EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAPOG00000015946 (Gene tree)
Gene ID: 110969239
Gene Symbol: pspc1
Alias: fj85a06|wu:fj85a06|zgc:136470
Full Name: paraspeckle component 1-like
Gene Type: protein_coding
Species: Acanthochromis_polyacanthus
Status: putative
Strand: Minus strand
Length: 18750 bases
Position: chrMVNR01002302.1:53065-71814
Accession: 110969239
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAPOP00000029777	RRM_1	PF00076.22	5.8e-33	1	2
ENSAPOP00000029777	RRM_1	PF00076.22	5.8e-33	2	2
ENSAPOP00000029778	RRM_1	PF00076.22	1.1e-32	1	2
ENSAPOP00000029778	RRM_1	PF00076.22	1.1e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAPOT00000021231	-	1269	XM_022219286	ENSAPOP00000029777	422 (aa)	XP_022074978	-
ENSAPOT00000021278	-	6631	XM_022219285	ENSAPOP00000029778	522 (aa)	XP_022074977	UPI000B8F6671

Gene Model

Click here to download ENSAPOG00000015946's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAPOG00000015946's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAPOG00000015946	pspc1	77	60.442	ENSAPOG00000023320	nono	83	61.499
ENSAPOG00000015946	pspc1	77	61.042	ENSAPOG00000024257	sfpq	57	59.500

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAPOG00000015946	pspc1	79	73.721	ENSG00000121390	PSPC1	82	81.173	Homo_sapiens
ENSAPOG00000015946	pspc1	88	68.530	ENSAMEG00000017420	PSPC1	88	70.650	Ailuropoda_melanoleuca
ENSAPOG00000015946	pspc1	100	78.927	ENSACIG00000018695	pspc1	100	77.969	Amphilophus_citrinellus
ENSAPOG00000015946	pspc1	100	97.901	ENSAOCG00000005279	pspc1	100	97.901	Amphiprion_ocellaris
ENSAPOG00000015946	pspc1	100	97.893	ENSAPEG00000015927	pspc1	100	97.893	Amphiprion_percula
ENSAPOG00000015946	pspc1	100	76.136	ENSATEG00000004878	pspc1	100	75.568	Anabas_testudineus
ENSAPOG00000015946	pspc1	71	65.344	ENSAPLG00000003643	SFPQ	82	57.451	Anas_platyrhynchos
ENSAPOG00000015946	pspc1	76	67.943	ENSAPLG00000006246	PSPC1	100	68.558	Anas_platyrhynchos
ENSAPOG00000015946	pspc1	61	71.984	ENSACAG00000013307	-	67	53.348	Anolis_carolinensis
ENSAPOG00000015946	pspc1	88	68.632	ENSACAG00000002093	PSPC1	88	69.072	Anolis_carolinensis
ENSAPOG00000015946	pspc1	87	69.392	ENSANAG00000000059	PSPC1	83	78.704	Aotus_nancymaae
ENSAPOG00000015946	pspc1	99	78.538	ENSACLG00000027220	pspc1	100	76.806	Astatotilapia_calliptera
ENSAPOG00000015946	pspc1	100	68.190	ENSAMXG00000036881	pspc1	100	68.556	Astyanax_mexicanus
ENSAPOG00000015946	pspc1	96	65.451	ENSBTAG00000003934	PSPC1	89	70.021	Bos_taurus
ENSAPOG00000015946	pspc1	87	69.392	ENSCJAG00000004554	PSPC1	88	70.860	Callithrix_jacchus
ENSAPOG00000015946	pspc1	79	73.721	ENSCAFG00020002009	PSPC1	83	81.173	Canis_lupus_dingo
ENSAPOG00000015946	pspc1	96	65.451	ENSCHIG00000016708	PSPC1	89	70.021	Capra_hircus
