EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAPOG00000000622 (Gene tree)
Gene ID: 110949544
Gene Symbol: xrn1
Alias: wu:fk92c07|zgc:63635
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Acanthochromis_polyacanthus
Status: putative
Strand: Plus strand
Length: 19019 bases
Position: chrMVNR01000113.1:203091-222109
Accession: 110949544
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAPOP00000033196	XRN_N	PF03159.18	4.8e-96	1	1
ENSAPOP00000018234	XRN_N	PF03159.18	3.2e-91	1	1
ENSAPOP00000018194	XRN_N	PF03159.18	3.6e-48	1	1
ENSAPOP00000033131	XRN_N	PF03159.18	3.7e-48	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAPOT00000027753	-	4722	XM_022191663	ENSAPOP00000018234	1573 (aa)	XP_022047355	-
ENSAPOT00000027834	-	4803	-	ENSAPOP00000033196	1600 (aa)	-	-
ENSAPOT00000027691	-	1473	-	ENSAPOP00000018194	490 (aa)	-	-
ENSAPOT00000027712	-	1482	-	ENSAPOP00000033131	493 (aa)	-	-

Gene Model

Click here to download ENSAPOG00000000622's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAPOG00000000622's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAPOG00000000622	xrn1	92	38.649	ENSAPOG00000009818	xrn2	70	40.962

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAPOG00000000622	xrn1	100	69.800	ENSG00000114127	XRN1	96	96.117	Homo_sapiens
ENSAPOG00000000622	xrn1	93	76.333	ENSAMEG00000012538	XRN1	93	72.690	Ailuropoda_melanoleuca
ENSAPOG00000000622	xrn1	100	86.924	ENSACIG00000001057	xrn1	99	86.740	Amphilophus_citrinellus
ENSAPOG00000000622	xrn1	100	94.510	ENSAOCG00000014097	xrn1	94	98.025	Amphiprion_ocellaris
ENSAPOG00000000622	xrn1	100	95.137	ENSAPEG00000006620	xrn1	99	94.044	Amphiprion_percula
ENSAPOG00000000622	xrn1	100	82.411	ENSATEG00000009752	xrn1	100	81.942	Anabas_testudineus
ENSAPOG00000000622	xrn1	93	76.874	ENSAPLG00000004905	XRN1	97	69.544	Anas_platyrhynchos
ENSAPOG00000000622	xrn1	99	71.704	ENSACAG00000004985	XRN1	92	71.842	Anolis_carolinensis
ENSAPOG00000000622	xrn1	100	70.285	ENSANAG00000029013	XRN1	99	73.875	Aotus_nancymaae
ENSAPOG00000000622	xrn1	96	85.714	ENSACLG00000004806	xrn1	97	87.332	Astatotilapia_calliptera
ENSAPOG00000000622	xrn1	93	76.522	ENSAMXG00000019370	xrn1	95	98.058	Astyanax_mexicanus
ENSAPOG00000000622	xrn1	98	72.683	ENSBTAG00000011524	XRN1	95	72.868	Bos_taurus
ENSAPOG00000000622	xrn1	94	45.269	WBGene00012730	xrn-1	75	61.930	Caenorhabditis_elegans
ENSAPOG00000000622	xrn1	93	76.333	ENSCJAG00000001872	XRN1	100	61.822	Callithrix_jacchus
ENSAPOG00000000622	xrn1	93	76.972	ENSCAFG00000007783	XRN1	93	73.431	Canis_familiaris
ENSAPOG00000000622	xrn1	93	76.972	ENSCAFG00020009120	XRN1	99	76.220	Canis_lupus_dingo
