EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAPOG00000010916 (Gene tree)
Gene ID: 110959183
Gene Symbol: -
Alias: HUPF1|KIAA0221|NORF1|RENT1|pNORF1|smg-2
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Acanthochromis_polyacanthus
Status: putative
Strand: Minus strand
Length: 19208 bases
Position: chrMVNR01000670.1:325965-345172
Accession: 110959183
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAPOP00000008674	UPF1_Zn_bind	PF09416.10	1e-74	1	1
ENSAPOP00000008674	ResIII	PF04851.15	3.1e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAPOT00000002849	-	8208	XM_022205960	ENSAPOP00000008674	1101 (aa)	XP_022061652	UPI000B905204

Gene Model

Click here to download ENSAPOG00000010916's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAPOG00000010916's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAPOG00000010916	-	100	93.309	ENSAPOG00000023773	upf1	100	93.309

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAPOG00000010916	-	100	92.507	ENSG00000005007	UPF1	100	92.507	Homo_sapiens
ENSAPOG00000010916	-	100	92.014	ENSAMEG00000011474	UPF1	100	92.014	Ailuropoda_melanoleuca
ENSAPOG00000010916	-	93	98.539	ENSACIG00000010985	-	100	98.539	Amphilophus_citrinellus
ENSAPOG00000010916	-	100	93.370	ENSACIG00000019949	upf1	100	93.370	Amphilophus_citrinellus
ENSAPOG00000010916	-	100	92.825	ENSAOCG00000018519	upf1	100	93.280	Amphiprion_ocellaris
ENSAPOG00000010916	-	100	99.637	ENSAOCG00000006352	-	100	99.637	Amphiprion_ocellaris
ENSAPOG00000010916	-	100	99.546	ENSAPEG00000006292	-	100	99.546	Amphiprion_percula
ENSAPOG00000010916	-	100	92.825	ENSAPEG00000016344	upf1	100	93.280	Amphiprion_percula
ENSAPOG00000010916	-	100	91.548	ENSATEG00000017867	upf1	100	92.576	Anabas_testudineus
ENSAPOG00000010916	-	100	99.546	ENSATEG00000016606	-	100	99.546	Anabas_testudineus
ENSAPOG00000010916	-	95	94.129	ENSAPLG00000009175	UPF1	100	94.034	Anas_platyrhynchos
ENSAPOG00000010916	-	95	92.593	ENSANAG00000024107	UPF1	95	92.498	Aotus_nancymaae
ENSAPOG00000010916	-	100	93.279	ENSACLG00000007181	upf1	100	93.279	Astatotilapia_calliptera
ENSAPOG00000010916	-	100	98.911	ENSACLG00000022630	-	100	98.911	Astatotilapia_calliptera
ENSAPOG00000010916	-	100	94.923	ENSAMXG00000042187	upf1	100	95.104	Astyanax_mexicanus
ENSAPOG00000010916	-	100	92.028	ENSBTAG00000020922	UPF1	100	92.028	Bos_taurus
ENSAPOG00000010916	-	97	49.493	WBGene00004880	smg-2	99	49.267	Caenorhabditis_elegans
ENSAPOG00000010916	-	100	91.608	ENSCJAG00000019627	UPF1	100	91.608	Callithrix_jacchus
ENSAPOG00000010916	-	100	91.784	ENSCAFG00000014578	UPF1	100	91.784	Canis_familiaris
ENSAPOG00000010916	-	100	92.685	ENSCAFG00020012347	UPF1	100	92.685	Canis_lupus_dingo
ENSAPOG00000010916	-	100	92.934	ENSCHIG00000011018	UPF1	100	92.934	Capra_hircus
ENSAPOG00000010916	-	95	93.732	ENSTSYG00000008877	UPF1	98	93.637	Carlito_syrichta
ENSAPOG00000010916	-	96	92.958	ENSCAPG00000005758	UPF1	95	93.542	Cavia_aperea
ENSAPOG00000010916	-	100	92.722	ENSCPOG00000025463	UPF1	100	92.633	Cavia_porcellus
