EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAPOG00000008259 (Gene tree)
Gene ID: 110963420
Gene Symbol: a1cf
Alias: acf
Full Name: APOBEC1 complementation factor
Gene Type: protein_coding
Species: Acanthochromis_polyacanthus
Status: putative
Strand: Plus strand
Length: 18189 bases
Position: chrMVNR01001145.1:48277-66465
Accession: 110963420
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAPOP00000025260	DND1_DSRM	PF14709.7	6.1e-26	1	1
ENSAPOP00000006424	DND1_DSRM	PF14709.7	7.2e-26	1	1
ENSAPOP00000025260	RRM_1	PF00076.22	2.8e-41	1	3
ENSAPOP00000025260	RRM_1	PF00076.22	2.8e-41	2	3
ENSAPOP00000025260	RRM_1	PF00076.22	2.8e-41	3	3
ENSAPOP00000006424	RRM_1	PF00076.22	4.1e-41	1	3
ENSAPOP00000006424	RRM_1	PF00076.22	4.1e-41	2	3
ENSAPOP00000006424	RRM_1	PF00076.22	4.1e-41	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAPOT00000006676	-	2208	XM_022211793	ENSAPOP00000006424	610 (aa)	XP_022067485	UPI000B8F4191
ENSAPOT00000006706	-	3733	-	ENSAPOP00000025260	563 (aa)	-	-

Gene Model

Click here to download ENSAPOG00000008259's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAPOG00000008259's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAPOG00000008259	a1cf	87	48.992	ENSAPOG00000009209	rbm46	83	61.491
ENSAPOG00000008259	a1cf	52	53.925	ENSAPOG00000006236	hnrnpr	55	48.696
ENSAPOG00000008259	a1cf	90	53.592	ENSAPOG00000011062	rbm47	79	52.741
ENSAPOG00000008259	a1cf	52	54.949	ENSAPOG00000013389	syncripl	63	49.565

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAPOG00000008259	a1cf	100	74.242	ENSG00000148584	A1CF	100	88.119	Homo_sapiens
ENSAPOG00000008259	a1cf	100	72.712	ENSAMEG00000000523	A1CF	100	73.378	Ailuropoda_melanoleuca
ENSAPOG00000008259	a1cf	100	83.526	ENSACIG00000008632	a1cf	100	83.361	Amphilophus_citrinellus
ENSAPOG00000008259	a1cf	100	94.898	ENSAOCG00000023744	a1cf	100	94.898	Amphiprion_ocellaris
ENSAPOG00000008259	a1cf	100	95.082	ENSAPEG00000009537	a1cf	100	95.082	Amphiprion_percula
ENSAPOG00000008259	a1cf	100	87.375	ENSATEG00000013720	a1cf	100	87.043	Anabas_testudineus
ENSAPOG00000008259	a1cf	100	73.045	ENSAPLG00000002964	A1CF	100	72.879	Anas_platyrhynchos
ENSAPOG00000008259	a1cf	100	73.649	ENSACAG00000015269	A1CF	100	73.480	Anolis_carolinensis
ENSAPOG00000008259	a1cf	100	74.916	ENSANAG00000019974	A1CF	100	74.916	Aotus_nancymaae
ENSAPOG00000008259	a1cf	100	83.529	ENSACLG00000017428	a1cf	100	84.370	Astatotilapia_calliptera
ENSAPOG00000008259	a1cf	100	72.381	ENSAMXG00000018180	a1cf	100	72.459	Astyanax_mexicanus
ENSAPOG00000008259	a1cf	100	74.454	ENSBTAG00000021195	A1CF	100	74.454	Bos_taurus
ENSAPOG00000008259	a1cf	100	73.754	ENSCJAG00000005045	A1CF	100	73.754	Callithrix_jacchus
