EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAPOG00000010833 (Gene tree)
Gene ID: 110956894
Gene Symbol: lsm1
Alias: zgc:101136
Full Name: LSM1 homolog%2C mRNA degradation associated
Gene Type: protein_coding
Species: Acanthochromis_polyacanthus
Status: putative
Strand: Minus strand
Length: 5214 bases
Position: chrMVNR01000502.1:62453-67666
Accession: 110956894
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAPOP00000008660	LSM	PF01423.22	5e-14	1	1
ENSAPOP00000008657	LSM	PF01423.22	6.6e-13	1	1
ENSAPOP00000026791	LSM	PF01423.22	8.7e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAPOT00000002872	-	1422	XM_022202649	ENSAPOP00000008660	133 (aa)	XP_022058341	UPI000B8FCCA0
ENSAPOT00000002882	-	1494	-	ENSAPOP00000008657	157 (aa)	-	-
ENSAPOT00000002908	-	450	-	ENSAPOP00000026791	149 (aa)	-	-

Gene Model

Click here to download ENSAPOG00000010833's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAPOG00000010833's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAPOG00000010833	lsm1	51	34.783	ENSAPOG00000008649	lsm8	72	34.783

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAPOG00000010833	lsm1	100	85.714	ENSG00000175324	LSM1	100	85.714	Homo_sapiens
ENSAPOG00000010833	lsm1	100	85.714	ENSAMEG00000011141	LSM1	100	85.714	Ailuropoda_melanoleuca
ENSAPOG00000010833	lsm1	58	100.000	ENSACIG00000019593	lsm1	64	100.000	Amphilophus_citrinellus
ENSAPOG00000010833	lsm1	100	100.000	ENSAOCG00000017096	lsm1	100	100.000	Amphiprion_ocellaris
ENSAPOG00000010833	lsm1	100	100.000	ENSAOCG00000017997	-	100	100.000	Amphiprion_ocellaris
ENSAPOG00000010833	lsm1	100	100.000	ENSAPEG00000011669	lsm1	100	100.000	Amphiprion_percula
ENSAPOG00000010833	lsm1	100	98.496	ENSATEG00000022266	lsm1	100	98.496	Anabas_testudineus
ENSAPOG00000010833	lsm1	100	85.714	ENSANAG00000027785	LSM1	100	85.714	Aotus_nancymaae
ENSAPOG00000010833	lsm1	100	97.744	ENSACLG00000011400	lsm1	100	97.744	Astatotilapia_calliptera
ENSAPOG00000010833	lsm1	100	81.955	ENSAMXG00000005441	lsm1	100	81.955	Astyanax_mexicanus
ENSAPOG00000010833	lsm1	100	84.962	ENSBTAG00000001612	LSM1	100	84.962	Bos_taurus
ENSAPOG00000010833	lsm1	70	55.914	WBGene00003076	lsm-1	73	55.914	Caenorhabditis_elegans
ENSAPOG00000010833	lsm1	100	84.962	ENSCJAG00000048015	LSM1	100	84.962	Callithrix_jacchus
ENSAPOG00000010833	lsm1	100	85.714	ENSCAFG00000006113	LSM1	100	85.714	Canis_familiaris
ENSAPOG00000010833	lsm1	100	85.714	ENSCAFG00020001822	LSM1	100	85.714	Canis_lupus_dingo
ENSAPOG00000010833	lsm1	100	85.714	ENSCHIG00000013194	LSM1	100	85.714	Capra_hircus
ENSAPOG00000010833	lsm1	100	85.714	ENSTSYG00000010394	LSM1	100	85.714	Carlito_syrichta
ENSAPOG00000010833	lsm1	100	85.714	ENSCPOG00000032671	LSM1	100	85.714	Cavia_porcellus
ENSAPOG00000010833	lsm1	100	85.714	ENSCCAG00000037171	LSM1	100	85.714	Cebus_capucinus
