EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAPLG00000012897 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: nucleolin
Gene Type: protein_coding
Species: Anas_platyrhynchos
Status: putative
Strand: Plus strand
Length: 5588 bases
Position: chrKB742477.1:32752-38339
Accession: 101797510
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAPLP00000012724	RRM_1	PF00076.22	1.5e-68	1	4
ENSAPLP00000012724	RRM_1	PF00076.22	1.5e-68	2	4
ENSAPLP00000012724	RRM_1	PF00076.22	1.5e-68	3	4
ENSAPLP00000012724	RRM_1	PF00076.22	1.5e-68	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAPLT00000013467	-	2433	XM_005010341	ENSAPLP00000012724	603 (aa)	XP_005010398	U3IZP7

Gene Model

Click here to download ENSAPLG00000012897's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAPLG00000012897's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAPLG00000012897	-	52	32.479	ENSAPLG00000010429	ELAVL2	87	32.479
ENSAPLG00000012897	-	52	35.366	ENSAPLG00000002634	ELAVL4	86	34.091
ENSAPLG00000012897	-	53	35.075	ENSAPLG00000009088	TIAL1	59	35.075
ENSAPLG00000012897	-	60	31.667	ENSAPLG00000009953	TIA1	77	31.667

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAPLG00000012897	-	63	58.947	ENSAPOG00000023888	ncl	72	49.184	Acanthochromis_polyacanthus
ENSAPLG00000012897	-	66	39.512	ENSAPOG00000014534	-	68	39.130	Acanthochromis_polyacanthus
ENSAPLG00000012897	-	64	56.848	ENSACIG00000013234	ncl	85	54.791	Amphilophus_citrinellus
ENSAPLG00000012897	-	66	39.320	ENSAOCG00000014792	-	61	39.440	Amphiprion_ocellaris
ENSAPLG00000012897	-	66	39.320	ENSAPEG00000013612	-	61	39.440	Amphiprion_percula
ENSAPLG00000012897	-	63	59.416	ENSAPEG00000002769	ncl	54	56.489	Amphiprion_percula
ENSAPLG00000012897	-	64	59.326	ENSATEG00000013343	ncl	55	58.163	Anabas_testudineus
ENSAPLG00000012897	-	66	41.787	ENSATEG00000019862	-	75	43.089	Anabas_testudineus
ENSAPLG00000012897	-	62	60.450	ENSACLG00000026031	ncl	85	60.450	Astatotilapia_calliptera
ENSAPLG00000012897	-	63	57.672	ENSAMXG00000001647	ncl	81	59.477	Astyanax_mexicanus
ENSAPLG00000012897	-	54	53.150	ENSCHIG00000003401	-	52	56.769	Capra_hircus
ENSAPLG00000012897	-	67	58.333	ENSCHIG00000012665	-	54	46.770	Capra_hircus
ENSAPLG00000012897	-	97	65.954	ENSCPBG00000016444	-	83	71.125	Chrysemys_picta_bellii
ENSAPLG00000012897	-	63	58.530	ENSCSEG00000015089	ncl	57	57.743	Cynoglossus_semilaevis
ENSAPLG00000012897	-	63	58.575	ENSCVAG00000012600	ncl	54	57.592	Cyprinodon_variegatus
ENSAPLG00000012897	-	52	61.415	ENSDARG00000002710	ncl	84	60.182	Danio_rerio
ENSAPLG00000012897	-	63	49.614	ENSDNOG00000031611	-	84	44.536	Dasypus_novemcinctus
ENSAPLG00000012897	-	61	51.351	ENSDNOG00000040257	-	57	51.989	Dasypus_novemcinctus
ENSAPLG00000012897	-	55	57.792	ENSDNOG00000040440	-	96	57.823	Dasypus_novemcinctus
ENSAPLG00000012897	-	78	48.276	ENSEBUG00000016173	ncl	63	44.941	Eptatretus_burgeri
ENSAPLG00000012897	-	63	58.839	ENSELUG00000006033	ncl	66	53.878	Esox_lucius
ENSAPLG00000012897	-	69	47.716	ENSELUG00000022826	-	82	48.042	Esox_lucius
ENSAPLG00000012897	-	63	58.115	ENSFHEG00000018000	ncl	60	57.835	Fundulus_heteroclitus
ENSAPLG00000012897	-	64	94.805	ENSGALG00000032930	NCL	65	85.714	Gallus_gallus
ENSAPLG00000012897	-	63	59.416	ENSGAFG00000015375	ncl	58	47.059	Gambusia_affinis
ENSAPLG00000012897	-	62	56.764	ENSGACG00000008970	ncl	75	50.756	Gasterosteus_aculeatus
ENSAPLG00000012897	-	63	59.682	ENSHCOG00000010234	ncl	61	51.948	Hippocampus_comes
ENSAPLG00000012897	-	63	60.323	ENSIPUG00000024556	ncl	86	57.478	Ictalurus_punctatus
ENSAPLG00000012897	-	63	59.151	ENSKMAG00000008111	ncl	53	58.886	Kryptolebias_marmoratus
ENSAPLG00000012897	-	61	41.406	ENSLBEG00000014278	-	81	41.096	Labrus_bergylta
ENSAPLG00000012897	-	62	58.933	ENSLBEG00000019073	ncl	55	58.221	Labrus_bergylta