ENSAPOG00000015946	pspc1	76	63.723	ENSTSYG00000032882	PSPC1	88	62.350	Carlito_syrichta
ENSAPOG00000015946	pspc1	79	73.721	ENSCPOG00000000395	PSPC1	83	81.173	Cavia_porcellus
ENSAPOG00000015946	pspc1	87	69.392	ENSCCAG00000033498	PSPC1	88	71.069	Cebus_capucinus
ENSAPOG00000015946	pspc1	79	73.488	ENSCATG00000036434	PSPC1	90	81.173	Cercocebus_atys
ENSAPOG00000015946	pspc1	67	74.185	ENSCLAG00000005241	PSPC1	89	70.361	Chinchilla_lanigera
ENSAPOG00000015946	pspc1	84	65.301	ENSCHOG00000008913	PSPC1	91	65.714	Choloepus_hoffmanni
ENSAPOG00000015946	pspc1	89	68.182	ENSCPBG00000020859	PSPC1	90	68.712	Chrysemys_picta_bellii
ENSAPOG00000015946	pspc1	59	60.714	ENSCSAVG00000003533	-	52	61.372	Ciona_savignyi
ENSAPOG00000015946	pspc1	64	70.741	ENSCANG00000018948	PSPC1	87	82.824	Colobus_angolensis_palliatus
ENSAPOG00000015946	pspc1	88	68.776	ENSCGRG00001018368	Pspc1	88	70.650	Cricetulus_griseus_chok1gshd
ENSAPOG00000015946	pspc1	88	68.776	ENSCGRG00000011724	Pspc1	88	70.650	Cricetulus_griseus_crigri
ENSAPOG00000015946	pspc1	100	77.247	ENSCVAG00000007679	-	100	77.247	Cyprinodon_variegatus
ENSAPOG00000015946	pspc1	100	64.259	ENSDARG00000006621	pspc1	100	69.042	Danio_rerio
ENSAPOG00000015946	pspc1	89	68.313	ENSDNOG00000011078	PSPC1	91	69.450	Dasypus_novemcinctus
ENSAPOG00000015946	pspc1	96	62.619	ENSDORG00000016050	Pspc1	90	67.556	Dipodomys_ordii
ENSAPOG00000015946	pspc1	69	45.283	ENSEBUG00000010133	pspc1	75	47.038	Eptatretus_burgeri
ENSAPOG00000015946	pspc1	79	62.440	ENSEBUG00000003964	-	64	67.313	Eptatretus_burgeri
ENSAPOG00000015946	pspc1	88	68.763	ENSEASG00005000119	PSPC1	88	78.134	Equus_asinus_asinus
ENSAPOG00000015946	pspc1	88	68.763	ENSECAG00000017286	PSPC1	88	78.134	Equus_caballus
ENSAPOG00000015946	pspc1	62	70.385	ENSEEUG00000011288	-	51	70.385	Erinaceus_europaeus
ENSAPOG00000015946	pspc1	100	69.061	ENSELUG00000003746	pspc1	100	69.613	Esox_lucius
ENSAPOG00000015946	pspc1	79	73.953	ENSFCAG00000027841	PSPC1	83	81.173	Felis_catus
ENSAPOG00000015946	pspc1	99	63.148	ENSFALG00000008750	PSPC1	90	68.485	Ficedula_albicollis
ENSAPOG00000015946	pspc1	87	68.987	ENSFDAG00000002617	PSPC1	90	70.860	Fukomys_damarensis
ENSAPOG00000015946	pspc1	100	64.474	ENSGMOG00000015074	pspc1	100	64.850	Gadus_morhua
ENSAPOG00000015946	pspc1	88	69.053	ENSGALG00000017142	PSPC1	90	68.916	Gallus_gallus
ENSAPOG00000015946	pspc1	96	69.121	ENSGAFG00000006327	pspc1	81	80.867	Gambusia_affinis
ENSAPOG00000015946	pspc1	100	75.429	ENSGACG00000014901	pspc1	95	83.186	Gasterosteus_aculeatus
ENSAPOG00000015946	pspc1	71	65.691	ENSGAGG00000017325	-	67	57.050	Gopherus_agassizii
ENSAPOG00000015946	pspc1	89	68.182	ENSGAGG00000019164	PSPC1	90	68.712	Gopherus_agassizii
ENSAPOG00000015946	pspc1	79	73.721	ENSGGOG00000003414	PSPC1	82	81.173	Gorilla_gorilla
ENSAPOG00000015946	pspc1	100	86.015	ENSHBUG00000001139	pspc1	100	86.782	Haplochromis_burtoni