ENSAPOG00000008259	a1cf	100	72.955	ENSCAFG00000015581	A1CF	100	73.167	Canis_familiaris
ENSAPOG00000008259	a1cf	100	72.955	ENSCAFG00020026421	A1CF	99	82.566	Canis_lupus_dingo
ENSAPOG00000008259	a1cf	100	73.964	ENSCHIG00000020411	A1CF	100	73.964	Capra_hircus
ENSAPOG00000008259	a1cf	94	74.597	ENSTSYG00000001755	A1CF	100	74.776	Carlito_syrichta
ENSAPOG00000008259	a1cf	100	73.761	ENSCAPG00000017386	A1CF	100	73.469	Cavia_aperea
ENSAPOG00000008259	a1cf	100	72.924	ENSCPOG00000009807	A1CF	100	72.924	Cavia_porcellus
ENSAPOG00000008259	a1cf	100	73.544	ENSCCAG00000018168	A1CF	100	73.544	Cebus_capucinus
ENSAPOG00000008259	a1cf	100	74.536	ENSCATG00000043715	A1CF	100	74.536	Cercocebus_atys
ENSAPOG00000008259	a1cf	100	73.013	ENSCLAG00000010424	A1CF	100	73.179	Chinchilla_lanigera
ENSAPOG00000008259	a1cf	100	73.544	ENSCSAG00000007032	A1CF	100	73.544	Chlorocebus_sabaeus
ENSAPOG00000008259	a1cf	97	71.138	ENSCHOG00000009089	A1CF	98	71.138	Choloepus_hoffmanni
ENSAPOG00000008259	a1cf	100	73.710	ENSCPBG00000026464	A1CF	100	73.378	Chrysemys_picta_bellii
ENSAPOG00000008259	a1cf	100	73.544	ENSCANG00000038032	A1CF	100	73.544	Colobus_angolensis_palliatus
ENSAPOG00000008259	a1cf	100	72.803	ENSCGRG00001017413	A1cf	100	72.968	Cricetulus_griseus_chok1gshd
ENSAPOG00000008259	a1cf	100	72.020	ENSCGRG00000017332	A1cf	100	72.471	Cricetulus_griseus_crigri
ENSAPOG00000008259	a1cf	100	81.758	ENSCSEG00000002361	a1cf	100	81.758	Cynoglossus_semilaevis
ENSAPOG00000008259	a1cf	100	86.545	ENSCVAG00000010520	a1cf	100	86.877	Cyprinodon_variegatus
ENSAPOG00000008259	a1cf	100	79.730	ENSDARG00000002968	a1cf	100	79.899	Danio_rerio
ENSAPOG00000008259	a1cf	100	72.924	ENSDNOG00000002829	A1CF	100	72.924	Dasypus_novemcinctus
ENSAPOG00000008259	a1cf	83	84.058	ENSETEG00000012527	A1CF	80	84.058	Echinops_telfairi
ENSAPOG00000008259	a1cf	100	73.223	ENSEASG00005012924	A1CF	100	73.388	Equus_asinus_asinus
ENSAPOG00000008259	a1cf	100	72.893	ENSECAG00000010424	A1CF	100	73.058	Equus_caballus
ENSAPOG00000008259	a1cf	79	65.086	ENSEEUG00000000013	A1CF	97	65.848	Erinaceus_europaeus
ENSAPOG00000008259	a1cf	100	78.010	ENSELUG00000003159	a1cf	100	77.649	Esox_lucius
ENSAPOG00000008259	a1cf	100	73.524	ENSFCAG00000011179	A1CF	100	74.199	Felis_catus
ENSAPOG00000008259	a1cf	100	75.717	ENSFALG00000013183	A1CF	100	75.548	Ficedula_albicollis
ENSAPOG00000008259	a1cf	100	73.613	ENSFDAG00000019371	A1CF	100	73.613	Fukomys_damarensis
ENSAPOG00000008259	a1cf	100	79.043	ENSFHEG00000019652	a1cf	96	89.844	Fundulus_heteroclitus
ENSAPOG00000008259	a1cf	100	80.452	ENSGMOG00000018943	a1cf	100	79.483	Gadus_morhua
ENSAPOG00000008259	a1cf	95	72.712	ENSGALG00000003765	A1CF	96	73.239	Gallus_gallus
ENSAPOG00000008259	a1cf	100	78.904	ENSGAFG00000014868	a1cf	100	79.236	Gambusia_affinis