ENSAPLG00000012897	-	65	40.587	ENSLBEG00000007915	-	62	41.351	Labrus_bergylta
ENSAPLG00000012897	-	64	64.599	ENSLACG00000009328	ncl	63	57.235	Latimeria_chalumnae
ENSAPLG00000012897	-	64	51.151	ENSLACG00000022167	-	81	50.000	Latimeria_chalumnae
ENSAPLG00000012897	-	60	57.995	ENSLOCG00000004828	ncl	59	52.361	Lepisosteus_oculatus
ENSAPLG00000012897	-	65	38.257	ENSMAMG00000003479	-	65	38.919	Mastacembelus_armatus
ENSAPLG00000012897	-	62	96.507	ENSMGAG00000008147	-	87	94.667	Meleagris_gallopavo
ENSAPLG00000012897	-	60	60.645	ENSMMOG00000008553	ncl	87	58.610	Mola_mola
ENSAPLG00000012897	-	63	66.582	ENSMODG00000002470	-	54	66.412	Monodelphis_domestica
ENSAPLG00000012897	-	66	72.093	ENSMPUG00000001663	-	57	47.923	Mustela_putorius_furo
ENSAPLG00000012897	-	62	62.021	ENSNBRG00000000146	-	85	62.021	Neolamprologus_brichardi
ENSAPLG00000012897	-	62	62.021	ENSNBRG00000001232	ncl	81	62.021	Neolamprologus_brichardi
ENSAPLG00000012897	-	65	65.931	ENSMEUG00000012335	-	67	58.351	Notamacropus_eugenii
ENSAPLG00000012897	-	62	36.533	ENSONIG00000010631	-	91	36.857	Oreochromis_niloticus
ENSAPLG00000012897	-	63	68.542	ENSOANG00000008732	-	64	67.237	Ornithorhynchus_anatinus
ENSAPLG00000012897	-	60	56.319	ENSORLG00000007055	ncl	54	55.416	Oryzias_latipes
ENSAPLG00000012897	-	67	33.094	ENSORLG00000004645	-	78	34.890	Oryzias_latipes
ENSAPLG00000012897	-	61	34.646	ENSORLG00020003497	-	70	35.440	Oryzias_latipes_hni
ENSAPLG00000012897	-	63	55.673	ENSORLG00020017943	ncl	54	55.416	Oryzias_latipes_hni
ENSAPLG00000012897	-	58	59.677	ENSORLG00015013815	ncl	87	60.125	Oryzias_latipes_hsok
ENSAPLG00000012897	-	67	34.293	ENSORLG00015006613	-	73	35.714	Oryzias_latipes_hsok
ENSAPLG00000012897	-	65	36.049	ENSOMEG00000015864	-	82	35.401	Oryzias_melastigma
ENSAPLG00000012897	-	63	57.560	ENSOMEG00000020786	ncl	54	55.309	Oryzias_melastigma
ENSAPLG00000012897	-	63	61.478	ENSPKIG00000002604	ncl	66	57.882	Paramormyrops_kingsleyae
ENSAPLG00000012897	-	95	64.452	ENSPSIG00000002361	-	63	69.214	Pelodiscus_sinensis
ENSAPLG00000012897	-	61	61.465	ENSPMGG00000004709	ncl	82	61.465	Periophthalmus_magnuspinnatus
ENSAPLG00000012897	-	65	65.301	ENSPCIG00000003293	-	57	65.301	Phascolarctos_cinereus
ENSAPLG00000012897	-	63	59.162	ENSPFOG00000024205	ncl	51	59.424	Poecilia_formosa
ENSAPLG00000012897	-	63	59.162	ENSPMEG00000006000	ncl	51	58.639	Poecilia_mexicana
ENSAPLG00000012897	-	63	58.421	ENSPNAG00000006192	ncl	51	59.631	Pygocentrus_nattereri
ENSAPLG00000012897	-	63	61.917	ENSSHAG00000002702	-	59	61.856	Sarcophilus_harrisii
ENSAPLG00000012897	-	66	63.258	ENSSHAG00000007489	-	50	62.879	Sarcophilus_harrisii
ENSAPLG00000012897	-	63	63.660	ENSSFOG00015008583	ncl	58	62.334	Scleropages_formosus
ENSAPLG00000012897	-	60	41.033	ENSSFOG00015013153	-	84	41.853	Scleropages_formosus
ENSAPLG00000012897	-	66	40.436	ENSSMAG00000007582	-	63	40.695	Scophthalmus_maximus
ENSAPLG00000012897	-	63	58.421	ENSSMAG00000021241	ncl	82	56.818	Scophthalmus_maximus
ENSAPLG00000012897	-	67	40.995	ENSSDUG00000010922	-	71	39.295	Seriola_dumerili
ENSAPLG00000012897	-	89	60.267	ENSSDUG00000006128	ncl	95	55.450	Seriola_dumerili
ENSAPLG00000012897	-	64	40.602	ENSSLDG00000015784	-	65	39.241	Seriola_lalandi_dorsalis
ENSAPLG00000012897	-	75	65.532	ENSSPUG00000008244	-	61	72.750	Sphenodon_punctatus
ENSAPLG00000012897	-	65	40.299	ENSSPAG00000001859	-	61	40.260	Stegastes_partitus
ENSAPLG00000012897	-	76	70.690	ENSTGUG00000009782	-	71	69.647	Taeniopygia_guttata
ENSAPLG00000012897	-	94	52.027	ENSXETG00000009517	ncl	70	54.343	Xenopus_tropicalis
ENSAPLG00000012897	-	69	42.901	ENSXCOG00000003524	ncl	88	48.691	Xiphophorus_couchianus
ENSAPLG00000012897	-	62	36.104	ENSXCOG00000007369	-	91	36.104	Xiphophorus_couchianus
ENSAPLG00000012897	-	63	59.948	ENSXMAG00000005914	ncl	51	58.901	Xiphophorus_maculatus