EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSAPOG00000001170 (Gene tree)
Gene ID: 110950057
Gene Symbol: srrm1
Alias: wu:fb34f04|wu:fb38b06|zgc:63802
Full Name: serine and arginine repetitive matrix 1
Gene Type: protein_coding
Species: Acanthochromis_polyacanthus
Status: putative
Strand: Minus strand
Length: 10625 bases
Position: chrMVNR01000133.1:526287-536911
Accession: 110950057
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAPOP00000000051	PWI	PF01480.17	8.9e-31	1	1
ENSAPOP00000000050	PWI	PF01480.17	9.3e-31	1	1
ENSAPOP00000020935	PWI	PF01480.17	2.9e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAPOT00000017571	-	3618	XM_022192446	ENSAPOP00000000050	864 (aa)	XP_022048138	UPI000B8F5ABA
ENSAPOT00000017572	-	3531	-	ENSAPOP00000000051	835 (aa)	-	-
ENSAPOT00000017573	-	1211	-	ENSAPOP00000020935	79 (aa)	-	-

Gene Model

Click here to download ENSAPOG00000001170's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAPOG00000001170's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAPOG00000001170	srrm1	99	100.000	ENSAOCG00000021757	srrm1	100	97.222	Amphiprion_ocellaris
ENSAPOG00000001170	srrm1	99	98.718	ENSAPEG00000018964	srrm1	100	96.528	Amphiprion_percula
ENSAPOG00000001170	srrm1	99	98.718	ENSATEG00000007659	srrm1	60	90.643	Anabas_testudineus
ENSAPOG00000001170	srrm1	100	96.203	ENSDARG00000001244	srrm1	100	96.203	Danio_rerio
ENSAPOG00000001170	srrm1	100	97.468	ENSELUG00000003385	srrm1	100	97.468	Esox_lucius
ENSAPOG00000001170	srrm1	99	100.000	ENSGACG00000007266	srrm1	65	92.899	Gasterosteus_aculeatus
ENSAPOG00000001170	srrm1	58	82.000	ENSHBUG00000020364	srrm1	63	79.000	Haplochromis_burtoni
ENSAPOG00000001170	srrm1	99	96.154	ENSHCOG00000012829	srrm1	57	77.579	Hippocampus_comes
ENSAPOG00000001170	srrm1	99	100.000	ENSLBEG00000013936	srrm1	100	87.861	Labrus_bergylta
ENSAPOG00000001170	srrm1	99	98.718	ENSMAMG00000010305	srrm1	60	91.440	Mastacembelus_armatus
ENSAPOG00000001170	srrm1	99	100.000	ENSONIG00000008206	srrm1	54	79.400	Oreochromis_niloticus
ENSAPOG00000001170	srrm1	99	100.000	ENSORLG00015014743	srrm1	59	81.489	Oryzias_latipes_hsok
ENSAPOG00000001170	srrm1	99	100.000	ENSOMEG00000014110	srrm1	74	100.000	Oryzias_melastigma
ENSAPOG00000001170	srrm1	99	98.718	ENSPKIG00000008252	srrm1	62	75.175	Paramormyrops_kingsleyae
ENSAPOG00000001170	srrm1	100	100.000	ENSPLAG00000006807	srrm1	100	100.000	Poecilia_latipinna
ENSAPOG00000001170	srrm1	99	100.000	ENSPLAG00000002058	srrm1	77	100.000	Poecilia_latipinna
ENSAPOG00000001170	srrm1	99	100.000	ENSPREG00000002652	srrm1	91	76.892	Poecilia_reticulata
ENSAPOG00000001170	srrm1	99	98.718	ENSSDUG00000012967	srrm1	59	93.762	Seriola_dumerili
ENSAPOG00000001170	srrm1	99	98.718	ENSSLDG00000012771	srrm1	59	93.957	Seriola_lalandi_dorsalis
ENSAPOG00000001170	srrm1	99	100.000	ENSSPAG00000009507	srrm1	100	95.023	Stegastes_partitus
ENSAPOG00000001170	srrm1	99	96.154	ENSTRUG00000002519	srrm1	60	80.971	Takifugu_rubripes
ENSAPOG00000001170	srrm1	99	96.154	ENSTNIG00000016909	srrm1	62	82.330	Tetraodon_nigroviridis
ENSAPOG00000001170	srrm1	99	100.000	ENSXCOG00000011828	srrm1	98	82.716	Xiphophorus_couchianus
ENSAPOG00000001170	srrm1	99	100.000	ENSXMAG00000018863	srrm1	59	83.752	Xiphophorus_maculatus