ENSAPOG00000010916	-	100	92.507	ENSCCAG00000032175	UPF1	100	92.507	Cebus_capucinus
ENSAPOG00000010916	-	94	94.179	ENSCATG00000040306	UPF1	97	94.084	Cercocebus_atys
ENSAPOG00000010916	-	95	93.922	ENSCLAG00000004037	UPF1	99	93.827	Chinchilla_lanigera
ENSAPOG00000010916	-	100	92.507	ENSCSAG00000005276	UPF1	100	92.507	Chlorocebus_sabaeus
ENSAPOG00000010916	-	100	92.735	ENSCPBG00000012513	UPF1	100	92.646	Chrysemys_picta_bellii
ENSAPOG00000010916	-	77	79.508	ENSCING00000021399	-	99	78.546	Ciona_intestinalis
ENSAPOG00000010916	-	99	73.226	ENSCSAVG00000006533	-	99	73.495	Ciona_savignyi
ENSAPOG00000010916	-	95	93.922	ENSCANG00000029819	UPF1	97	93.827	Colobus_angolensis_palliatus
ENSAPOG00000010916	-	100	92.473	ENSCGRG00001021067	Upf1	100	92.473	Cricetulus_griseus_chok1gshd
ENSAPOG00000010916	-	95	93.447	ENSCGRG00000013480	Upf1	98	93.352	Cricetulus_griseus_crigri
ENSAPOG00000010916	-	100	88.123	ENSCSEG00000017239	upf1	100	87.884	Cynoglossus_semilaevis
ENSAPOG00000010916	-	100	98.365	ENSCSEG00000016159	-	100	98.365	Cynoglossus_semilaevis
ENSAPOG00000010916	-	100	98.274	ENSCVAG00000010561	upf1	100	98.274	Cyprinodon_variegatus
ENSAPOG00000010916	-	100	94.288	ENSDARG00000016302	upf1	100	94.560	Danio_rerio
ENSAPOG00000010916	-	95	91.453	ENSDORG00000009984	Upf1	95	91.358	Dipodomys_ordii
ENSAPOG00000010916	-	86	71.534	FBgn0030354	Upf1	81	71.162	Drosophila_melanogaster
ENSAPOG00000010916	-	54	86.612	ENSEBUG00000010069	upf1	96	86.942	Eptatretus_burgeri
ENSAPOG00000010916	-	100	92.844	ENSEASG00005006549	UPF1	100	92.844	Equus_asinus_asinus
ENSAPOG00000010916	-	100	92.844	ENSECAG00000010639	UPF1	100	92.844	Equus_caballus
ENSAPOG00000010916	-	100	95.491	ENSELUG00000012916	-	100	95.491	Esox_lucius
ENSAPOG00000010916	-	100	92.690	ENSELUG00000020917	upf1	100	92.238	Esox_lucius
ENSAPOG00000010916	-	100	91.696	ENSFCAG00000009757	UPF1	100	91.696	Felis_catus
ENSAPOG00000010916	-	95	94.662	ENSFALG00000009312	UPF1	96	94.566	Ficedula_albicollis
ENSAPOG00000010916	-	95	93.827	ENSFDAG00000014816	UPF1	99	93.732	Fukomys_damarensis
ENSAPOG00000010916	-	86	99.093	ENSFHEG00000016276	-	96	99.093	Fundulus_heteroclitus
ENSAPOG00000010916	-	100	89.705	ENSFHEG00000006428	upf1	100	89.267	Fundulus_heteroclitus
ENSAPOG00000010916	-	100	95.238	ENSGMOG00000007541	upf1	100	95.238	Gadus_morhua
ENSAPOG00000010916	-	100	92.672	ENSGALG00000003220	UPF1	100	92.583	Gallus_gallus
ENSAPOG00000010916	-	63	94.669	ENSGAFG00000015443	-	85	94.669	Gambusia_affinis
ENSAPOG00000010916	-	100	98.274	ENSGAFG00000004831	upf1	100	98.274	Gambusia_affinis
ENSAPOG00000010916	-	100	93.243	ENSGAGG00000022217	UPF1	100	93.243	Gopherus_agassizii
ENSAPOG00000010916	-	95	94.914	ENSGGOG00000002608	UPF1	99	94.818	Gorilla_gorilla
ENSAPOG00000010916	-	86	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSAPOG00000010916	-	90	86.207	ENSHBUG00000014694	upf1	100	86.207	Haplochromis_burtoni
ENSAPOG00000010916	-	100	91.343	ENSHGLG00000010900	UPF1	100	91.343	Heterocephalus_glaber_female
