EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAPOG00000005304 (Gene tree)
Gene ID: -
Gene Symbol: hfm1
Alias: si:ch211-83f14.5
Full Name: probable ATP-dependent DNA helicase HFM1
Gene Type: protein_coding
Species: Acanthochromis_polyacanthus
Status: putative
Strand: Plus strand
Length: 14823 bases
Position: chrMVNR01001402.1:117039-131861
Accession: 110965321
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAPOP00000003663	ResIII	PF04851.15	4.5e-10	1	1
ENSAPOP00000023373	ResIII	PF04851.15	3.5e-07	1	1
ENSAPOP00000003663	DEAD	PF00270.29	1.3e-25	1	1
ENSAPOP00000023373	DEAD	PF00270.29	1.9e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAPOT00000011371	-	2649	-	ENSAPOP00000003663	882 (aa)	-	-
ENSAPOT00000011423	-	2562	XM_022214319	ENSAPOP00000023373	854 (aa)	XP_022070011	-

Gene Model

Click here to download ENSAPOG00000005304's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAPOG00000005304's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAPOG00000005304	hfm1	84	31.672	ENSAPOG00000010223	snrnp200	65	31.672

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAPOG00000005304	hfm1	100	65.192	ENSG00000162669	HFM1	64	65.192	Homo_sapiens
ENSAPOG00000005304	hfm1	93	67.110	ENSAMEG00000000432	HFM1	57	67.110	Ailuropoda_melanoleuca
ENSAPOG00000005304	hfm1	96	89.683	ENSACIG00000021553	hfm1	81	89.683	Amphilophus_citrinellus
ENSAPOG00000005304	hfm1	100	95.006	ENSAOCG00000022839	hfm1	100	95.006	Amphiprion_ocellaris
ENSAPOG00000005304	hfm1	100	95.455	ENSAPEG00000014316	hfm1	100	95.455	Amphiprion_percula
ENSAPOG00000005304	hfm1	99	88.168	ENSATEG00000019181	hfm1	72	90.634	Anabas_testudineus
ENSAPOG00000005304	hfm1	94	66.112	ENSAPLG00000013639	HFM1	59	66.112	Anas_platyrhynchos
ENSAPOG00000005304	hfm1	100	63.753	ENSANAG00000029513	HFM1	65	63.753	Aotus_nancymaae
ENSAPOG00000005304	hfm1	99	82.360	ENSACLG00000009033	hfm1	100	82.360	Astatotilapia_calliptera
ENSAPOG00000005304	hfm1	99	75.725	ENSAMXG00000006108	hfm1	61	75.725	Astyanax_mexicanus
ENSAPOG00000005304	hfm1	94	66.627	ENSBTAG00000020856	HFM1	58	66.627	Bos_taurus
ENSAPOG00000005304	hfm1	100	64.411	ENSCJAG00000001843	HFM1	64	64.411	Callithrix_jacchus
ENSAPOG00000005304	hfm1	95	65.362	ENSCAFG00000020187	HFM1	58	65.362	Canis_familiaris
ENSAPOG00000005304	hfm1	100	66.189	ENSTSYG00000014250	HFM1	63	66.189	Carlito_syrichta
ENSAPOG00000005304	hfm1	94	65.550	ENSCPOG00000007421	HFM1	60	65.550	Cavia_porcellus
ENSAPOG00000005304	hfm1	96	64.177	ENSCCAG00000033206	HFM1	60	64.177	Cebus_capucinus
ENSAPOG00000005304	hfm1	100	64.726	ENSCATG00000030987	HFM1	64	64.726	Cercocebus_atys
