EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAPOG00000004458 (Gene tree)
Gene ID: 110953530
Gene Symbol: cirbpa
Alias: cirbp|wu:fb12c11|wu:fi20g12|zgc:136559
Full Name: cold inducible RNA binding protein
Gene Type: protein_coding
Species: Acanthochromis_polyacanthus
Status: putative
Strand: Minus strand
Length: 4466 bases
Position: chrMVNR01000299.1:288330-292795
Accession: 110953530
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAPOP00000022975	RRM_1	PF00076.22	1.5e-25	1	1
ENSAPOP00000003003	RRM_1	PF00076.22	1.5e-25	1	1
ENSAPOP00000003008	RRM_1	PF00076.22	1.9e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAPOT00000012473	-	779	XM_022197592	ENSAPOP00000022975	186 (aa)	XP_022053284	UPI000B8EF9A7
ENSAPOT00000012484	-	707	XM_022197591	ENSAPOP00000003003	189 (aa)	XP_022053283	UPI000B8F2C1B
ENSAPOT00000012465	-	777	-	ENSAPOP00000003008	214 (aa)	-	-

Gene Model

Click here to download ENSAPOG00000004458's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAPOG00000004458's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAPOG00000004458	cirbpa	62	38.636	ENSAPOG00000006184	hnrnpd	52	39.241
ENSAPOG00000004458	cirbpa	92	34.659	ENSAPOG00000003641	hnrnpa3	58	52.113
ENSAPOG00000004458	cirbpa	61	37.500	ENSAPOG00000001912	-	77	37.500

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAPOG00000004458	cirbpa	100	70.918	ENSACIG00000016116	cirbpa	70	87.218	Amphilophus_citrinellus
ENSAPOG00000004458	cirbpa	72	81.955	ENSAOCG00000016212	cirbpa	70	83.206	Amphiprion_ocellaris
ENSAPOG00000004458	cirbpa	72	81.955	ENSAPEG00000011989	cirbpa	71	83.206	Amphiprion_percula
ENSAPOG00000004458	cirbpa	100	72.222	ENSATEG00000014985	cirbpa	71	88.372	Anabas_testudineus
ENSAPOG00000004458	cirbpa	100	72.396	ENSACLG00000002094	-	73	92.481	Astatotilapia_calliptera
ENSAPOG00000004458	cirbpa	74	68.310	ENSCSEG00000014344	cirbpa	62	64.662	Cynoglossus_semilaevis
ENSAPOG00000004458	cirbpa	100	72.308	ENSCVAG00000004853	cirbpa	73	84.211	Cyprinodon_variegatus
ENSAPOG00000004458	cirbpa	59	50.000	ENSELUG00000004675	-	84	57.764	Esox_lucius
ENSAPOG00000004458	cirbpa	69	80.620	ENSFHEG00000002580	cirbpa	69	81.203	Fundulus_heteroclitus
ENSAPOG00000004458	cirbpa	80	58.278	ENSGMOG00000007179	cirbpb	76	56.818	Gadus_morhua
ENSAPOG00000004458	cirbpa	78	55.172	ENSGMOG00000020447	-	52	77.174	Gadus_morhua
ENSAPOG00000004458	cirbpa	72	83.582	ENSGAFG00000008654	cirbpa	72	84.211	Gambusia_affinis
ENSAPOG00000004458	cirbpa	100	72.396	ENSHBUG00000022060	cirbpa	73	92.481	Haplochromis_burtoni
ENSAPOG00000004458	cirbpa	71	77.444	ENSKMAG00000005905	cirbpa	72	74.436	Kryptolebias_marmoratus
ENSAPOG00000004458	cirbpa	59	76.364	ENSLBEG00000027731	-	73	81.111	Labrus_bergylta
ENSAPOG00000004458	cirbpa	100	58.201	ENSLBEG00000000292	cirbpa	58	80.645	Labrus_bergylta
ENSAPOG00000004458	cirbpa	100	73.096	ENSMAMG00000010168	cirbpa	73	87.970	Mastacembelus_armatus
ENSAPOG00000004458	cirbpa	100	72.396	ENSMZEG00005025577	-	73	92.481	Maylandia_zebra
ENSAPOG00000004458	cirbpa	100	72.396	ENSNBRG00000019658	cirbpa	73	92.481	Neolamprologus_brichardi
ENSAPOG00000004458	cirbpa	100	70.833	ENSONIG00000010169	cirbpa	70	87.218	Oreochromis_niloticus
ENSAPOG00000004458	cirbpa	69	82.031	ENSORLG00000015433	cirbpa	55	97.753	Oryzias_latipes
ENSAPOG00000004458	cirbpa	69	82.031	ENSORLG00020016909	cirbpa	55	97.753	Oryzias_latipes_hni
ENSAPOG00000004458	cirbpa	69	82.031	ENSORLG00015016636	cirbpa	70	82.707	Oryzias_latipes_hsok
ENSAPOG00000004458	cirbpa	100	67.172	ENSOMEG00000021469	cirbpa	52	82.707	Oryzias_melastigma
ENSAPOG00000004458	cirbpa	53	90.000	ENSPMGG00000017342	cirbpa	65	82.946	Periophthalmus_magnuspinnatus
ENSAPOG00000004458	cirbpa	72	84.328	ENSPFOG00000015653	cirbpa	73	84.962	Poecilia_formosa
ENSAPOG00000004458	cirbpa	72	84.328	ENSPLAG00000011125	cirbpa	73	84.962	Poecilia_latipinna
ENSAPOG00000004458	cirbpa	72	84.328	ENSPMEG00000013878	cirbpa	73	84.962	Poecilia_mexicana
ENSAPOG00000004458	cirbpa	100	60.444	ENSPREG00000018042	cirbpa	72	84.962	Poecilia_reticulata
ENSAPOG00000004458	cirbpa	100	72.308	ENSPNYG00000007198	-	72	92.481	Pundamilia_nyererei
ENSAPOG00000004458	cirbpa	79	68.243	ENSPNAG00000019997	cirbpb	68	66.423	Pygocentrus_nattereri
ENSAPOG00000004458	cirbpa	59	94.495	ENSSLDG00000011320	cirbpa	53	94.495	Seriola_lalandi_dorsalis
ENSAPOG00000004458	cirbpa	99	65.946	ENSSPAG00000023037	cirbpa	77	81.061	Stegastes_partitus
ENSAPOG00000004458	cirbpa	77	68.750	ENSTRUG00000010187	cirbpa	80	69.630	Takifugu_rubripes
ENSAPOG00000004458	cirbpa	72	83.582	ENSXCOG00000008262	cirbpa	92	95.890	Xiphophorus_couchianus
ENSAPOG00000004458	cirbpa	72	83.582	ENSXMAG00000019336	cirbpa	73	84.211	Xiphophorus_maculatus