ENSAPOG00000010833	lsm1	100	85.714	ENSCATG00000020377	LSM1	100	85.714	Cercocebus_atys
ENSAPOG00000010833	lsm1	100	84.211	ENSCLAG00000001137	LSM1	100	84.211	Chinchilla_lanigera
ENSAPOG00000010833	lsm1	100	85.714	ENSCSAG00000015485	LSM1	100	85.714	Chlorocebus_sabaeus
ENSAPOG00000010833	lsm1	100	84.962	ENSCHOG00000006030	LSM1	100	84.962	Choloepus_hoffmanni
ENSAPOG00000010833	lsm1	95	79.528	ENSCPBG00000006569	LSM1	86	79.528	Chrysemys_picta_bellii
ENSAPOG00000010833	lsm1	99	63.636	ENSCING00000013536	-	100	62.879	Ciona_intestinalis
ENSAPOG00000010833	lsm1	100	85.714	ENSCANG00000019173	LSM1	100	85.714	Colobus_angolensis_palliatus
ENSAPOG00000010833	lsm1	100	84.962	ENSCGRG00001024560	-	100	84.962	Cricetulus_griseus_chok1gshd
ENSAPOG00000010833	lsm1	80	72.072	ENSCGRG00001002259	-	97	72.072	Cricetulus_griseus_chok1gshd
ENSAPOG00000010833	lsm1	80	72.072	ENSCGRG00000013603	-	97	72.072	Cricetulus_griseus_crigri
ENSAPOG00000010833	lsm1	100	84.962	ENSCGRG00000006554	-	100	84.962	Cricetulus_griseus_crigri
ENSAPOG00000010833	lsm1	100	97.744	ENSCSEG00000010570	lsm1	92	97.744	Cynoglossus_semilaevis
ENSAPOG00000010833	lsm1	100	95.489	ENSCSEG00000008319	lsm1	92	95.489	Cynoglossus_semilaevis
ENSAPOG00000010833	lsm1	100	96.992	ENSCVAG00000003871	lsm1	100	96.992	Cyprinodon_variegatus
ENSAPOG00000010833	lsm1	100	81.203	ENSDARG00000043177	lsm1	100	81.203	Danio_rerio
ENSAPOG00000010833	lsm1	100	84.962	ENSDNOG00000032911	-	100	84.962	Dasypus_novemcinctus
ENSAPOG00000010833	lsm1	89	67.227	ENSDNOG00000046620	-	100	67.227	Dasypus_novemcinctus
ENSAPOG00000010833	lsm1	100	85.714	ENSDNOG00000046387	-	100	85.714	Dasypus_novemcinctus
ENSAPOG00000010833	lsm1	99	81.061	ENSDNOG00000030989	-	99	81.061	Dasypus_novemcinctus
ENSAPOG00000010833	lsm1	100	85.714	ENSDORG00000028172	Lsm1	100	85.714	Dipodomys_ordii
ENSAPOG00000010833	lsm1	93	59.677	FBgn0261067	LSm1	91	59.677	Drosophila_melanogaster
ENSAPOG00000010833	lsm1	100	84.211	ENSEASG00005016677	LSM1	100	84.211	Equus_asinus_asinus
ENSAPOG00000010833	lsm1	100	84.211	ENSECAG00000010461	LSM1	100	84.211	Equus_caballus
ENSAPOG00000010833	lsm1	72	77.083	ENSEEUG00000015181	LSM1	97	77.083	Erinaceus_europaeus
ENSAPOG00000010833	lsm1	100	78.947	ENSELUG00000023374	lsm1	100	78.947	Esox_lucius
ENSAPOG00000010833	lsm1	100	93.233	ENSELUG00000002322	lsm1	100	93.233	Esox_lucius
ENSAPOG00000010833	lsm1	100	85.714	ENSFCAG00000039335	LSM1	100	85.714	Felis_catus
ENSAPOG00000010833	lsm1	89	83.051	ENSFALG00000006723	LSM1	100	83.898	Ficedula_albicollis
ENSAPOG00000010833	lsm1	100	85.714	ENSFDAG00000007658	LSM1	100	85.714	Fukomys_damarensis
ENSAPOG00000010833	lsm1	100	96.992	ENSFHEG00000009556	lsm1	100	96.992	Fundulus_heteroclitus
ENSAPOG00000010833	lsm1	100	95.489	ENSGMOG00000016651	lsm1	98	95.489	Gadus_morhua
ENSAPOG00000010833	lsm1	100	82.707	ENSGALG00000003245	LSM1	100	82.707	Gallus_gallus