ENSAPOG00000005304	hfm1	95	66.304	ENSCLAG00000005173	HFM1	56	66.304	Chinchilla_lanigera
ENSAPOG00000005304	hfm1	79	53.482	ENSCSAVG00000005094	-	100	53.482	Ciona_savignyi
ENSAPOG00000005304	hfm1	90	63.354	ENSCGRG00001016995	Hfm1	57	63.354	Cricetulus_griseus_chok1gshd
ENSAPOG00000005304	hfm1	94	64.833	ENSCGRG00000017181	Hfm1	58	64.833	Cricetulus_griseus_crigri
ENSAPOG00000005304	hfm1	95	85.033	ENSCSEG00000017659	hfm1	77	85.033	Cynoglossus_semilaevis
ENSAPOG00000005304	hfm1	81	84.529	ENSCVAG00000005075	hfm1	86	84.529	Cyprinodon_variegatus
ENSAPOG00000005304	hfm1	100	74.083	ENSDARG00000104288	hfm1	81	74.083	Danio_rerio
ENSAPOG00000005304	hfm1	100	64.713	ENSDNOG00000004776	HFM1	60	64.713	Dasypus_novemcinctus
ENSAPOG00000005304	hfm1	94	63.189	ENSDORG00000014661	Hfm1	58	63.189	Dipodomys_ordii
ENSAPOG00000005304	hfm1	50	61.731	ENSEBUG00000006133	-	88	65.190	Eptatretus_burgeri
ENSAPOG00000005304	hfm1	90	66.501	ENSEASG00005015424	HFM1	80	66.501	Equus_asinus_asinus
ENSAPOG00000005304	hfm1	95	65.640	ENSECAG00000024039	HFM1	57	65.640	Equus_caballus
ENSAPOG00000005304	hfm1	100	79.814	ENSELUG00000018944	hfm1	98	79.814	Esox_lucius
ENSAPOG00000005304	hfm1	95	65.758	ENSFCAG00000029116	HFM1	58	65.758	Felis_catus
ENSAPOG00000005304	hfm1	94	66.029	ENSFALG00000001781	HFM1	58	66.029	Ficedula_albicollis
ENSAPOG00000005304	hfm1	94	65.789	ENSFDAG00000020816	HFM1	56	65.789	Fukomys_damarensis
ENSAPOG00000005304	hfm1	93	74.605	ENSGMOG00000017436	hfm1	85	74.605	Gadus_morhua
ENSAPOG00000005304	hfm1	96	86.490	ENSGAFG00000018093	hfm1	100	82.755	Gambusia_affinis
ENSAPOG00000005304	hfm1	93	80.170	ENSGACG00000015686	hfm1	85	80.170	Gasterosteus_aculeatus
ENSAPOG00000005304	hfm1	100	65.192	ENSGGOG00000038524	HFM1	64	65.192	Gorilla_gorilla
ENSAPOG00000005304	hfm1	96	86.476	ENSHBUG00000007309	hfm1	83	86.476	Haplochromis_burtoni
ENSAPOG00000005304	hfm1	99	79.221	ENSHCOG00000019632	hfm1	100	79.221	Hippocampus_comes
ENSAPOG00000005304	hfm1	99	74.397	ENSIPUG00000017020	hfm1	98	74.397	Ictalurus_punctatus
ENSAPOG00000005304	hfm1	96	63.562	ENSJJAG00000017198	Hfm1	61	63.562	Jaculus_jaculus
ENSAPOG00000005304	hfm1	92	82.339	ENSKMAG00000002282	hfm1	84	82.339	Kryptolebias_marmoratus
ENSAPOG00000005304	hfm1	100	84.131	ENSLBEG00000006759	hfm1	99	84.131	Labrus_bergylta
ENSAPOG00000005304	hfm1	93	69.019	ENSLACG00000010698	HFM1	79	69.019	Latimeria_chalumnae
ENSAPOG00000005304	hfm1	94	71.770	ENSLOCG00000004931	hfm1	77	71.770	Lepisosteus_oculatus
ENSAPOG00000005304	hfm1	74	69.894	ENSLAFG00000015903	-	89	69.894	Loxodonta_africana