ENSAPOG00000010916	-	95	92.118	ENSHGLG00100005904	UPF1	96	92.023	Heterocephalus_glaber_male
ENSAPOG00000010916	-	100	98.276	ENSHCOG00000008918	upf1	100	98.276	Hippocampus_comes
ENSAPOG00000010916	-	100	94.923	ENSIPUG00000005108	UPF1	100	95.104	Ictalurus_punctatus
ENSAPOG00000010916	-	100	92.507	ENSSTOG00000009196	UPF1	100	92.507	Ictidomys_tridecemlineatus
ENSAPOG00000010916	-	100	91.378	ENSJJAG00000023151	Upf1	100	91.378	Jaculus_jaculus
ENSAPOG00000010916	-	100	98.819	ENSKMAG00000004962	upf1	100	98.819	Kryptolebias_marmoratus
ENSAPOG00000010916	-	100	91.846	ENSLBEG00000014862	upf1	100	92.473	Labrus_bergylta
ENSAPOG00000010916	-	100	98.639	ENSLBEG00000027848	-	100	98.639	Labrus_bergylta
ENSAPOG00000010916	-	63	94.699	ENSLACG00000008482	UPF1	100	94.699	Latimeria_chalumnae
ENSAPOG00000010916	-	100	95.913	ENSLOCG00000002072	upf1	100	95.913	Lepisosteus_oculatus
ENSAPOG00000010916	-	100	91.327	ENSLAFG00000014963	UPF1	100	91.327	Loxodonta_africana
ENSAPOG00000010916	-	100	92.260	ENSMFAG00000037748	UPF1	100	92.260	Macaca_fascicularis
ENSAPOG00000010916	-	100	92.014	ENSMMUG00000023286	UPF1	100	92.014	Macaca_mulatta
ENSAPOG00000010916	-	100	92.260	ENSMNEG00000000046	UPF1	100	92.260	Macaca_nemestrina
ENSAPOG00000010916	-	95	93.922	ENSMLEG00000028404	UPF1	99	93.827	Mandrillus_leucophaeus
ENSAPOG00000010916	-	100	99.183	ENSMAMG00000006231	-	100	99.183	Mastacembelus_armatus
ENSAPOG00000010916	-	100	92.218	ENSMAMG00000006229	upf1	100	92.844	Mastacembelus_armatus
ENSAPOG00000010916	-	100	98.911	ENSMZEG00005016386	-	100	98.911	Maylandia_zebra
ENSAPOG00000010916	-	100	92.273	ENSMZEG00005003489	upf1	100	92.543	Maylandia_zebra
ENSAPOG00000010916	-	95	93.643	ENSMGAG00000004745	UPF1	100	93.548	Meleagris_gallopavo
ENSAPOG00000010916	-	96	92.164	ENSMAUG00000011398	Upf1	95	93.352	Mesocricetus_auratus
ENSAPOG00000010916	-	100	92.417	ENSMICG00000001659	UPF1	100	92.417	Microcebus_murinus
ENSAPOG00000010916	-	100	91.571	ENSMOCG00000005699	Upf1	100	91.659	Microtus_ochrogaster
ENSAPOG00000010916	-	95	96.842	ENSMMOG00000007537	-	99	96.842	Mola_mola
ENSAPOG00000010916	-	100	92.552	ENSMMOG00000007881	upf1	100	92.922	Mola_mola
ENSAPOG00000010916	-	100	91.366	ENSMODG00000003689	UPF1	100	91.454	Monodelphis_domestica
ENSAPOG00000010916	-	100	92.461	ENSMALG00000000144	upf1	100	92.391	Monopterus_albus
ENSAPOG00000010916	-	100	97.647	ENSMALG00000018100	-	100	97.647	Monopterus_albus
ENSAPOG00000010916	-	100	92.384	MGP_CAROLIEiJ_G0031142	Upf1	100	92.384	Mus_caroli
ENSAPOG00000010916	-	100	92.384	ENSMUSG00000058301	Upf1	100	92.384	Mus_musculus
ENSAPOG00000010916	-	100	92.384	MGP_PahariEiJ_G0021607	Upf1	100	92.384	Mus_pahari
ENSAPOG00000010916	-	100	92.384	MGP_SPRETEiJ_G0032260	Upf1	100	92.384	Mus_spretus
ENSAPOG00000010916	-	100	92.685	ENSMPUG00000015516	UPF1	100	92.685	Mustela_putorius_furo
ENSAPOG00000010916	-	99	92.480	ENSMLUG00000012122	UPF1	99	92.480	Myotis_lucifugus