ENSAPOG00000015946	pspc1	87	69.409	ENSHGLG00000018811	PSPC1	89	70.860	Heterocephalus_glaber_female
ENSAPOG00000015946	pspc1	64	77.091	ENSHGLG00100007962	PSPC1	92	78.667	Heterocephalus_glaber_male
ENSAPOG00000015946	pspc1	79	78.795	ENSHCOG00000013251	pspc1	99	73.942	Hippocampus_comes
ENSAPOG00000015946	pspc1	100	70.654	ENSIPUG00000013192	pspc1	100	69.653	Ictalurus_punctatus
ENSAPOG00000015946	pspc1	88	68.763	ENSSTOG00000026833	PSPC1	82	81.173	Ictidomys_tridecemlineatus
ENSAPOG00000015946	pspc1	76	75.426	ENSJJAG00000018334	Pspc1	88	70.021	Jaculus_jaculus
ENSAPOG00000015946	pspc1	100	61.597	ENSKMAG00000013525	-	98	72.316	Kryptolebias_marmoratus
ENSAPOG00000015946	pspc1	99	79.026	ENSLBEG00000004474	pspc1	100	78.839	Labrus_bergylta
ENSAPOG00000015946	pspc1	100	61.679	ENSLACG00000010762	PSPC1	100	63.091	Latimeria_chalumnae
ENSAPOG00000015946	pspc1	92	70.303	ENSLOCG00000010832	pspc1	99	68.266	Lepisosteus_oculatus
ENSAPOG00000015946	pspc1	81	72.360	ENSLAFG00000010968	PSPC1	91	69.512	Loxodonta_africana
ENSAPOG00000015946	pspc1	79	73.488	ENSMFAG00000032728	PSPC1	91	81.231	Macaca_fascicularis
ENSAPOG00000015946	pspc1	79	73.488	ENSMMUG00000020262	PSPC1	88	81.173	Macaca_mulatta
ENSAPOG00000015946	pspc1	79	73.488	ENSMNEG00000027401	PSPC1	85	76.427	Macaca_nemestrina
ENSAPOG00000015946	pspc1	67	73.370	ENSMLEG00000039043	PSPC1	94	70.120	Mandrillus_leucophaeus
ENSAPOG00000015946	pspc1	100	83.992	ENSMAMG00000004333	pspc1	100	83.804	Mastacembelus_armatus
ENSAPOG00000015946	pspc1	99	78.538	ENSMZEG00005005726	pspc1	100	76.806	Maylandia_zebra
ENSAPOG00000015946	pspc1	77	67.780	ENSMGAG00000015134	PSPC1	100	68.471	Meleagris_gallopavo
ENSAPOG00000015946	pspc1	88	67.733	ENSMAUG00000021067	Pspc1	86	68.382	Mesocricetus_auratus
ENSAPOG00000015946	pspc1	92	68.390	ENSMICG00000013970	PSPC1	88	78.134	Microcebus_murinus
ENSAPOG00000015946	pspc1	77	74.163	ENSMOCG00000006060	Pspc1	90	69.610	Microtus_ochrogaster
ENSAPOG00000015946	pspc1	80	89.286	ENSMMOG00000004352	pspc1	71	89.286	Mola_mola
ENSAPOG00000015946	pspc1	81	72.998	ENSMODG00000008029	PSPC1	68	74.353	Monodelphis_domestica
ENSAPOG00000015946	pspc1	100	83.908	ENSMALG00000008914	pspc1	100	83.908	Monopterus_albus
ENSAPOG00000015946	pspc1	81	72.477	MGP_CAROLIEiJ_G0019341	Pspc1	89	75.000	Mus_caroli
ENSAPOG00000015946	pspc1	81	72.477	ENSMUSG00000021938	Pspc1	88	75.121	Mus_musculus
ENSAPOG00000015946	pspc1	81	72.477	MGP_PahariEiJ_G0030359	Pspc1	89	75.000	Mus_pahari
ENSAPOG00000015946	pspc1	81	72.477	MGP_SPRETEiJ_G0020232	Pspc1	88	75.121	Mus_spretus
ENSAPOG00000015946	pspc1	79	73.721	ENSMPUG00000013347	PSPC1	88	70.650	Mustela_putorius_furo
ENSAPOG00000015946	pspc1	79	73.441	ENSMLUG00000017663	PSPC1	89	69.792	Myotis_lucifugus
