EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAPLG00000012594 (Gene tree)
Gene ID: -
Gene Symbol: LSM6
Alias: -
Full Name: LSM6 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Anas_platyrhynchos
Status: putative
Strand: Plus strand
Length: 4560 bases
Position: chrKB742733.1:1302442-1307001
Accession: 101800680
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAPLP00000012384	LSM	PF01423.22	7e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAPLT00000013122	LSM6-201	367	XM_005014704	ENSAPLP00000012384	78 (aa)	XP_012950315	U3IYQ8

Gene Model

Click here to download ENSAPLG00000012594's gene model file

Pathways

Pathway ID	Pathway Name	Source
apla03018	RNA degradation	KEGG
apla03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAPLG00000012594's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAPLG00000012594	LSM6	79	46.774	ENSAPLG00000004012	-	72	46.774

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAPLG00000012594	LSM6	99	100.000	ENSG00000164167	LSM6	96	100.000	Homo_sapiens
ENSAPLG00000012594	LSM6	99	94.805	ENSAPOG00000019832	lsm6	96	94.805	Acanthochromis_polyacanthus
ENSAPLG00000012594	LSM6	99	100.000	ENSAMEG00000016671	LSM6	96	100.000	Ailuropoda_melanoleuca
ENSAPLG00000012594	LSM6	99	94.805	ENSACIG00000016711	lsm6	96	94.805	Amphilophus_citrinellus
ENSAPLG00000012594	LSM6	99	94.805	ENSAOCG00000002110	lsm6	50	94.805	Amphiprion_ocellaris
ENSAPLG00000012594	LSM6	99	94.805	ENSAPEG00000023992	lsm6	96	94.805	Amphiprion_percula
ENSAPLG00000012594	LSM6	99	94.805	ENSATEG00000012610	lsm6	96	94.805	Anabas_testudineus
ENSAPLG00000012594	LSM6	99	100.000	ENSACAG00000004004	LSM6	96	100.000	Anolis_carolinensis
ENSAPLG00000012594	LSM6	99	85.714	ENSANAG00000021839	-	96	85.714	Aotus_nancymaae
ENSAPLG00000012594	LSM6	99	100.000	ENSANAG00000030568	-	96	100.000	Aotus_nancymaae
ENSAPLG00000012594	LSM6	99	94.805	ENSACLG00000025621	lsm6	96	94.805	Astatotilapia_calliptera
ENSAPLG00000012594	LSM6	99	96.104	ENSAMXG00000038738	lsm6	96	96.104	Astyanax_mexicanus
ENSAPLG00000012594	LSM6	99	100.000	ENSBTAG00000014060	LSM6	96	100.000	Bos_taurus
ENSAPLG00000012594	LSM6	97	94.737	ENSBTAG00000052085	-	95	94.737	Bos_taurus
ENSAPLG00000012594	LSM6	96	81.333	WBGene00003080	lsm-6	97	81.333	Caenorhabditis_elegans
ENSAPLG00000012594	LSM6	99	100.000	ENSCJAG00000002482	LSM6	96	100.000	Callithrix_jacchus
ENSAPLG00000012594	LSM6	99	100.000	ENSCAFG00000007738	LSM6	96	100.000	Canis_familiaris
ENSAPLG00000012594	LSM6	99	100.000	ENSCAFG00020025902	LSM6	96	100.000	Canis_lupus_dingo
ENSAPLG00000012594	LSM6	99	100.000	ENSCHIG00000010334	-	96	100.000	Capra_hircus