ENSAPOG00000008259	a1cf	100	81.789	ENSGACG00000010241	a1cf	100	81.789	Gasterosteus_aculeatus
ENSAPOG00000008259	a1cf	96	72.569	ENSGAGG00000016508	A1CF	98	72.222	Gopherus_agassizii
ENSAPOG00000008259	a1cf	100	73.256	ENSGGOG00000009670	A1CF	100	73.256	Gorilla_gorilla
ENSAPOG00000008259	a1cf	100	83.690	ENSHBUG00000021959	a1cf	100	84.514	Haplochromis_burtoni
ENSAPOG00000008259	a1cf	100	72.637	ENSHGLG00000008955	A1CF	100	72.803	Heterocephalus_glaber_female
ENSAPOG00000008259	a1cf	100	71.973	ENSHGLG00100000518	A1CF	100	72.139	Heterocephalus_glaber_male
ENSAPOG00000008259	a1cf	100	73.376	ENSHCOG00000017669	a1cf	100	74.795	Hippocampus_comes
ENSAPOG00000008259	a1cf	91	82.194	ENSIPUG00000010367	a1cf	95	82.123	Ictalurus_punctatus
ENSAPOG00000008259	a1cf	100	83.466	ENSKMAG00000006568	a1cf	100	84.897	Kryptolebias_marmoratus
ENSAPOG00000008259	a1cf	99	85.920	ENSLBEG00000020994	a1cf	99	85.714	Labrus_bergylta
ENSAPOG00000008259	a1cf	100	76.650	ENSLACG00000008061	A1CF	100	76.007	Latimeria_chalumnae
ENSAPOG00000008259	a1cf	100	77.815	ENSLOCG00000006302	a1cf	100	77.815	Lepisosteus_oculatus
ENSAPOG00000008259	a1cf	100	72.305	ENSLAFG00000015462	A1CF	100	73.466	Loxodonta_africana
ENSAPOG00000008259	a1cf	100	74.536	ENSMFAG00000035948	A1CF	100	74.536	Macaca_fascicularis
ENSAPOG00000008259	a1cf	100	74.536	ENSMMUG00000007077	A1CF	100	74.536	Macaca_mulatta
ENSAPOG00000008259	a1cf	100	74.368	ENSMNEG00000031454	A1CF	100	74.368	Macaca_nemestrina
ENSAPOG00000008259	a1cf	100	73.544	ENSMLEG00000037223	A1CF	100	73.544	Mandrillus_leucophaeus
ENSAPOG00000008259	a1cf	100	85.216	ENSMAMG00000010402	a1cf	100	84.884	Mastacembelus_armatus
ENSAPOG00000008259	a1cf	100	84.602	ENSMZEG00005013245	a1cf	100	84.602	Maylandia_zebra
ENSAPOG00000008259	a1cf	100	73.090	ENSMGAG00000001507	A1CF	100	72.924	Meleagris_gallopavo
ENSAPOG00000008259	a1cf	100	72.471	ENSMAUG00000007422	A1cf	100	72.637	Mesocricetus_auratus
ENSAPOG00000008259	a1cf	100	73.411	ENSMICG00000003377	A1CF	100	74.415	Microcebus_murinus
ENSAPOG00000008259	a1cf	100	73.134	ENSMOCG00000021536	A1cf	100	73.300	Microtus_ochrogaster
ENSAPOG00000008259	a1cf	100	74.155	ENSMMOG00000009422	a1cf	100	75.000	Mola_mola
ENSAPOG00000008259	a1cf	93	75.506	ENSMODG00000016478	A1CF	99	76.427	Monodelphis_domestica
ENSAPOG00000008259	a1cf	100	83.012	ENSMALG00000012992	a1cf	93	93.229	Monopterus_albus
ENSAPOG00000008259	a1cf	100	73.109	MGP_CAROLIEiJ_G0022873	A1cf	100	73.277	Mus_caroli
ENSAPOG00000008259	a1cf	100	73.109	ENSMUSG00000052595	A1cf	99	83.333	Mus_musculus
ENSAPOG00000008259	a1cf	100	72.437	MGP_PahariEiJ_G0014366	A1cf	100	72.437	Mus_pahari
ENSAPOG00000008259	a1cf	100	73.187	MGP_SPRETEiJ_G0023792	A1cf	100	73.356	Mus_spretus