ENSAPOG00000005304	hfm1	100	62.310	ENSMFAG00000003649	HFM1	64	62.310	Macaca_fascicularis
ENSAPOG00000005304	hfm1	100	64.726	ENSMMUG00000006819	HFM1	64	64.726	Macaca_mulatta
ENSAPOG00000005304	hfm1	99	84.112	ENSMAMG00000004623	hfm1	100	84.112	Mastacembelus_armatus
ENSAPOG00000005304	hfm1	99	82.360	ENSMZEG00005004679	hfm1	100	82.360	Maylandia_zebra
ENSAPOG00000005304	hfm1	86	64.453	ENSMGAG00000008437	HFM1	95	64.453	Meleagris_gallopavo
ENSAPOG00000005304	hfm1	100	64.551	ENSMAUG00000018858	Hfm1	62	64.551	Mesocricetus_auratus
ENSAPOG00000005304	hfm1	100	64.186	ENSMICG00000037935	HFM1	64	64.186	Microcebus_murinus
ENSAPOG00000005304	hfm1	94	64.910	ENSMOCG00000014812	Hfm1	58	64.910	Microtus_ochrogaster
ENSAPOG00000005304	hfm1	100	87.123	ENSMMOG00000006148	hfm1	99	87.123	Mola_mola
ENSAPOG00000005304	hfm1	100	87.413	ENSMALG00000002401	hfm1	100	87.413	Monopterus_albus
ENSAPOG00000005304	hfm1	86	68.800	MGP_CAROLIEiJ_G0027496	Hfm1	53	68.800	Mus_caroli
ENSAPOG00000005304	hfm1	94	64.671	ENSMUSG00000043410	Hfm1	58	64.671	Mus_musculus
ENSAPOG00000005304	hfm1	94	64.671	MGP_PahariEiJ_G0017268	Hfm1	58	64.671	Mus_pahari
ENSAPOG00000005304	hfm1	94	65.150	MGP_SPRETEiJ_G0028495	Hfm1	58	65.150	Mus_spretus
ENSAPOG00000005304	hfm1	95	65.640	ENSMPUG00000004594	HFM1	57	65.640	Mustela_putorius_furo
ENSAPOG00000005304	hfm1	94	65.789	ENSMLUG00000010200	HFM1	58	65.789	Myotis_lucifugus
ENSAPOG00000005304	hfm1	99	81.395	ENSNBRG00000002910	hfm1	100	81.395	Neolamprologus_brichardi
ENSAPOG00000005304	hfm1	100	63.636	ENSNLEG00000010285	HFM1	63	63.636	Nomascus_leucogenys
ENSAPOG00000005304	hfm1	86	66.887	ENSMEUG00000015788	HFM1	53	66.887	Notamacropus_eugenii
ENSAPOG00000005304	hfm1	94	61.244	ENSOPRG00000013916	HFM1	58	61.244	Ochotona_princeps
ENSAPOG00000005304	hfm1	93	83.794	ENSONIG00000010590	hfm1	77	87.906	Oreochromis_niloticus
ENSAPOG00000005304	hfm1	91	82.995	ENSORLG00000026844	hfm1	100	82.995	Oryzias_latipes
ENSAPOG00000005304	hfm1	100	70.192	ENSORLG00020002951	hfm1	70	70.192	Oryzias_latipes_hni
ENSAPOG00000005304	hfm1	99	79.352	ENSOMEG00000016474	hfm1	62	79.352	Oryzias_melastigma
ENSAPOG00000005304	hfm1	100	65.711	ENSOGAG00000032369	HFM1	68	65.711	Otolemur_garnettii
ENSAPOG00000005304	hfm1	94	66.507	ENSOARG00000015812	HFM1	58	66.507	Ovis_aries
ENSAPOG00000005304	hfm1	100	65.425	ENSPPAG00000024582	HFM1	69	65.425	Pan_paniscus
ENSAPOG00000005304	hfm1	95	65.758	ENSPPRG00000003270	HFM1	58	65.758	Panthera_pardus
ENSAPOG00000005304	hfm1	95	65.758	ENSPTIG00000018881	HFM1	58	65.758	Panthera_tigris_altaica
ENSAPOG00000005304	hfm1	100	65.765	ENSPTRG00000000948	HFM1	63	65.765	Pan_troglodytes