ENSAPLG00000012594	LSM6	87	100.000	ENSCHIG00000012864	-	96	100.000	Capra_hircus
ENSAPLG00000012594	LSM6	99	84.416	ENSCHIG00000024198	-	91	84.416	Capra_hircus
ENSAPLG00000012594	LSM6	99	100.000	ENSTSYG00000026972	LSM6	96	100.000	Carlito_syrichta
ENSAPLG00000012594	LSM6	96	84.000	ENSTSYG00000012759	-	89	84.000	Carlito_syrichta
ENSAPLG00000012594	LSM6	99	100.000	ENSCAPG00000008104	LSM6	96	100.000	Cavia_aperea
ENSAPLG00000012594	LSM6	79	96.774	ENSCAPG00000011179	-	95	96.774	Cavia_aperea
ENSAPLG00000012594	LSM6	99	100.000	ENSCPOG00000032655	LSM6	96	100.000	Cavia_porcellus
ENSAPLG00000012594	LSM6	99	100.000	ENSCCAG00000036437	LSM6	96	100.000	Cebus_capucinus
ENSAPLG00000012594	LSM6	97	98.684	ENSCCAG00000020665	-	95	98.684	Cebus_capucinus
ENSAPLG00000012594	LSM6	99	100.000	ENSCATG00000002770	-	96	100.000	Cercocebus_atys
ENSAPLG00000012594	LSM6	97	72.368	ENSCATG00000038799	-	94	72.368	Cercocebus_atys
ENSAPLG00000012594	LSM6	99	100.000	ENSCLAG00000005495	LSM6	96	100.000	Chinchilla_lanigera
ENSAPLG00000012594	LSM6	86	82.090	ENSCLAG00000005685	-	94	82.090	Chinchilla_lanigera
ENSAPLG00000012594	LSM6	99	100.000	ENSCSAG00000003421	LSM6	96	100.000	Chlorocebus_sabaeus
ENSAPLG00000012594	LSM6	99	77.922	ENSCHOG00000003420	LSM6	95	77.922	Choloepus_hoffmanni
ENSAPLG00000012594	LSM6	99	100.000	ENSCPBG00000027472	LSM6	81	100.000	Chrysemys_picta_bellii
ENSAPLG00000012594	LSM6	97	96.053	ENSCING00000019152	-	93	96.053	Ciona_intestinalis
ENSAPLG00000012594	LSM6	97	97.368	ENSCSAVG00000002065	-	93	97.368	Ciona_savignyi
ENSAPLG00000012594	LSM6	99	70.130	ENSCANG00000035214	-	96	70.130	Colobus_angolensis_palliatus
ENSAPLG00000012594	LSM6	99	100.000	ENSCANG00000041263	-	96	100.000	Colobus_angolensis_palliatus
ENSAPLG00000012594	LSM6	99	100.000	ENSCANG00000006849	-	96	100.000	Colobus_angolensis_palliatus
ENSAPLG00000012594	LSM6	99	100.000	ENSCGRG00001017142	Lsm6	96	100.000	Cricetulus_griseus_chok1gshd
ENSAPLG00000012594	LSM6	99	100.000	ENSCGRG00000008320	Lsm6	96	100.000	Cricetulus_griseus_crigri
ENSAPLG00000012594	LSM6	99	94.805	ENSCSEG00000000423	lsm6	96	94.805	Cynoglossus_semilaevis
ENSAPLG00000012594	LSM6	99	94.805	ENSCVAG00000001592	lsm6	96	94.805	Cyprinodon_variegatus
ENSAPLG00000012594	LSM6	99	96.104	ENSDARG00000036995	lsm6	96	96.104	Danio_rerio
ENSAPLG00000012594	LSM6	85	100.000	ENSDNOG00000040186	-	71	100.000	Dasypus_novemcinctus
ENSAPLG00000012594	LSM6	99	98.701	ENSDNOG00000044848	-	96	98.701	Dasypus_novemcinctus
ENSAPLG00000012594	LSM6	99	100.000	ENSDORG00000000933	Lsm6	96	100.000	Dipodomys_ordii