ENSAPOG00000008259	a1cf	100	68.386	ENSMPUG00000016971	A1CF	100	68.220	Mustela_putorius_furo
ENSAPOG00000008259	a1cf	100	72.848	ENSMLUG00000016071	A1CF	100	73.466	Myotis_lucifugus
ENSAPOG00000008259	a1cf	100	72.803	ENSNGAG00000015136	A1cf	100	72.803	Nannospalax_galili
ENSAPOG00000008259	a1cf	100	83.690	ENSNBRG00000001712	a1cf	100	84.514	Neolamprologus_brichardi
ENSAPOG00000008259	a1cf	100	73.466	ENSNLEG00000012028	A1CF	100	73.632	Nomascus_leucogenys
ENSAPOG00000008259	a1cf	94	73.882	ENSMEUG00000015909	A1CF	100	74.061	Notamacropus_eugenii
ENSAPOG00000008259	a1cf	91	66.004	ENSOPRG00000010667	A1CF	97	65.981	Ochotona_princeps
ENSAPOG00000008259	a1cf	100	84.514	ENSONIG00000019105	a1cf	100	84.679	Oreochromis_niloticus
ENSAPOG00000008259	a1cf	79	75.269	ENSOANG00000007360	A1CF	99	75.269	Ornithorhynchus_anatinus
ENSAPOG00000008259	a1cf	100	73.993	ENSOCUG00000011587	A1CF	100	74.329	Oryctolagus_cuniculus
ENSAPOG00000008259	a1cf	100	83.089	ENSORLG00000013342	a1cf	100	81.759	Oryzias_latipes
ENSAPOG00000008259	a1cf	100	83.840	ENSORLG00020000586	a1cf	100	82.692	Oryzias_latipes_hni
ENSAPOG00000008259	a1cf	100	83.840	ENSORLG00015018569	a1cf	100	82.692	Oryzias_latipes_hsok
ENSAPOG00000008259	a1cf	100	83.416	ENSOMEG00000013531	a1cf	100	83.085	Oryzias_melastigma
ENSAPOG00000008259	a1cf	100	73.045	ENSOGAG00000012884	A1CF	100	74.043	Otolemur_garnettii
ENSAPOG00000008259	a1cf	100	73.632	ENSOARG00000013695	A1CF	100	73.632	Ovis_aries
ENSAPOG00000008259	a1cf	97	71.747	ENSPPAG00000028115	A1CF	99	77.200	Pan_paniscus
ENSAPOG00000008259	a1cf	100	72.546	ENSPPRG00000012180	A1CF	100	73.211	Panthera_pardus
ENSAPOG00000008259	a1cf	100	72.546	ENSPTIG00000021223	A1CF	100	73.211	Panthera_tigris_altaica
ENSAPOG00000008259	a1cf	100	74.242	ENSPTRG00000002508	A1CF	100	74.242	Pan_troglodytes
ENSAPOG00000008259	a1cf	100	74.536	ENSPANG00000021988	A1CF	100	74.536	Papio_anubis
ENSAPOG00000008259	a1cf	100	78.170	ENSPKIG00000025176	a1cf	100	77.980	Paramormyrops_kingsleyae
ENSAPOG00000008259	a1cf	100	74.030	ENSPSIG00000010318	A1CF	100	73.862	Pelodiscus_sinensis
ENSAPOG00000008259	a1cf	89	86.089	ENSPMGG00000013359	a1cf	99	75.350	Periophthalmus_magnuspinnatus
ENSAPOG00000008259	a1cf	100	72.803	ENSPEMG00000015021	A1cf	100	72.637	Peromyscus_maniculatus_bairdii
ENSAPOG00000008259	a1cf	100	73.187	ENSPCIG00000002175	A1CF	100	74.030	Phascolarctos_cinereus
ENSAPOG00000008259	a1cf	100	84.039	ENSPFOG00000006683	a1cf	100	84.665	Poecilia_formosa
ENSAPOG00000008259	a1cf	100	84.039	ENSPFOG00000007437	-	100	84.665	Poecilia_formosa
ENSAPOG00000008259	a1cf	100	85.149	ENSPLAG00000000026	a1cf	100	85.314	Poecilia_latipinna
ENSAPOG00000008259	a1cf	100	85.149	ENSPLAG00000001210	-	100	85.314	Poecilia_latipinna
ENSAPOG00000008259	a1cf	100	75.908	ENSPMEG00000000921	a1cf	100	76.073	Poecilia_mexicana