ENSAPOG00000005304	hfm1	100	64.726	ENSPANG00000009838	HFM1	64	64.726	Papio_anubis
ENSAPOG00000005304	hfm1	98	71.479	ENSPKIG00000003810	hfm1	99	71.479	Paramormyrops_kingsleyae
ENSAPOG00000005304	hfm1	93	81.281	ENSPMGG00000011059	hfm1	99	81.281	Periophthalmus_magnuspinnatus
ENSAPOG00000005304	hfm1	94	64.790	ENSPEMG00000022852	Hfm1	58	64.790	Peromyscus_maniculatus_bairdii
ENSAPOG00000005304	hfm1	94	65.990	ENSPCIG00000014233	HFM1	57	65.990	Phascolarctos_cinereus
ENSAPOG00000005304	hfm1	90	86.358	ENSPFOG00000017194	hfm1	76	86.358	Poecilia_formosa
ENSAPOG00000005304	hfm1	96	86.225	ENSPLAG00000000571	hfm1	78	86.225	Poecilia_latipinna
ENSAPOG00000005304	hfm1	96	86.093	ENSPMEG00000019475	hfm1	78	86.093	Poecilia_mexicana
ENSAPOG00000005304	hfm1	96	85.563	ENSPREG00000007803	hfm1	100	82.019	Poecilia_reticulata
ENSAPOG00000005304	hfm1	100	65.192	ENSPPYG00000001163	HFM1	64	65.192	Pongo_abelii
ENSAPOG00000005304	hfm1	96	60.070	ENSPVAG00000009713	HFM1	61	60.070	Pteropus_vampyrus
ENSAPOG00000005304	hfm1	99	82.380	ENSPNYG00000001795	hfm1	100	82.380	Pundamilia_nyererei
ENSAPOG00000005304	hfm1	99	77.460	ENSPNAG00000010865	hfm1	88	77.460	Pygocentrus_nattereri
ENSAPOG00000005304	hfm1	100	64.790	ENSRNOG00000023299	Hfm1	62	64.790	Rattus_norvegicus
ENSAPOG00000005304	hfm1	100	65.521	ENSRROG00000045569	HFM1	63	65.521	Rhinopithecus_roxellana
ENSAPOG00000005304	hfm1	100	65.311	ENSSBOG00000027456	HFM1	63	65.311	Saimiri_boliviensis_boliviensis
ENSAPOG00000005304	hfm1	65	69.573	ENSSHAG00000014616	-	66	69.573	Sarcophilus_harrisii
ENSAPOG00000005304	hfm1	100	73.981	ENSSFOG00015020129	hfm1	59	73.981	Scleropages_formosus
ENSAPOG00000005304	hfm1	93	85.560	ENSSMAG00000006907	hfm1	81	85.560	Scophthalmus_maximus
ENSAPOG00000005304	hfm1	100	88.618	ENSSDUG00000011424	hfm1	100	88.618	Seriola_dumerili
ENSAPOG00000005304	hfm1	100	87.615	ENSSLDG00000016386	hfm1	100	87.615	Seriola_lalandi_dorsalis
ENSAPOG00000005304	hfm1	100	92.334	ENSSPAG00000001023	hfm1	100	92.334	Stegastes_partitus
ENSAPOG00000005304	hfm1	94	66.746	ENSSSCG00000006912	HFM1	61	66.746	Sus_scrofa
ENSAPOG00000005304	hfm1	93	66.224	ENSTGUG00000006172	HFM1	86	66.224	Taeniopygia_guttata
ENSAPOG00000005304	hfm1	55	79.579	ENSTNIG00000006962	hfm1	97	79.579	Tetraodon_nigroviridis
ENSAPOG00000005304	hfm1	94	66.029	ENSTTRG00000013933	HFM1	59	66.029	Tursiops_truncatus
ENSAPOG00000005304	hfm1	94	63.876	ENSVPAG00000011331	HFM1	58	63.876	Vicugna_pacos
ENSAPOG00000005304	hfm1	91	65.884	ENSVVUG00000020760	HFM1	81	65.884	Vulpes_vulpes
ENSAPOG00000005304	hfm1	99	81.995	ENSXMAG00000004178	hfm1	100	81.995	Xiphophorus_maculatus