ENSAPLG00000012594	LSM6	99	85.714	FBgn0034564	CG9344	97	85.714	Drosophila_melanogaster
ENSAPLG00000012594	LSM6	62	100.000	ENSETEG00000013098	LSM6	100	100.000	Echinops_telfairi
ENSAPLG00000012594	LSM6	99	98.701	ENSEBUG00000017073	lsm6	96	98.701	Eptatretus_burgeri
ENSAPLG00000012594	LSM6	85	100.000	ENSEASG00005001533	LSM6	69	100.000	Equus_asinus_asinus
ENSAPLG00000012594	LSM6	99	100.000	ENSECAG00000021036	LSM6	96	100.000	Equus_caballus
ENSAPLG00000012594	LSM6	99	71.429	ENSEEUG00000002101	LSM6	97	71.429	Erinaceus_europaeus
ENSAPLG00000012594	LSM6	99	96.104	ENSELUG00000014301	LSM6	96	96.104	Esox_lucius
ENSAPLG00000012594	LSM6	99	100.000	ENSFCAG00000003047	LSM6	96	100.000	Felis_catus
ENSAPLG00000012594	LSM6	99	100.000	ENSFALG00000005509	LSM6	89	100.000	Ficedula_albicollis
ENSAPLG00000012594	LSM6	99	100.000	ENSFDAG00000020913	-	96	100.000	Fukomys_damarensis
ENSAPLG00000012594	LSM6	99	87.013	ENSFDAG00000019073	-	96	87.013	Fukomys_damarensis
ENSAPLG00000012594	LSM6	99	94.805	ENSFHEG00000007948	lsm6	96	94.805	Fundulus_heteroclitus
ENSAPLG00000012594	LSM6	99	94.805	ENSGMOG00000015550	lsm6	96	94.805	Gadus_morhua
ENSAPLG00000012594	LSM6	99	100.000	ENSGALG00000009985	LSM6	96	100.000	Gallus_gallus
ENSAPLG00000012594	LSM6	99	94.805	ENSGAFG00000017763	lsm6	96	94.805	Gambusia_affinis
ENSAPLG00000012594	LSM6	97	96.053	ENSGACG00000017223	lsm6	95	96.053	Gasterosteus_aculeatus
ENSAPLG00000012594	LSM6	99	100.000	ENSGAGG00000020980	LSM6	96	100.000	Gopherus_agassizii
ENSAPLG00000012594	LSM6	99	100.000	ENSGGOG00000001310	LSM6	96	100.000	Gorilla_gorilla
ENSAPLG00000012594	LSM6	99	94.805	ENSHBUG00000008618	lsm6	96	94.805	Haplochromis_burtoni
ENSAPLG00000012594	LSM6	99	100.000	ENSHGLG00000000205	LSM6	96	100.000	Heterocephalus_glaber_female
ENSAPLG00000012594	LSM6	99	100.000	ENSHGLG00100014341	LSM6	96	100.000	Heterocephalus_glaber_male
ENSAPLG00000012594	LSM6	99	94.805	ENSHCOG00000005591	lsm6	96	94.805	Hippocampus_comes
ENSAPLG00000012594	LSM6	99	96.104	ENSIPUG00000004508	lsm6	96	96.104	Ictalurus_punctatus
ENSAPLG00000012594	LSM6	99	100.000	ENSSTOG00000002678	LSM6	96	100.000	Ictidomys_tridecemlineatus
ENSAPLG00000012594	LSM6	99	90.909	ENSJJAG00000011211	-	96	90.909	Jaculus_jaculus
ENSAPLG00000012594	LSM6	99	100.000	ENSJJAG00000013845	-	96	100.000	Jaculus_jaculus
ENSAPLG00000012594	LSM6	99	79.221	ENSJJAG00000016942	-	97	79.221	Jaculus_jaculus
ENSAPLG00000012594	LSM6	99	94.805	ENSKMAG00000004105	lsm6	96	94.805	Kryptolebias_marmoratus
ENSAPLG00000012594	LSM6	99	94.805	ENSLBEG00000018441	lsm6	96	94.805	Labrus_bergylta