ENSAPOG00000015946	pspc1	93	67.928	ENSNGAG00000011271	Pspc1	88	70.440	Nannospalax_galili
ENSAPOG00000015946	pspc1	99	80.425	ENSNBRG00000014059	pspc1	99	79.953	Neolamprologus_brichardi
ENSAPOG00000015946	pspc1	79	73.721	ENSNLEG00000001294	PSPC1	88	70.440	Nomascus_leucogenys
ENSAPOG00000015946	pspc1	61	70.909	ENSMEUG00000000476	PSPC1	75	73.077	Notamacropus_eugenii
ENSAPOG00000015946	pspc1	88	63.941	ENSODEG00000019012	-	88	65.828	Octodon_degus
ENSAPOG00000015946	pspc1	88	60.833	ENSODEG00000007817	-	88	59.465	Octodon_degus
ENSAPOG00000015946	pspc1	100	87.165	ENSONIG00000012010	pspc1	99	87.931	Oreochromis_niloticus
ENSAPOG00000015946	pspc1	67	73.370	ENSOANG00000009017	-	100	69.856	Ornithorhynchus_anatinus
ENSAPOG00000015946	pspc1	81	59.238	ENSOANG00000011381	-	95	54.415	Ornithorhynchus_anatinus
ENSAPOG00000015946	pspc1	79	73.364	ENSOCUG00000006153	PSPC1	88	70.440	Oryctolagus_cuniculus
ENSAPOG00000015946	pspc1	100	78.244	ENSORLG00000004232	-	100	77.863	Oryzias_latipes
ENSAPOG00000015946	pspc1	100	78.626	ENSORLG00020000578	PSPC1	100	76.571	Oryzias_latipes_hni
ENSAPOG00000015946	pspc1	100	78.435	ENSORLG00015017480	pspc1	100	78.053	Oryzias_latipes_hsok
ENSAPOG00000015946	pspc1	79	73.953	ENSOGAG00000012643	PSPC1	88	70.860	Otolemur_garnettii
ENSAPOG00000015946	pspc1	87	68.632	ENSOARG00000014163	PSPC1	95	70.105	Ovis_aries
ENSAPOG00000015946	pspc1	77	72.393	ENSPPAG00000009836	PSPC1	92	81.173	Pan_paniscus
ENSAPOG00000015946	pspc1	79	73.953	ENSPPRG00000008833	PSPC1	88	70.440	Panthera_pardus
ENSAPOG00000015946	pspc1	67	73.641	ENSPTIG00000016917	PSPC1	84	69.639	Panthera_tigris_altaica
ENSAPOG00000015946	pspc1	76	75.669	ENSPTRG00000005677	PSPC1	82	81.173	Pan_troglodytes
ENSAPOG00000015946	pspc1	79	73.488	ENSPANG00000001992	PSPC1	89	81.231	Papio_anubis
ENSAPOG00000015946	pspc1	100	70.336	ENSPKIG00000003578	pspc1	100	70.709	Paramormyrops_kingsleyae
ENSAPOG00000015946	pspc1	91	66.937	ENSPSIG00000005168	PSPC1	90	67.951	Pelodiscus_sinensis
ENSAPOG00000015946	pspc1	77	73.636	ENSPMGG00000015135	pspc1	98	74.576	Periophthalmus_magnuspinnatus
ENSAPOG00000015946	pspc1	81	72.477	ENSPEMG00000015214	Pspc1	90	69.815	Peromyscus_maniculatus_bairdii
ENSAPOG00000015946	pspc1	66	44.444	ENSPMAG00000004618	pspc1	84	44.484	Petromyzon_marinus
ENSAPOG00000015946	pspc1	84	71.272	ENSPCIG00000017680	PSPC1	91	69.450	Phascolarctos_cinereus
ENSAPOG00000015946	pspc1	99	79.541	ENSPFOG00000003362	pspc1	100	80.497	Poecilia_formosa
ENSAPOG00000015946	pspc1	100	79.545	ENSPLAG00000011540	pspc1	100	80.492	Poecilia_latipinna
ENSAPOG00000015946	pspc1	82	54.713	ENSPLAG00000004407	-	53	55.128	Poecilia_latipinna
ENSAPOG00000015946	pspc1	100	79.167	ENSPMEG00000008322	pspc1	100	80.114	Poecilia_mexicana
ENSAPOG00000015946	pspc1	82	54.839	ENSPMEG00000001025	-	52	55.128	Poecilia_mexicana
