EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSAPOG00000019448 (Gene tree)
Gene ID: 110953173
Gene Symbol: smg6
Alias: si:dkey-16f21.2
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Acanthochromis_polyacanthus
Status: putative
Strand: Minus strand
Length: 16873 bases
Position: chrMVNR01000281.1:23948-40820
Accession: 110953173
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAPOP00000016336	EST1	PF10374.9	4.9e-13	1	1
ENSAPOP00000016336	EST1_DNA_bind	PF10373.9	7.6e-58	1	1
ENSAPOP00000016336	PIN_4	PF13638.6	1.4e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAPOT00000025311	-	7355	XM_022197042	ENSAPOP00000016336	1647 (aa)	XP_022052734	UPI000B8FBD24

Gene Model

Click here to download ENSAPOG00000019448's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAPOG00000019448's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAPOG00000019448	smg6	74	54.914	ENSG00000070366	SMG6	100	58.135	Homo_sapiens
ENSAPOG00000019448	smg6	74	55.105	ENSAMEG00000007632	SMG6	83	54.902	Ailuropoda_melanoleuca
ENSAPOG00000019448	smg6	93	79.250	ENSACIG00000012997	smg6	100	78.798	Amphilophus_citrinellus
ENSAPOG00000019448	smg6	100	95.932	ENSAOCG00000002630	smg6	100	95.932	Amphiprion_ocellaris
ENSAPOG00000019448	smg6	100	95.811	ENSAPEG00000019101	smg6	100	95.811	Amphiprion_percula
ENSAPOG00000019448	smg6	100	78.593	ENSATEG00000006483	smg6	100	78.354	Anabas_testudineus
ENSAPOG00000019448	smg6	64	49.182	ENSACAG00000011783	SMG6	72	53.304	Anolis_carolinensis
ENSAPOG00000019448	smg6	74	55.019	ENSANAG00000035760	SMG6	83	55.129	Aotus_nancymaae
ENSAPOG00000019448	smg6	100	80.514	ENSACLG00000005288	smg6	100	80.658	Astatotilapia_calliptera
ENSAPOG00000019448	smg6	75	67.615	ENSAMXG00000017326	smg6	96	68.633	Astyanax_mexicanus
ENSAPOG00000019448	smg6	74	55.442	ENSBTAG00000000267	SMG6	87	54.608	Bos_taurus
ENSAPOG00000019448	smg6	74	55.148	ENSCJAG00000001820	SMG6	71	59.689	Callithrix_jacchus
ENSAPOG00000019448	smg6	74	55.451	ENSCAFG00000019260	SMG6	83	55.373	Canis_familiaris
ENSAPOG00000019448	smg6	74	55.451	ENSCAFG00020009770	SMG6	83	55.373	Canis_lupus_dingo
ENSAPOG00000019448	smg6	74	55.442	ENSCHIG00000021998	SMG6	83	55.265	Capra_hircus
ENSAPOG00000019448	smg6	74	54.553	ENSTSYG00000003406	SMG6	100	57.587	Carlito_syrichta
ENSAPOG00000019448	smg6	68	52.070	ENSCAPG00000016197	SMG6	81	49.318	Cavia_aperea
ENSAPOG00000019448	smg6	74	54.631	ENSCPOG00000014878	SMG6	92	56.769	Cavia_porcellus
ENSAPOG00000019448	smg6	74	54.836	ENSCCAG00000035801	SMG6	71	59.598	Cebus_capucinus
ENSAPOG00000019448	smg6	74	55.294	ENSCATG00000031956	SMG6	83	54.659	Cercocebus_atys
ENSAPOG00000019448	smg6	74	54.638	ENSCLAG00000006748	SMG6	91	56.332	Chinchilla_lanigera
ENSAPOG00000019448	smg6	74	55.070	ENSCSAG00000013800	SMG6	83	54.894	Chlorocebus_sabaeus
ENSAPOG00000019448	smg6	79	52.802	ENSCPBG00000020369	SMG6	71	58.646	Chrysemys_picta_bellii
ENSAPOG00000019448	smg6	74	54.758	ENSCANG00000031764	SMG6	100	58.501	Colobus_angolensis_palliatus