ENSAPLG00000012594	LSM6	99	100.000	ENSLACG00000006937	LSM6	96	100.000	Latimeria_chalumnae
ENSAPLG00000012594	LSM6	99	94.805	ENSLOCG00000017683	-	96	94.805	Lepisosteus_oculatus
ENSAPLG00000012594	LSM6	99	96.104	ENSLOCG00000008852	lsm6	96	96.104	Lepisosteus_oculatus
ENSAPLG00000012594	LSM6	99	100.000	ENSLAFG00000001952	LSM6	96	100.000	Loxodonta_africana
ENSAPLG00000012594	LSM6	99	100.000	ENSMFAG00000033073	LSM6	96	100.000	Macaca_fascicularis
ENSAPLG00000012594	LSM6	99	100.000	ENSMNEG00000034820	-	96	100.000	Macaca_nemestrina
ENSAPLG00000012594	LSM6	99	72.727	ENSMNEG00000040412	-	96	72.727	Macaca_nemestrina
ENSAPLG00000012594	LSM6	99	100.000	ENSMLEG00000035153	LSM6	96	100.000	Mandrillus_leucophaeus
ENSAPLG00000012594	LSM6	99	94.805	ENSMAMG00000014029	lsm6	96	94.805	Mastacembelus_armatus
ENSAPLG00000012594	LSM6	99	94.805	ENSMZEG00005009146	lsm6	96	94.805	Maylandia_zebra
ENSAPLG00000012594	LSM6	99	100.000	ENSMGAG00000003802	LSM6	96	100.000	Meleagris_gallopavo
ENSAPLG00000012594	LSM6	99	100.000	ENSMAUG00000014938	Lsm6	96	100.000	Mesocricetus_auratus
ENSAPLG00000012594	LSM6	99	100.000	ENSMICG00000042599	LSM6	96	100.000	Microcebus_murinus
ENSAPLG00000012594	LSM6	96	90.667	ENSMICG00000047411	-	88	90.667	Microcebus_murinus
ENSAPLG00000012594	LSM6	99	100.000	ENSMOCG00000020049	Lsm6	96	100.000	Microtus_ochrogaster
ENSAPLG00000012594	LSM6	99	88.312	ENSMMOG00000007379	-	96	88.312	Mola_mola
ENSAPLG00000012594	LSM6	99	94.805	ENSMMOG00000005470	lsm6	96	94.805	Mola_mola
ENSAPLG00000012594	LSM6	99	100.000	ENSMODG00000000526	LSM6	96	100.000	Monodelphis_domestica
ENSAPLG00000012594	LSM6	99	94.805	ENSMALG00000002419	lsm6	96	94.805	Monopterus_albus
ENSAPLG00000012594	LSM6	99	100.000	MGP_CAROLIEiJ_G0031245	Lsm6	96	100.000	Mus_caroli
ENSAPLG00000012594	LSM6	99	100.000	ENSMUSG00000031683	Lsm6	96	100.000	Mus_musculus
ENSAPLG00000012594	LSM6	99	100.000	MGP_PahariEiJ_G0022851	Lsm6	96	100.000	Mus_pahari
ENSAPLG00000012594	LSM6	99	100.000	MGP_SPRETEiJ_G0032365	Lsm6	96	100.000	Mus_spretus
ENSAPLG00000012594	LSM6	97	100.000	ENSMPUG00000006936	LSM6	88	100.000	Mustela_putorius_furo
ENSAPLG00000012594	LSM6	99	100.000	ENSMLUG00000026355	LSM6	96	100.000	Myotis_lucifugus
ENSAPLG00000012594	LSM6	99	100.000	ENSNGAG00000019116	Lsm6	96	100.000	Nannospalax_galili
ENSAPLG00000012594	LSM6	99	94.805	ENSNBRG00000004887	lsm6	96	94.805	Neolamprologus_brichardi
ENSAPLG00000012594	LSM6	99	100.000	ENSNLEG00000005584	LSM6	96	100.000	Nomascus_leucogenys
ENSAPLG00000012594	LSM6	99	98.701	ENSOPRG00000011199	LSM6	96	98.701	Ochotona_princeps
ENSAPLG00000012594	LSM6	99	98.701	ENSODEG00000002307	-	96	98.701	Octodon_degus