ENSAPOG00000015946	pspc1	100	78.788	ENSPREG00000007786	pspc1	100	79.735	Poecilia_reticulata
ENSAPOG00000015946	pspc1	79	73.721	ENSPPYG00000005186	PSPC1	89	74.408	Pongo_abelii
ENSAPOG00000015946	pspc1	88	66.247	ENSPCOG00000014364	PSPC1	88	67.171	Propithecus_coquereli
ENSAPOG00000015946	pspc1	88	69.520	ENSPVAG00000005036	PSPC1	92	68.347	Pteropus_vampyrus
ENSAPOG00000015946	pspc1	99	79.009	ENSPNYG00000008893	pspc1	100	77.186	Pundamilia_nyererei
ENSAPOG00000015946	pspc1	100	70.544	ENSPNAG00000016511	pspc1	100	70.950	Pygocentrus_nattereri
ENSAPOG00000015946	pspc1	81	72.350	ENSRNOG00000020782	Pspc1	88	75.303	Rattus_norvegicus
ENSAPOG00000015946	pspc1	84	70.897	ENSRBIG00000036057	PSPC1	91	81.173	Rhinopithecus_bieti
ENSAPOG00000015946	pspc1	84	70.897	ENSRROG00000036334	PSPC1	82	81.173	Rhinopithecus_roxellana
ENSAPOG00000015946	pspc1	78	59.441	ENSSBOG00000028172	PSPC1	90	78.986	Saimiri_boliviensis_boliviensis
ENSAPOG00000015946	pspc1	84	66.594	ENSSHAG00000004696	PSPC1	91	65.112	Sarcophilus_harrisii
ENSAPOG00000015946	pspc1	88	74.840	ENSSFOG00015001395	pspc1	99	76.956	Scleropages_formosus
ENSAPOG00000015946	pspc1	100	83.895	ENSSMAG00000001761	pspc1	100	83.521	Scophthalmus_maximus
ENSAPOG00000015946	pspc1	100	85.370	ENSSDUG00000010651	pspc1	100	87.037	Seriola_dumerili
ENSAPOG00000015946	pspc1	100	76.864	ENSSLDG00000004284	pspc1	100	75.568	Seriola_lalandi_dorsalis
ENSAPOG00000015946	pspc1	77	73.006	ENSSARG00000000888	PSPC1	89	65.199	Sorex_araneus
ENSAPOG00000015946	pspc1	80	71.091	ENSSPUG00000008550	PSPC1	89	60.291	Sphenodon_punctatus
ENSAPOG00000015946	pspc1	87	51.860	ENSSPUG00000001136	-	67	49.049	Sphenodon_punctatus
ENSAPOG00000015946	pspc1	100	93.019	ENSSPAG00000001921	pspc1	100	93.019	Stegastes_partitus
ENSAPOG00000015946	pspc1	79	73.721	ENSSSCG00000009569	PSPC1	86	79.341	Sus_scrofa
ENSAPOG00000015946	pspc1	88	69.118	ENSTGUG00000011295	PSPC1	99	69.647	Taeniopygia_guttata
ENSAPOG00000015946	pspc1	100	75.143	ENSTRUG00000011335	pspc1	100	73.996	Takifugu_rubripes
ENSAPOG00000015946	pspc1	100	74.330	ENSTNIG00000010358	pspc1	100	74.330	Tetraodon_nigroviridis
ENSAPOG00000015946	pspc1	87	60.814	ENSTBEG00000002361	PSPC1	88	60.549	Tupaia_belangeri
ENSAPOG00000015946	pspc1	88	68.763	ENSTTRG00000003343	PSPC1	91	69.815	Tursiops_truncatus
ENSAPOG00000015946	pspc1	77	68.882	ENSUAMG00000012309	PSPC1	82	81.754	Ursus_americanus
ENSAPOG00000015946	pspc1	84	70.678	ENSUMAG00000013993	PSPC1	91	80.864	Ursus_maritimus
ENSAPOG00000015946	pspc1	67	73.641	ENSVPAG00000010029	PSPC1	100	70.361	Vicugna_pacos
ENSAPOG00000015946	pspc1	79	73.721	ENSVVUG00000006414	PSPC1	84	81.173	Vulpes_vulpes
ENSAPOG00000015946	pspc1	96	70.071	ENSXCOG00000017438	pspc1	93	81.633	Xiphophorus_couchianus
ENSAPOG00000015946	pspc1	96	70.309	ENSXMAG00000007929	pspc1	93	81.888	Xiphophorus_maculatus