ENSAPOG00000008259	a1cf	100	74.760	ENSPMEG00000015529	-	100	75.559	Poecilia_mexicana
ENSAPOG00000008259	a1cf	100	83.713	ENSPREG00000016298	a1cf	100	84.345	Poecilia_reticulata
ENSAPOG00000008259	a1cf	100	74.454	ENSPPYG00000002819	A1CF	100	74.622	Pongo_abelii
ENSAPOG00000008259	a1cf	80	54.582	ENSPCAG00000006463	A1CF	62	65.312	Procavia_capensis
ENSAPOG00000008259	a1cf	100	72.351	ENSPCOG00000024172	A1CF	100	73.344	Propithecus_coquereli
ENSAPOG00000008259	a1cf	100	83.546	ENSPNYG00000017944	a1cf	100	84.505	Pundamilia_nyererei
ENSAPOG00000008259	a1cf	100	80.865	ENSPNAG00000007704	a1cf	100	81.032	Pygocentrus_nattereri
ENSAPOG00000008259	a1cf	100	73.445	ENSRNOG00000033195	A1cf	100	73.613	Rattus_norvegicus
ENSAPOG00000008259	a1cf	100	68.159	ENSRBIG00000042892	A1CF	100	72.047	Rhinopithecus_bieti
ENSAPOG00000008259	a1cf	100	73.544	ENSRROG00000041398	A1CF	100	73.544	Rhinopithecus_roxellana
ENSAPOG00000008259	a1cf	100	73.877	ENSSBOG00000021930	A1CF	100	73.877	Saimiri_boliviensis_boliviensis
ENSAPOG00000008259	a1cf	100	74.030	ENSSHAG00000005096	A1CF	100	74.030	Sarcophilus_harrisii
ENSAPOG00000008259	a1cf	100	80.333	ENSSFOG00015011774	a1cf	100	80.500	Scleropages_formosus
ENSAPOG00000008259	a1cf	100	82.907	ENSSMAG00000013271	a1cf	100	83.546	Scophthalmus_maximus
ENSAPOG00000008259	a1cf	100	87.162	ENSSDUG00000013930	a1cf	100	87.162	Seriola_dumerili
ENSAPOG00000008259	a1cf	100	84.000	ENSSLDG00000004290	a1cf	92	95.312	Seriola_lalandi_dorsalis
ENSAPOG00000008259	a1cf	94	66.135	ENSSARG00000005940	A1CF	95	66.135	Sorex_araneus
ENSAPOG00000008259	a1cf	95	73.322	ENSSPUG00000006797	A1CF	95	73.322	Sphenodon_punctatus
ENSAPOG00000008259	a1cf	100	73.798	ENSSSCG00000010431	A1CF	100	73.798	Sus_scrofa
ENSAPOG00000008259	a1cf	100	74.380	ENSTGUG00000005090	A1CF	100	74.380	Taeniopygia_guttata
ENSAPOG00000008259	a1cf	100	81.717	ENSTRUG00000001982	a1cf	100	80.702	Takifugu_rubripes
ENSAPOG00000008259	a1cf	100	81.905	ENSTNIG00000003580	a1cf	100	80.732	Tetraodon_nigroviridis
ENSAPOG00000008259	a1cf	97	69.097	ENSTTRG00000013190	A1CF	95	69.097	Tursiops_truncatus
ENSAPOG00000008259	a1cf	100	74.030	ENSUAMG00000020065	A1CF	100	74.199	Ursus_americanus
ENSAPOG00000008259	a1cf	100	72.712	ENSUMAG00000011162	A1CF	100	72.712	Ursus_maritimus
ENSAPOG00000008259	a1cf	86	70.769	ENSVPAG00000006130	A1CF	86	70.769	Vicugna_pacos
ENSAPOG00000008259	a1cf	100	74.493	ENSVVUG00000002504	A1CF	100	74.324	Vulpes_vulpes
ENSAPOG00000008259	a1cf	100	67.208	ENSXETG00000006611	a1cf	100	66.060	Xenopus_tropicalis
ENSAPOG00000008259	a1cf	100	85.880	ENSXCOG00000003302	a1cf	100	86.047	Xiphophorus_couchianus
ENSAPOG00000008259	a1cf	100	85.191	ENSXMAG00000016703	a1cf	100	84.918	Xiphophorus_maculatus