ENSAPOG00000010916	-	100	91.062	ENSNGAG00000024107	Upf1	100	91.062	Nannospalax_galili
ENSAPOG00000010916	-	100	95.276	ENSNBRG00000022069	-	100	97.864	Neolamprologus_brichardi
ENSAPOG00000010916	-	100	91.462	ENSNBRG00000000670	upf1	100	91.462	Neolamprologus_brichardi
ENSAPOG00000010916	-	95	88.129	ENSNLEG00000006062	UPF1	99	88.034	Nomascus_leucogenys
ENSAPOG00000010916	-	83	88.672	ENSMEUG00000014146	-	83	88.477	Notamacropus_eugenii
ENSAPOG00000010916	-	95	87.908	ENSOPRG00000014018	UPF1	99	87.812	Ochotona_princeps
ENSAPOG00000010916	-	100	92.716	ENSODEG00000012426	UPF1	100	92.626	Octodon_degus
ENSAPOG00000010916	-	100	92.453	ENSONIG00000010452	upf1	100	92.722	Oreochromis_niloticus
ENSAPOG00000010916	-	100	99.002	ENSONIG00000012729	-	100	99.002	Oreochromis_niloticus
ENSAPOG00000010916	-	100	91.681	ENSOANG00000004568	UPF1	100	90.733	Ornithorhynchus_anatinus
ENSAPOG00000010916	-	100	97.911	ENSORLG00000008453	upf1	100	97.911	Oryzias_latipes
ENSAPOG00000010916	-	100	97.822	ENSORLG00020014758	upf1	100	97.822	Oryzias_latipes_hni
ENSAPOG00000010916	-	100	97.822	ENSORLG00015010165	upf1	100	97.822	Oryzias_latipes_hsok
ENSAPOG00000010916	-	100	98.183	ENSOMEG00000003665	upf1	100	98.183	Oryzias_melastigma
ENSAPOG00000010916	-	100	92.596	ENSOGAG00000012866	UPF1	100	92.596	Otolemur_garnettii
ENSAPOG00000010916	-	96	90.993	ENSOARG00000010739	UPF1	100	90.901	Ovis_aries
ENSAPOG00000010916	-	95	93.922	ENSPPAG00000043884	UPF1	96	93.827	Pan_paniscus
ENSAPOG00000010916	-	100	91.696	ENSPPRG00000023470	UPF1	100	91.696	Panthera_pardus
ENSAPOG00000010916	-	95	92.912	ENSPTIG00000010159	UPF1	99	92.816	Panthera_tigris_altaica
ENSAPOG00000010916	-	100	92.260	ENSPTRG00000010721	UPF1	100	92.260	Pan_troglodytes
ENSAPOG00000010916	-	100	92.260	ENSPANG00000008847	UPF1	100	92.260	Papio_anubis
ENSAPOG00000010916	-	91	95.238	ENSPKIG00000006069	upf1	95	96.173	Paramormyrops_kingsleyae
ENSAPOG00000010916	-	70	93.611	ENSPSIG00000009491	UPF1	100	93.481	Pelodiscus_sinensis
ENSAPOG00000010916	-	100	91.584	ENSPMGG00000017327	upf1	100	91.674	Periophthalmus_magnuspinnatus
ENSAPOG00000010916	-	100	91.571	ENSPEMG00000001085	Upf1	100	91.571	Peromyscus_maniculatus_bairdii
ENSAPOG00000010916	-	100	87.658	ENSPMAG00000001206	upf1	100	87.207	Petromyzon_marinus
ENSAPOG00000010916	-	100	92.768	ENSPCIG00000006156	UPF1	100	92.768	Phascolarctos_cinereus
ENSAPOG00000010916	-	100	91.449	ENSPLAG00000018155	-	100	90.999	Poecilia_latipinna
ENSAPOG00000010916	-	100	98.365	ENSPLAG00000016232	-	100	98.365	Poecilia_latipinna
ENSAPOG00000010916	-	100	98.276	ENSPMEG00000016319	-	100	98.276	Poecilia_mexicana
ENSAPOG00000010916	-	100	92.022	ENSPMEG00000011443	-	100	91.553	Poecilia_mexicana
ENSAPOG00000010916	-	100	91.734	ENSPREG00000009940	upf1	100	91.285	Poecilia_reticulata
ENSAPOG00000010916	-	100	98.093	ENSPREG00000011247	-	100	98.093	Poecilia_reticulata
ENSAPOG00000010916	-	100	86.749	ENSPPYG00000009752	UPF1	100	86.572	Pongo_abelii