ENSAPOG00000010833	lsm1	100	96.992	ENSGAFG00000011355	lsm1	100	96.992	Gambusia_affinis
ENSAPOG00000010833	lsm1	100	96.241	ENSGACG00000011763	lsm1	98	96.241	Gasterosteus_aculeatus
ENSAPOG00000010833	lsm1	100	85.714	ENSGAGG00000024065	LSM1	100	85.714	Gopherus_agassizii
ENSAPOG00000010833	lsm1	100	85.714	ENSGGOG00000022658	LSM1	100	85.714	Gorilla_gorilla
ENSAPOG00000010833	lsm1	100	97.744	ENSHBUG00000010897	lsm1	100	97.744	Haplochromis_burtoni
ENSAPOG00000010833	lsm1	100	85.714	ENSHGLG00000005711	LSM1	100	85.714	Heterocephalus_glaber_female
ENSAPOG00000010833	lsm1	100	69.925	ENSHGLG00000017574	-	93	78.182	Heterocephalus_glaber_female
ENSAPOG00000010833	lsm1	100	85.714	ENSHGLG00100017660	LSM1	100	85.714	Heterocephalus_glaber_male
ENSAPOG00000010833	lsm1	100	69.925	ENSHGLG00100012152	-	93	78.182	Heterocephalus_glaber_male
ENSAPOG00000010833	lsm1	100	97.744	ENSHCOG00000017233	lsm1	100	97.744	Hippocampus_comes
ENSAPOG00000010833	lsm1	100	80.451	ENSIPUG00000002312	LSM1	100	80.451	Ictalurus_punctatus
ENSAPOG00000010833	lsm1	62	87.952	ENSSTOG00000026870	LSM1	100	87.952	Ictidomys_tridecemlineatus
ENSAPOG00000010833	lsm1	100	84.962	ENSJJAG00000014605	-	100	84.962	Jaculus_jaculus
ENSAPOG00000010833	lsm1	100	98.496	ENSKMAG00000003016	lsm1	100	98.496	Kryptolebias_marmoratus
ENSAPOG00000010833	lsm1	100	97.744	ENSLBEG00000022352	lsm1	100	97.744	Labrus_bergylta
ENSAPOG00000010833	lsm1	90	81.667	ENSLACG00000010947	LSM1	98	83.193	Latimeria_chalumnae
ENSAPOG00000010833	lsm1	100	86.466	ENSLOCG00000015149	lsm1	100	86.466	Lepisosteus_oculatus
ENSAPOG00000010833	lsm1	100	85.714	ENSLAFG00000003534	LSM1	100	85.714	Loxodonta_africana
ENSAPOG00000010833	lsm1	100	85.714	ENSMFAG00000032661	LSM1	100	85.714	Macaca_fascicularis
ENSAPOG00000010833	lsm1	100	85.714	ENSMLEG00000034535	LSM1	100	85.714	Mandrillus_leucophaeus
ENSAPOG00000010833	lsm1	100	97.744	ENSMAMG00000007464	lsm1	100	97.744	Mastacembelus_armatus
ENSAPOG00000010833	lsm1	100	97.744	ENSMZEG00005010321	lsm1	100	97.744	Maylandia_zebra
ENSAPOG00000010833	lsm1	100	82.707	ENSMGAG00000002125	LSM1	100	82.707	Meleagris_gallopavo
ENSAPOG00000010833	lsm1	100	85.714	ENSMICG00000030726	LSM1	100	85.714	Microcebus_murinus
ENSAPOG00000010833	lsm1	100	84.962	ENSMOCG00000022817	Lsm1	100	84.962	Microtus_ochrogaster
ENSAPOG00000010833	lsm1	100	98.496	ENSMMOG00000015466	lsm1	100	98.496	Mola_mola
ENSAPOG00000010833	lsm1	100	86.466	ENSMODG00000010732	-	100	86.466	Monodelphis_domestica
ENSAPOG00000010833	lsm1	58	100.000	ENSMALG00000001478	lsm1	82	100.000	Monopterus_albus
ENSAPOG00000010833	lsm1	100	85.714	MGP_CAROLIEiJ_G0030930	Lsm1	100	85.714	Mus_caroli
ENSAPOG00000010833	lsm1	100	85.714	ENSMUSG00000037296	Lsm1	100	85.714	Mus_musculus
ENSAPOG00000010833	lsm1	100	85.714	MGP_PahariEiJ_G0021400	Lsm1	100	85.714	Mus_pahari
ENSAPOG00000010833	lsm1	100	85.714	MGP_SPRETEiJ_G0032049	Lsm1	100	85.714	Mus_spretus