ENSAPOG00000000622	xrn1	98	72.602	ENSCHIG00000019192	XRN1	93	72.786	Capra_hircus
ENSAPOG00000000622	xrn1	99	72.616	ENSTSYG00000002705	XRN1	95	72.624	Carlito_syrichta
ENSAPOG00000000622	xrn1	93	62.092	ENSCAPG00000004604	-	99	62.791	Cavia_aperea
ENSAPOG00000000622	xrn1	93	76.333	ENSCCAG00000034800	XRN1	99	77.778	Cebus_capucinus
ENSAPOG00000000622	xrn1	93	76.119	ENSCATG00000041794	XRN1	95	72.861	Cercocebus_atys
ENSAPOG00000000622	xrn1	100	70.439	ENSCLAG00000001451	XRN1	99	78.413	Chinchilla_lanigera
ENSAPOG00000000622	xrn1	93	76.333	ENSCSAG00000011265	XRN1	95	72.883	Chlorocebus_sabaeus
ENSAPOG00000000622	xrn1	56	94.805	ENSCHOG00000013961	-	52	94.805	Choloepus_hoffmanni
ENSAPOG00000000622	xrn1	96	55.509	ENSCING00000001334	-	95	71.816	Ciona_intestinalis
ENSAPOG00000000622	xrn1	93	56.223	ENSCSAVG00000008584	-	93	50.305	Ciona_savignyi
ENSAPOG00000000622	xrn1	93	76.333	ENSCANG00000037495	XRN1	99	77.778	Colobus_angolensis_palliatus
ENSAPOG00000000622	xrn1	93	77.754	ENSCGRG00001019411	Xrn1	99	78.730	Cricetulus_griseus_chok1gshd
ENSAPOG00000000622	xrn1	93	77.754	ENSCGRG00000012464	Xrn1	99	78.730	Cricetulus_griseus_crigri
ENSAPOG00000000622	xrn1	96	84.342	ENSCSEG00000021285	xrn1	94	99.038	Cynoglossus_semilaevis
ENSAPOG00000000622	xrn1	94	81.953	ENSCVAG00000013089	xrn1	99	88.267	Cyprinodon_variegatus
ENSAPOG00000000622	xrn1	99	80.519	ENSDARG00000091652	xrn1	98	83.755	Danio_rerio
ENSAPOG00000000622	xrn1	98	72.779	ENSDORG00000013833	Xrn1	94	73.024	Dipodomys_ordii
ENSAPOG00000000622	xrn1	94	51.277	FBgn0020261	pcm	71	41.548	Drosophila_melanogaster
ENSAPOG00000000622	xrn1	85	68.468	ENSETEG00000003978	XRN1	88	66.942	Echinops_telfairi
ENSAPOG00000000622	xrn1	93	76.874	ENSEASG00005002687	XRN1	99	78.413	Equus_asinus_asinus
ENSAPOG00000000622	xrn1	93	76.759	ENSECAG00000008301	XRN1	100	61.476	Equus_caballus
ENSAPOG00000000622	xrn1	93	76.660	ENSEEUG00000011323	XRN1	89	79.613	Erinaceus_europaeus
ENSAPOG00000000622	xrn1	100	79.592	ENSELUG00000000169	xrn1	93	82.114	Esox_lucius
ENSAPOG00000000622	xrn1	98	68.271	ENSFCAG00000027589	XRN1	99	80.220	Felis_catus
ENSAPOG00000000622	xrn1	99	71.965	ENSFALG00000007021	XRN1	92	72.045	Ficedula_albicollis
ENSAPOG00000000622	xrn1	100	69.492	ENSFDAG00000020494	XRN1	99	78.254	Fukomys_damarensis
ENSAPOG00000000622	xrn1	94	77.825	ENSFHEG00000017356	-	98	80.349	Fundulus_heteroclitus
ENSAPOG00000000622	xrn1	94	76.645	ENSGMOG00000006396	xrn1	88	75.885	Gadus_morhua
ENSAPOG00000000622	xrn1	99	73.123	ENSGALG00000002706	XRN1	91	73.043	Gallus_gallus
ENSAPOG00000000622	xrn1	99	88.843	ENSGACG00000014328	xrn1	94	88.925	Gasterosteus_aculeatus
ENSAPOG00000000622	xrn1	93	76.546	ENSGAGG00000017535	XRN1	95	72.536	Gopherus_agassizii