ENSAPOG00000010916	-	75	98.653	ENSPCAG00000012962	UPF1	76	98.653	Procavia_capensis
ENSAPOG00000010916	-	100	92.185	ENSPCOG00000023813	UPF1	100	92.185	Propithecus_coquereli
ENSAPOG00000010916	-	68	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSAPOG00000010916	-	100	98.820	ENSPNYG00000016731	-	100	98.820	Pundamilia_nyererei
ENSAPOG00000010916	-	100	92.273	ENSPNYG00000003694	upf1	100	92.543	Pundamilia_nyererei
ENSAPOG00000010916	-	100	94.470	ENSPNAG00000025614	upf1	100	94.651	Pygocentrus_nattereri
ENSAPOG00000010916	-	100	92.384	ENSRNOG00000020134	Upf1	100	92.384	Rattus_norvegicus
ENSAPOG00000010916	-	95	91.548	ENSRBIG00000013894	UPF1	98	94.645	Rhinopithecus_bieti
ENSAPOG00000010916	-	95	93.922	ENSRROG00000040935	UPF1	98	94.645	Rhinopithecus_roxellana
ENSAPOG00000010916	-	76	55.778	YMR080C	NAM7	87	55.778	Saccharomyces_cerevisiae
ENSAPOG00000010916	-	94	94.179	ENSSBOG00000023632	UPF1	96	94.084	Saimiri_boliviensis_boliviensis
ENSAPOG00000010916	-	95	93.839	ENSSHAG00000010499	UPF1	100	93.744	Sarcophilus_harrisii
ENSAPOG00000010916	-	100	95.644	ENSSFOG00015021095	upf1	100	95.644	Scleropages_formosus
ENSAPOG00000010916	-	100	99.093	ENSSMAG00000021018	-	100	99.093	Scophthalmus_maximus
ENSAPOG00000010916	-	100	91.219	ENSSMAG00000005055	upf1	100	91.935	Scophthalmus_maximus
ENSAPOG00000010916	-	100	99.637	ENSSDUG00000009629	-	100	99.637	Seriola_dumerili
ENSAPOG00000010916	-	100	92.039	ENSSDUG00000013320	upf1	100	92.755	Seriola_dumerili
ENSAPOG00000010916	-	100	99.637	ENSSLDG00000006878	-	100	99.637	Seriola_lalandi_dorsalis
ENSAPOG00000010916	-	100	92.870	ENSSLDG00000020868	upf1	100	93.231	Seriola_lalandi_dorsalis
ENSAPOG00000010916	-	100	93.076	ENSSPUG00000010538	UPF1	100	93.076	Sphenodon_punctatus
ENSAPOG00000010916	-	100	91.123	ENSSPAG00000000003	upf1	100	91.008	Stegastes_partitus
ENSAPOG00000010916	-	100	99.273	ENSSPAG00000011521	-	100	99.273	Stegastes_partitus
ENSAPOG00000010916	-	100	92.844	ENSSSCG00000039301	UPF1	99	94.828	Sus_scrofa
ENSAPOG00000010916	-	82	86.809	ENSTGUG00000001057	UPF1	100	91.124	Taeniopygia_guttata
ENSAPOG00000010916	-	100	92.650	ENSTRUG00000000150	upf1	100	92.468	Takifugu_rubripes
ENSAPOG00000010916	-	100	97.548	ENSTRUG00000005131	-	100	97.548	Takifugu_rubripes
ENSAPOG00000010916	-	100	89.177	ENSTTRG00000011544	UPF1	100	89.088	Tursiops_truncatus
ENSAPOG00000010916	-	100	92.596	ENSUAMG00000007093	UPF1	100	92.596	Ursus_americanus
ENSAPOG00000010916	-	95	94.923	ENSUMAG00000006652	UPF1	99	95.238	Ursus_maritimus
ENSAPOG00000010916	-	100	92.685	ENSVVUG00000007797	UPF1	100	92.685	Vulpes_vulpes
ENSAPOG00000010916	-	100	79.736	ENSXETG00000013602	upf1	100	79.736	Xenopus_tropicalis
ENSAPOG00000010916	-	94	98.353	ENSXCOG00000005764	-	100	98.353	Xiphophorus_couchianus
ENSAPOG00000010916	-	97	91.541	ENSXCOG00000015275	-	96	91.541	Xiphophorus_couchianus
ENSAPOG00000010916	-	100	98.094	ENSXMAG00000002540	-	100	98.094	Xiphophorus_maculatus
ENSAPOG00000010916	-	100	91.735	ENSXMAG00000001703	-	100	91.735	Xiphophorus_maculatus