ENSAPOG00000010833	lsm1	100	86.466	ENSMPUG00000009883	LSM1	100	86.466	Mustela_putorius_furo
ENSAPOG00000010833	lsm1	100	85.714	ENSMLUG00000003734	LSM1	100	85.714	Myotis_lucifugus
ENSAPOG00000010833	lsm1	100	84.962	ENSNGAG00000003753	Lsm1	100	84.962	Nannospalax_galili
ENSAPOG00000010833	lsm1	58	100.000	ENSNBRG00000017370	lsm1	66	100.000	Neolamprologus_brichardi
ENSAPOG00000010833	lsm1	100	85.714	ENSNLEG00000029390	LSM1	100	85.714	Nomascus_leucogenys
ENSAPOG00000010833	lsm1	100	86.466	ENSMEUG00000014077	LSM1	100	86.466	Notamacropus_eugenii
ENSAPOG00000010833	lsm1	88	79.487	ENSOPRG00000000333	LSM1	100	79.487	Ochotona_princeps
ENSAPOG00000010833	lsm1	100	85.714	ENSODEG00000004834	LSM1	100	85.714	Octodon_degus
ENSAPOG00000010833	lsm1	100	97.744	ENSONIG00000010782	lsm1	100	97.744	Oreochromis_niloticus
ENSAPOG00000010833	lsm1	100	86.466	ENSOANG00000003256	LSM1	100	86.466	Ornithorhynchus_anatinus
ENSAPOG00000010833	lsm1	100	85.714	ENSOCUG00000015399	LSM1	100	85.714	Oryctolagus_cuniculus
ENSAPOG00000010833	lsm1	100	96.992	ENSORLG00000030288	lsm1	100	96.992	Oryzias_latipes
ENSAPOG00000010833	lsm1	100	96.992	ENSORLG00020003941	lsm1	100	96.992	Oryzias_latipes_hni
ENSAPOG00000010833	lsm1	100	95.489	ENSORLG00020006213	-	86	95.489	Oryzias_latipes_hni
ENSAPOG00000010833	lsm1	100	96.992	ENSORLG00015018350	lsm1	100	96.992	Oryzias_latipes_hsok
ENSAPOG00000010833	lsm1	100	96.992	ENSOMEG00000012454	lsm1	100	96.992	Oryzias_melastigma
ENSAPOG00000010833	lsm1	100	85.714	ENSOGAG00000015161	LSM1	100	85.714	Otolemur_garnettii
ENSAPOG00000010833	lsm1	100	85.714	ENSOARG00000001317	LSM1	100	85.714	Ovis_aries
ENSAPOG00000010833	lsm1	100	85.714	ENSPPAG00000032279	LSM1	100	85.714	Pan_paniscus
ENSAPOG00000010833	lsm1	100	85.714	ENSPPRG00000014172	-	100	85.714	Panthera_pardus
ENSAPOG00000010833	lsm1	100	85.714	ENSPTIG00000010289	LSM1	100	85.714	Panthera_tigris_altaica
ENSAPOG00000010833	lsm1	100	85.714	ENSPTRG00000020169	LSM1	100	85.714	Pan_troglodytes
ENSAPOG00000010833	lsm1	100	85.714	ENSPANG00000008814	LSM1	100	85.714	Papio_anubis
ENSAPOG00000010833	lsm1	100	78.195	ENSPKIG00000019409	LSM1	99	78.195	Paramormyrops_kingsleyae
ENSAPOG00000010833	lsm1	100	87.218	ENSPKIG00000001839	lsm1	100	87.218	Paramormyrops_kingsleyae
ENSAPOG00000010833	lsm1	98	80.000	ENSPSIG00000012563	LSM1	99	80.000	Pelodiscus_sinensis
ENSAPOG00000010833	lsm1	58	100.000	ENSPMGG00000022999	lsm1	73	100.000	Periophthalmus_magnuspinnatus
ENSAPOG00000010833	lsm1	85	71.681	ENSPMAG00000002671	lsm1	100	71.681	Petromyzon_marinus
ENSAPOG00000010833	lsm1	100	84.962	ENSPCIG00000008880	LSM1	100	84.962	Phascolarctos_cinereus
ENSAPOG00000010833	lsm1	100	96.992	ENSPFOG00000016029	lsm1	100	96.992	Poecilia_formosa
ENSAPOG00000010833	lsm1	100	96.992	ENSPLAG00000007879	lsm1	100	96.992	Poecilia_latipinna
