodon_punctatus
ENSAPLG00000010287	UPF2	68	90.196	ENSSSCG00000011117	-	100	90.679	Sus_scrofa
ENSAPLG00000010287	UPF2	90	94.338	ENSTGUG00000002163	-	100	90.315	Taeniopygia_guttata
ENSAPLG00000010287	UPF2	90	82.373	ENSTRUG00000007519	UPF2	99	78.098	Takifugu_rubripes
ENSAPLG00000010287	UPF2	100	77.350	ENSTNIG00000004453	UPF2	100	77.761	Tetraodon_nigroviridis
ENSAPLG00000010287	UPF2	83	83.585	ENSTBEG00000012679	UPF2	93	79.255	Tupaia_belangeri
ENSAPLG00000010287	UPF2	90	91.138	ENSTTRG00000016388	UPF2	100	86.871	Tursiops_truncatus
ENSAPLG00000010287	UPF2	83	97.222	ENSUAMG00000023560	UPF2	97	100.000	Ursus_americanus
ENSAPLG00000010287	UPF2	90	91.486	ENSUMAG00000012953	UPF2	95	87.107	Ursus_maritimus
ENSAPLG00000010287	UPF2	74	96.774	ENSVPAG00000006763	UPF2	84	96.774	Vicugna_pacos
ENSAPLG00000010287	UPF2	90	91.486	ENSVVUG00000006166	UPF2	100	87.107	Vulpes_vulpes
ENSAPLG00000010287	UPF2	100	82.003	ENSXETG00000033103	UPF2	100	82.081	Xenopus_tropicalis
ENSAPLG00000010287	UPF2	90	82.803	ENSXCOG00000011604	UPF2	100	78.349	Xiphophorus_couchianus
ENSAPLG00000010287	UPF2	90	82.833	ENSXMAG00000017209	UPF2	100	78.149	Xiphophorus_maculatus