ENSAPOG00000019448	smg6	74	50.472	ENSCGRG00000007782	Smg6	72	54.212	Cricetulus_griseus_crigri
ENSAPOG00000019448	smg6	100	71.660	ENSCSEG00000012757	smg6	100	71.300	Cynoglossus_semilaevis
ENSAPOG00000019448	smg6	100	70.878	ENSCVAG00000012789	smg6	100	70.439	Cyprinodon_variegatus
ENSAPOG00000019448	smg6	100	57.898	ENSDARG00000100481	smg6	100	56.773	Danio_rerio
ENSAPOG00000019448	smg6	74	54.553	ENSDNOG00000048283	SMG6	83	54.346	Dasypus_novemcinctus
ENSAPOG00000019448	smg6	74	51.132	ENSDORG00000016614	Smg6	92	56.769	Dipodomys_ordii
ENSAPOG00000019448	smg6	67	90.000	ENSETEG00000016790	SMG6	59	90.000	Echinops_telfairi
ENSAPOG00000019448	smg6	60	47.600	ENSEBUG00000005059	smg6	63	46.798	Eptatretus_burgeri
ENSAPOG00000019448	smg6	74	55.564	ENSEASG00005009318	SMG6	83	54.874	Equus_asinus_asinus
ENSAPOG00000019448	smg6	74	55.564	ENSECAG00000006519	SMG6	83	54.874	Equus_caballus
ENSAPOG00000019448	smg6	74	47.170	ENSEEUG00000003493	SMG6	80	57.727	Erinaceus_europaeus
ENSAPOG00000019448	smg6	100	65.390	ENSELUG00000005934	smg6	99	67.323	Esox_lucius
ENSAPOG00000019448	smg6	78	53.564	ENSFCAG00000028817	SMG6	89	53.171	Felis_catus
ENSAPOG00000019448	smg6	79	53.585	ENSFALG00000006538	SMG6	90	52.972	Ficedula_albicollis
ENSAPOG00000019448	smg6	74	54.680	ENSFDAG00000015106	SMG6	91	55.895	Fukomys_damarensis
ENSAPOG00000019448	smg6	100	71.971	ENSFHEG00000013282	smg6	100	71.084	Fundulus_heteroclitus
ENSAPOG00000019448	smg6	78	53.997	ENSGALG00000003108	SMG6	85	52.880	Gallus_gallus
ENSAPOG00000019448	smg6	100	72.443	ENSGAFG00000000379	smg6	100	71.945	Gambusia_affinis
ENSAPOG00000019448	smg6	85	78.885	ENSGACG00000020521	smg6	100	77.679	Gasterosteus_aculeatus
ENSAPOG00000019448	smg6	84	50.310	ENSGAGG00000025617	SMG6	96	49.689	Gopherus_agassizii
ENSAPOG00000019448	smg6	74	54.992	ENSGGOG00000017156	SMG6	83	54.816	Gorilla_gorilla
ENSAPOG00000019448	smg6	100	80.753	ENSHBUG00000021311	smg6	100	79.916	Haplochromis_burtoni
ENSAPOG00000019448	smg6	74	54.595	ENSHGLG00000012882	SMG6	91	56.332	Heterocephalus_glaber_female
ENSAPOG00000019448	smg6	76	53.707	ENSHGLG00100017815	SMG6	91	56.332	Heterocephalus_glaber_male
ENSAPOG00000019448	smg6	65	72.104	ENSHCOG00000008761	smg6	83	72.201	Hippocampus_comes
ENSAPOG00000019448	smg6	100	54.831	ENSIPUG00000012493	smg6	100	54.443	Ictalurus_punctatus
ENSAPOG00000019448	smg6	74	54.980	ENSSTOG00000028127	SMG6	92	56.332	Ictidomys_tridecemlineatus
ENSAPOG00000019448	smg6	55	51.786	ENSJJAG00000015367	Smg6	61	56.336	Jaculus_jaculus
ENSAPOG00000019448	smg6	100	74.581	ENSKMAG00000000279	smg6	100	74.327	Kryptolebias_marmoratus
ENSAPOG00000019448	smg6	100	77.897	ENSLBEG00000002184	smg6	100	77.419	Labrus_bergylta
ENSAPOG00000019448	smg6	67	66.370	ENSLOCG00000006448	smg6	99	56.386	Lepisosteus_oculatus
ENSAPOG00000019448	smg6	74	55.070	ENSMFAG00000003394	SMG6	83	54.894	Macaca_fascicularis
ENSAPOG00000019448	smg6	74	54.992	ENSMMUG00000023161	SMG6	83	54.816	Macaca_mulatta
ENSAPOG00000019448	smg6	74	52.697	ENSMNEG00000044592	SMG6	73	56.592	Macaca_nemestrina