ENSAPLG00000012594	LSM6	99	97.403	ENSODEG00000020420	-	96	97.403	Octodon_degus
ENSAPLG00000012594	LSM6	99	96.104	ENSODEG00000019419	-	96	96.104	Octodon_degus
ENSAPLG00000012594	LSM6	95	87.838	ENSODEG00000018684	-	96	87.838	Octodon_degus
ENSAPLG00000012594	LSM6	99	94.805	ENSONIG00000010005	lsm6	96	94.805	Oreochromis_niloticus
ENSAPLG00000012594	LSM6	99	74.026	ENSOANG00000006895	-	99	74.026	Ornithorhynchus_anatinus
ENSAPLG00000012594	LSM6	99	74.026	ENSOANG00000006894	-	99	74.026	Ornithorhynchus_anatinus
ENSAPLG00000012594	LSM6	99	94.805	ENSORLG00000024158	lsm6	96	94.805	Oryzias_latipes
ENSAPLG00000012594	LSM6	99	94.805	ENSORLG00020017383	lsm6	96	94.805	Oryzias_latipes_hni
ENSAPLG00000012594	LSM6	99	94.805	ENSORLG00015016903	lsm6	96	94.805	Oryzias_latipes_hsok
ENSAPLG00000012594	LSM6	99	94.805	ENSOMEG00000000074	lsm6	96	94.805	Oryzias_melastigma
ENSAPLG00000012594	LSM6	99	100.000	ENSOGAG00000026665	-	96	100.000	Otolemur_garnettii
ENSAPLG00000012594	LSM6	99	100.000	ENSOGAG00000033153	-	96	100.000	Otolemur_garnettii
ENSAPLG00000012594	LSM6	97	94.737	ENSOARG00000011641	-	88	94.737	Ovis_aries
ENSAPLG00000012594	LSM6	85	100.000	ENSOARG00000008509	-	85	100.000	Ovis_aries
ENSAPLG00000012594	LSM6	99	100.000	ENSPPAG00000037929	LSM6	96	100.000	Pan_paniscus
ENSAPLG00000012594	LSM6	99	100.000	ENSPPRG00000012806	LSM6	96	100.000	Panthera_pardus
ENSAPLG00000012594	LSM6	99	100.000	ENSPTIG00000019769	LSM6	96	100.000	Panthera_tigris_altaica
ENSAPLG00000012594	LSM6	99	100.000	ENSPTRG00000016488	LSM6	96	100.000	Pan_troglodytes
ENSAPLG00000012594	LSM6	99	100.000	ENSPANG00000006552	LSM6	96	100.000	Papio_anubis
ENSAPLG00000012594	LSM6	99	96.104	ENSPKIG00000016176	lsm6	96	96.104	Paramormyrops_kingsleyae
ENSAPLG00000012594	LSM6	99	100.000	ENSPSIG00000016942	LSM6	96	100.000	Pelodiscus_sinensis
ENSAPLG00000012594	LSM6	99	94.805	ENSPMGG00000018004	lsm6	96	94.805	Periophthalmus_magnuspinnatus
ENSAPLG00000012594	LSM6	99	100.000	ENSPEMG00000012410	Lsm6	96	100.000	Peromyscus_maniculatus_bairdii
ENSAPLG00000012594	LSM6	99	98.701	ENSPMAG00000006949	lsm6	96	98.701	Petromyzon_marinus
ENSAPLG00000012594	LSM6	99	100.000	ENSPCIG00000023469	LSM6	77	100.000	Phascolarctos_cinereus
ENSAPLG00000012594	LSM6	99	94.805	ENSPFOG00000008881	lsm6	96	94.805	Poecilia_formosa
ENSAPLG00000012594	LSM6	99	94.805	ENSPLAG00000003202	lsm6	96	94.805	Poecilia_latipinna
ENSAPLG00000012594	LSM6	99	94.805	ENSPMEG00000004000	lsm6	96	94.805	Poecilia_mexicana
ENSAPLG00000012594	LSM6	99	94.805	ENSPREG00000023235	lsm6	96	94.805	Poecilia_reticulata