ENSAPOG00000000622	xrn1	93	76.119	ENSGGOG00000008047	XRN1	100	61.722	Gorilla_gorilla
ENSAPOG00000000622	xrn1	100	83.182	ENSHBUG00000005908	xrn1	98	84.823	Haplochromis_burtoni
ENSAPOG00000000622	xrn1	100	70.208	ENSHGLG00000014476	XRN1	99	78.095	Heterocephalus_glaber_female
ENSAPOG00000000622	xrn1	100	70.208	ENSHGLG00100015130	XRN1	99	78.095	Heterocephalus_glaber_male
ENSAPOG00000000622	xrn1	94	84.144	ENSHCOG00000014062	xrn1	99	77.122	Hippocampus_comes
ENSAPOG00000000622	xrn1	98	80.703	ENSIPUG00000015229	xrn1	97	79.183	Ictalurus_punctatus
ENSAPOG00000000622	xrn1	100	70.285	ENSSTOG00000013552	XRN1	99	77.937	Ictidomys_tridecemlineatus
ENSAPOG00000000622	xrn1	93	76.923	ENSJJAG00000010863	Xrn1	99	76.661	Jaculus_jaculus
ENSAPOG00000000622	xrn1	94	84.778	ENSKMAG00000021356	xrn1	95	86.441	Kryptolebias_marmoratus
ENSAPOG00000000622	xrn1	98	88.066	ENSLBEG00000018656	xrn1	97	100.000	Labrus_bergylta
ENSAPOG00000000622	xrn1	99	72.276	ENSLACG00000009020	XRN1	94	72.276	Latimeria_chalumnae
ENSAPOG00000000622	xrn1	99	76.880	ENSLOCG00000007944	xrn1	99	74.537	Lepisosteus_oculatus
ENSAPOG00000000622	xrn1	93	76.496	ENSLAFG00000015426	XRN1	99	73.571	Loxodonta_africana
ENSAPOG00000000622	xrn1	93	76.333	ENSMFAG00000032599	XRN1	95	72.786	Macaca_fascicularis
ENSAPOG00000000622	xrn1	93	76.119	ENSMMUG00000014038	XRN1	95	72.705	Macaca_mulatta
ENSAPOG00000000622	xrn1	93	76.546	ENSMNEG00000034217	XRN1	95	72.801	Macaca_nemestrina
ENSAPOG00000000622	xrn1	69	72.365	ENSMLEG00000041349	-	99	79.295	Mandrillus_leucophaeus
ENSAPOG00000000622	xrn1	100	83.725	ENSMAMG00000013219	xrn1	92	90.426	Mastacembelus_armatus
ENSAPOG00000000622	xrn1	96	85.093	ENSMZEG00005015099	xrn1	97	87.332	Maylandia_zebra
ENSAPOG00000000622	xrn1	97	71.417	ENSMGAG00000006333	XRN1	93	71.334	Meleagris_gallopavo
ENSAPOG00000000622	xrn1	100	70.448	ENSMICG00000048948	XRN1	96	96.117	Microcebus_murinus
ENSAPOG00000000622	xrn1	93	77.186	ENSMOCG00000008665	Xrn1	99	78.413	Microtus_ochrogaster
ENSAPOG00000000622	xrn1	94	82.947	ENSMMOG00000020896	-	96	81.365	Mola_mola
ENSAPOG00000000622	xrn1	97	73.997	ENSMODG00000021236	XRN1	94	72.579	Monodelphis_domestica
ENSAPOG00000000622	xrn1	100	80.254	ENSMALG00000004098	xrn1	100	80.678	Monopterus_albus
ENSAPOG00000000622	xrn1	94	76.891	MGP_CAROLIEiJ_G0032535	Xrn1	100	90.000	Mus_caroli
ENSAPOG00000000622	xrn1	94	76.891	ENSMUSG00000032410	Xrn1	100	90.000	Mus_musculus
ENSAPOG00000000622	xrn1	94	76.695	MGP_PahariEiJ_G0015404	Xrn1	100	90.000	Mus_pahari
ENSAPOG00000000622	xrn1	94	76.891	MGP_SPRETEiJ_G0033678	Xrn1	100	90.000	Mus_spretus