ENSAPOG00000010833	lsm1	100	96.992	ENSPMEG00000023550	lsm1	100	96.992	Poecilia_mexicana
ENSAPOG00000010833	lsm1	100	96.992	ENSPREG00000009574	lsm1	100	96.992	Poecilia_reticulata
ENSAPOG00000010833	lsm1	100	85.714	ENSPPYG00000018521	LSM1	100	85.714	Pongo_abelii
ENSAPOG00000010833	lsm1	100	85.714	ENSPCOG00000020901	-	100	85.714	Propithecus_coquereli
ENSAPOG00000010833	lsm1	100	85.714	ENSPVAG00000006016	LSM1	100	85.714	Pteropus_vampyrus
ENSAPOG00000010833	lsm1	100	97.744	ENSPNYG00000018067	lsm1	100	97.744	Pundamilia_nyererei
ENSAPOG00000010833	lsm1	100	81.203	ENSPNAG00000013707	lsm1	100	81.203	Pygocentrus_nattereri
ENSAPOG00000010833	lsm1	100	83.459	ENSRNOG00000015375	Lsm1	100	83.459	Rattus_norvegicus
ENSAPOG00000010833	lsm1	100	85.714	ENSRBIG00000027449	LSM1	100	85.714	Rhinopithecus_bieti
ENSAPOG00000010833	lsm1	100	85.714	ENSRROG00000036074	LSM1	100	85.714	Rhinopithecus_roxellana
ENSAPOG00000010833	lsm1	80	43.363	YJL124C	LSM1	74	38.636	Saccharomyces_cerevisiae
ENSAPOG00000010833	lsm1	100	86.466	ENSSHAG00000017260	LSM1	100	86.466	Sarcophilus_harrisii
ENSAPOG00000010833	lsm1	100	86.466	ENSSFOG00015019528	lsm1	100	86.466	Scleropages_formosus
ENSAPOG00000010833	lsm1	100	98.496	ENSSMAG00000004930	lsm1	100	98.496	Scophthalmus_maximus
ENSAPOG00000010833	lsm1	100	96.992	ENSSDUG00000021823	lsm1	100	96.992	Seriola_dumerili
ENSAPOG00000010833	lsm1	100	96.992	ENSSLDG00000012154	lsm1	100	96.992	Seriola_lalandi_dorsalis
ENSAPOG00000010833	lsm1	100	85.714	ENSSPUG00000014878	LSM1	100	85.714	Sphenodon_punctatus
ENSAPOG00000010833	lsm1	100	99.248	ENSSPAG00000020548	lsm1	100	99.248	Stegastes_partitus
ENSAPOG00000010833	lsm1	100	84.211	ENSSSCG00000039058	LSM1	100	84.211	Sus_scrofa
ENSAPOG00000010833	lsm1	100	84.962	ENSTGUG00000004793	LSM1	100	84.962	Taeniopygia_guttata
ENSAPOG00000010833	lsm1	100	93.985	ENSTRUG00000025239	lsm1	100	93.985	Takifugu_rubripes
ENSAPOG00000010833	lsm1	100	90.977	ENSTNIG00000004055	lsm1	100	90.977	Tetraodon_nigroviridis
ENSAPOG00000010833	lsm1	88	83.761	ENSTBEG00000015884	LSM1	100	83.761	Tupaia_belangeri
ENSAPOG00000010833	lsm1	100	85.714	ENSTTRG00000004482	LSM1	100	85.714	Tursiops_truncatus
ENSAPOG00000010833	lsm1	100	85.714	ENSUAMG00000004103	LSM1	100	85.714	Ursus_americanus
ENSAPOG00000010833	lsm1	100	85.714	ENSUMAG00000009132	LSM1	100	85.714	Ursus_maritimus
ENSAPOG00000010833	lsm1	58	90.909	ENSVPAG00000011593	LSM1	100	90.909	Vicugna_pacos
ENSAPOG00000010833	lsm1	100	85.714	ENSVVUG00000020191	LSM1	100	85.714	Vulpes_vulpes
ENSAPOG00000010833	lsm1	61	65.432	ENSVVUG00000014880	-	86	65.432	Vulpes_vulpes
ENSAPOG00000010833	lsm1	100	81.022	ENSXETG00000009004	lsm1	100	81.022	Xenopus_tropicalis
ENSAPOG00000010833	lsm1	100	95.489	ENSXCOG00000015631	lsm1	100	95.489	Xiphophorus_couchianus
ENSAPOG00000010833	lsm1	100	95.489	ENSXMAG00000026637	lsm1	100	95.489	Xiphophorus_maculatus