ENSAPLG00000012594	LSM6	99	100.000	ENSPPYG00000015105	LSM6	96	100.000	Pongo_abelii
ENSAPLG00000012594	LSM6	99	100.000	ENSPCOG00000013899	LSM6	96	100.000	Propithecus_coquereli
ENSAPLG00000012594	LSM6	99	94.805	ENSPNYG00000012614	lsm6	96	94.805	Pundamilia_nyererei
ENSAPLG00000012594	LSM6	99	96.104	ENSPNAG00000018779	lsm6	96	96.104	Pygocentrus_nattereri
ENSAPLG00000012594	LSM6	99	100.000	ENSRNOG00000030374	Lsm6	96	100.000	Rattus_norvegicus
ENSAPLG00000012594	LSM6	99	100.000	ENSRNOG00000049370	LOC100360750	96	100.000	Rattus_norvegicus
ENSAPLG00000012594	LSM6	99	100.000	ENSRBIG00000027878	LSM6	96	100.000	Rhinopithecus_bieti
ENSAPLG00000012594	LSM6	99	100.000	ENSRROG00000024868	LSM6	96	100.000	Rhinopithecus_roxellana
ENSAPLG00000012594	LSM6	90	43.243	YDR378C	-	86	47.297	Saccharomyces_cerevisiae
ENSAPLG00000012594	LSM6	97	73.684	ENSSBOG00000028103	-	94	73.684	Saimiri_boliviensis_boliviensis
ENSAPLG00000012594	LSM6	99	100.000	ENSSBOG00000021229	-	96	100.000	Saimiri_boliviensis_boliviensis
ENSAPLG00000012594	LSM6	99	96.104	ENSSFOG00015016480	lsm6	96	96.104	Scleropages_formosus
ENSAPLG00000012594	LSM6	99	94.805	ENSSMAG00000004550	lsm6	96	94.805	Scophthalmus_maximus
ENSAPLG00000012594	LSM6	85	96.970	ENSSLDG00000004136	-	57	96.970	Seriola_lalandi_dorsalis
ENSAPLG00000012594	LSM6	99	94.805	ENSSLDG00000020533	lsm6	80	94.805	Seriola_lalandi_dorsalis
ENSAPLG00000012594	LSM6	62	100.000	ENSSARG00000000689	LSM6	100	100.000	Sorex_araneus
ENSAPLG00000012594	LSM6	99	100.000	ENSSPUG00000008657	LSM6	96	100.000	Sphenodon_punctatus
ENSAPLG00000012594	LSM6	99	94.805	ENSSPAG00000003246	lsm6	96	94.805	Stegastes_partitus
ENSAPLG00000012594	LSM6	99	100.000	ENSSSCG00000035973	LSM6	96	100.000	Sus_scrofa
ENSAPLG00000012594	LSM6	99	100.000	ENSTGUG00000002663	LSM6	96	100.000	Taeniopygia_guttata
ENSAPLG00000012594	LSM6	99	94.805	ENSTRUG00000023398	lsm6	96	94.805	Takifugu_rubripes
ENSAPLG00000012594	LSM6	99	94.805	ENSTNIG00000017725	lsm6	96	94.805	Tetraodon_nigroviridis
ENSAPLG00000012594	LSM6	99	100.000	ENSTTRG00000004609	LSM6	96	100.000	Tursiops_truncatus
ENSAPLG00000012594	LSM6	96	90.667	ENSUAMG00000014213	LSM6	61	90.667	Ursus_americanus
ENSAPLG00000012594	LSM6	96	90.667	ENSUMAG00000015727	LSM6	61	90.667	Ursus_maritimus
ENSAPLG00000012594	LSM6	99	100.000	ENSVPAG00000006922	LSM6	96	100.000	Vicugna_pacos
ENSAPLG00000012594	LSM6	99	100.000	ENSVVUG00000009254	LSM6	66	100.000	Vulpes_vulpes
ENSAPLG00000012594	LSM6	99	100.000	ENSXETG00000023683	lsm6	96	100.000	Xenopus_tropicalis
ENSAPLG00000012594	LSM6	99	94.805	ENSXMAG00000009606	lsm6	96	94.805	Xiphophorus_maculatus