ENSAPOG00000000622	xrn1	100	71.317	ENSMPUG00000012040	XRN1	95	73.431	Mustela_putorius_furo
ENSAPOG00000000622	xrn1	100	69.985	ENSMLUG00000016885	XRN1	93	72.638	Myotis_lucifugus
ENSAPOG00000000622	xrn1	93	72.707	ENSNGAG00000023964	Xrn1	99	74.322	Nannospalax_galili
ENSAPOG00000000622	xrn1	93	76.546	ENSNLEG00000004726	XRN1	100	61.373	Nomascus_leucogenys
ENSAPOG00000000622	xrn1	68	96.907	ENSMEUG00000014473	-	66	97.087	Notamacropus_eugenii
ENSAPOG00000000622	xrn1	85	68.224	ENSOPRG00000007337	-	78	66.827	Ochotona_princeps
ENSAPOG00000000622	xrn1	99	90.106	ENSONIG00000016673	xrn1	94	90.270	Oreochromis_niloticus
ENSAPOG00000000622	xrn1	89	73.230	ENSOANG00000006735	XRN1	94	70.428	Ornithorhynchus_anatinus
ENSAPOG00000000622	xrn1	100	70.634	ENSOCUG00000001861	XRN1	93	73.491	Oryctolagus_cuniculus
ENSAPOG00000000622	xrn1	100	84.009	ENSORLG00000013005	xrn1	93	86.792	Oryzias_latipes
ENSAPOG00000000622	xrn1	98	87.039	ENSORLG00020005559	xrn1	94	86.546	Oryzias_latipes_hni
ENSAPOG00000000622	xrn1	93	85.897	ENSORLG00015022523	xrn1	99	79.755	Oryzias_latipes_hsok
ENSAPOG00000000622	xrn1	94	86.412	ENSOMEG00000015397	xrn1	100	80.653	Oryzias_melastigma
ENSAPOG00000000622	xrn1	99	70.603	ENSOGAG00000000170	XRN1	95	70.512	Otolemur_garnettii
ENSAPOG00000000622	xrn1	98	72.786	ENSOARG00000006343	XRN1	95	72.786	Ovis_aries
ENSAPOG00000000622	xrn1	93	76.119	ENSPPAG00000010180	XRN1	100	61.525	Pan_paniscus
ENSAPOG00000000622	xrn1	98	73.290	ENSPPRG00000007125	XRN1	95	73.393	Panthera_pardus
ENSAPOG00000000622	xrn1	98	73.290	ENSPTIG00000021081	XRN1	95	73.393	Panthera_tigris_altaica
ENSAPOG00000000622	xrn1	93	76.119	ENSPTRG00000015482	XRN1	100	61.467	Pan_troglodytes
ENSAPOG00000000622	xrn1	99	72.705	ENSPANG00000010638	XRN1	95	72.705	Papio_anubis
ENSAPOG00000000622	xrn1	100	72.039	ENSPSIG00000018050	XRN1	96	72.303	Pelodiscus_sinensis
ENSAPOG00000000622	xrn1	94	82.803	ENSPMGG00000002648	xrn1	99	87.261	Periophthalmus_magnuspinnatus
ENSAPOG00000000622	xrn1	93	77.399	ENSPEMG00000020610	Xrn1	99	78.730	Peromyscus_maniculatus_bairdii
ENSAPOG00000000622	xrn1	93	52.741	ENSPMAG00000002975	xrn1	90	76.724	Petromyzon_marinus
ENSAPOG00000000622	xrn1	97	74.247	ENSPCIG00000028735	XRN1	99	78.378	Phascolarctos_cinereus
ENSAPOG00000000622	xrn1	94	85.356	ENSPFOG00000013932	xrn1	94	87.682	Poecilia_formosa
ENSAPOG00000000622	xrn1	94	86.892	ENSPLAG00000021653	xrn1	98	81.706	Poecilia_latipinna
ENSAPOG00000000622	xrn1	94	85.294	ENSPMEG00000003076	xrn1	89	88.462	Poecilia_mexicana
ENSAPOG00000000622	xrn1	100	79.529	ENSPREG00000021147	xrn1	100	79.456	Poecilia_reticulata
ENSAPOG00000000622	xrn1	93	76.546	ENSPPYG00000014172	XRN1	100	61.214	Pongo_abelii
ENSAPOG00000000622	xrn1	93	75.641	ENSPCAG00000005638	XRN1	92	77.473	Procavia_capensis
ENSAPOG00000000622	xrn1	100	70.791	ENSPCOG00000013089	XRN1	99	77.778	Propithecus_coquereli
ENSAPOG00000000622	xrn1	93	68.803	ENSPVAG00000016265	XRN1	86	83.478	Pteropus_vampyrus
ENSAPOG00000000622	xrn1	100	83.193	ENSPNYG00000010570	xrn1	99	83.313	Pundamilia_nyererei
ENSAPOG00000000622	xrn1	99	77.004	ENSPNAG00000023531	xrn1	95	77.571	Pygocentrus_nattereri
ENSAPOG00000000622	xrn1	93	77.542	ENSRNOG00000042951	Xrn1	93	72.861	Rattus_norvegicus
ENSAPOG00000000622	xrn1	93	76.333	ENSRBIG00000041227	XRN1	95	72.705	Rhinopithecus_bieti
ENSAPOG00000000622	xrn1	69	72.365	ENSRROG00000033764	-	100	96.117	Rhinopithecus_roxellana
ENSAPOG00000000622	xrn1	87	47.170	YGL173C	XRN1	73	53.261	Saccharomyces_cerevisiae
ENSAPOG00000000622	xrn1	93	76.333	ENSSBOG00000029561	XRN1	98	73.127	Saimiri_boliviensis_boliviensis
ENSAPOG00000000622	xrn1	94	76.695	ENSSHAG00000016207	XRN1	95	72.273	Sarcophilus_harrisii
ENSAPOG00000000622	xrn1	97	79.414	ENSSFOG00015024211	xrn1	96	79.414	Scleropages_formosus
ENSAPOG00000000622	xrn1	100	86.745	ENSSMAG00000016534	xrn1	94	89.233	Scophthalmus_maximus
ENSAPOG00000000622	xrn1	94	89.429	ENSSDUG00000010306	xrn1	97	89.655	Seriola_dumerili
ENSAPOG00000000622	xrn1	100	85.213	ENSSLDG00000021543	xrn1	100	84.781	Seriola_lalandi_dorsalis
ENSAPOG00000000622	xrn1	94	76.008	ENSSARG00000007741	-	75	67.975	Sorex_araneus
ENSAPOG00000000622	xrn1	99	72.655	ENSSPUG00000010779	-	95	75.745	Sphenodon_punctatus
ENSAPOG00000000622	xrn1	97	91.975	ENSSPAG00000009856	-	95	93.840	Stegastes_partitus
ENSAPOG00000000622	xrn1	99	73.083	ENSTGUG00000008498	XRN1	95	72.573	Taeniopygia_guttata
ENSAPOG00000000622	xrn1	98	82.104	ENSTRUG00000004895	xrn1	96	87.554	Takifugu_rubripes
ENSAPOG00000000622	xrn1	99	83.143	ENSTNIG00000017615	xrn1	94	83.279	Tetraodon_nigroviridis
ENSAPOG00000000622	xrn1	78	82.787	ENSTBEG00000003256	XRN1	75	82.005	Tupaia_belangeri
ENSAPOG00000000622	xrn1	93	74.573	ENSTTRG00000012914	XRN1	100	57.968	Tursiops_truncatus
ENSAPOG00000000622	xrn1	93	72.281	ENSUAMG00000001608	XRN1	99	75.079	Ursus_americanus
ENSAPOG00000000622	xrn1	93	76.972	ENSUMAG00000013625	XRN1	95	73.208	Ursus_maritimus
ENSAPOG00000000622	xrn1	93	76.496	ENSVPAG00000004690	XRN1	100	59.583	Vicugna_pacos
ENSAPOG00000000622	xrn1	95	75.992	ENSVVUG00000024461	XRN1	99	78.571	Vulpes_vulpes
ENSAPOG00000000622	xrn1	93	76.017	ENSXETG00000000619	xrn1	99	84.514	Xenopus_tropicalis
ENSAPOG00000000622	xrn1	100	79.988	ENSXCOG00000007917	xrn1	100	80.346	Xiphophorus_couchianus
ENSAPOG00000000622	xrn1	93	87.406	ENSXMAG00000018320	xrn1	98	87.573	Xiphophorus_maculatus