ENSAPOG00000019448	smg6	70	60.035	ENSMLEG00000029353	SMG6	84	59.683	Mandrillus_leucophaeus
ENSAPOG00000019448	smg6	100	80.346	ENSMAMG00000020119	smg6	100	81.198	Mastacembelus_armatus
ENSAPOG00000019448	smg6	100	80.383	ENSMZEG00005024736	smg6	100	79.725	Maylandia_zebra
ENSAPOG00000019448	smg6	54	52.043	ENSMGAG00000005401	-	82	51.180	Meleagris_gallopavo
ENSAPOG00000019448	smg6	74	55.035	ENSMICG00000012913	SMG6	83	55.194	Microcebus_murinus
ENSAPOG00000019448	smg6	100	72.683	ENSMMOG00000010883	smg6	100	72.865	Mola_mola
ENSAPOG00000019448	smg6	74	56.235	ENSMODG00000010622	SMG6	83	55.153	Monodelphis_domestica
ENSAPOG00000019448	smg6	100	79.545	ENSMALG00000001106	smg6	100	79.187	Monopterus_albus
ENSAPOG00000019448	smg6	74	54.219	MGP_CAROLIEiJ_G0016729	Smg6	95	67.155	Mus_caroli
ENSAPOG00000019448	smg6	74	54.859	ENSMUSG00000038290	Smg6	94	67.742	Mus_musculus
ENSAPOG00000019448	smg6	74	53.906	MGP_PahariEiJ_G0017866	Smg6	95	67.449	Mus_pahari
ENSAPOG00000019448	smg6	74	54.781	MGP_SPRETEiJ_G0017572	Smg6	95	67.449	Mus_spretus
ENSAPOG00000019448	smg6	78	53.422	ENSMPUG00000013046	SMG6	89	53.097	Mustela_putorius_furo
ENSAPOG00000019448	smg6	74	55.582	ENSMLUG00000005739	SMG6	83	55.433	Myotis_lucifugus
ENSAPOG00000019448	smg6	74	54.439	ENSNGAG00000007287	Smg6	92	56.332	Nannospalax_galili
ENSAPOG00000019448	smg6	98	77.074	ENSNBRG00000009511	smg6	99	79.034	Neolamprologus_brichardi
ENSAPOG00000019448	smg6	74	54.926	ENSNLEG00000017171	SMG6	100	58.135	Nomascus_leucogenys
ENSAPOG00000019448	smg6	79	52.570	ENSMEUG00000015804	SMG6	89	51.917	Notamacropus_eugenii
ENSAPOG00000019448	smg6	51	63.158	ENSOPRG00000000579	SMG6	82	61.979	Ochotona_princeps
ENSAPOG00000019448	smg6	74	49.020	ENSODEG00000008038	SMG6	81	54.651	Octodon_degus
ENSAPOG00000019448	smg6	100	80.693	ENSONIG00000005594	smg6	100	83.050	Oreochromis_niloticus
ENSAPOG00000019448	smg6	74	55.251	ENSOCUG00000013018	SMG6	83	55.051	Oryctolagus_cuniculus
ENSAPOG00000019448	smg6	100	70.490	ENSORLG00000003317	smg6	100	70.311	Oryzias_latipes
ENSAPOG00000019448	smg6	100	70.567	ENSORLG00020015343	smg6	100	70.472	Oryzias_latipes_hni
ENSAPOG00000019448	smg6	100	71.002	ENSORLG00015020454	smg6	100	70.848	Oryzias_latipes_hsok
ENSAPOG00000019448	smg6	100	69.484	ENSOMEG00000010838	smg6	100	70.024	Oryzias_melastigma
ENSAPOG00000019448	smg6	74	54.992	ENSOGAG00000004483	SMG6	74	58.829	Otolemur_garnettii
ENSAPOG00000019448	smg6	74	55.521	ENSOARG00000015076	SMG6	85	55.344	Ovis_aries
ENSAPOG00000019448	smg6	74	54.836	ENSPPAG00000043296	SMG6	83	54.659	Pan_paniscus
ENSAPOG00000019448	smg6	74	55.469	ENSPPRG00000014581	SMG6	89	53.245	Panthera_pardus
ENSAPOG00000019448	smg6	74	55.469	ENSPTIG00000008925	SMG6	100	58.318	Panthera_tigris_altaica
ENSAPOG00000019448	smg6	74	55.070	ENSPTRG00000008544	SMG6	100	58.135	Pan_troglodytes
ENSAPOG00000019448	smg6	74	55.338	ENSPANG00000024588	SMG6	83	54.894	Papio_anubis
ENSAPOG00000019448	smg6	71	51.069	ENSPSIG00000006660	SMG6	86	51.367	Pelodiscus_sinensis
ENSAPOG00000019448	smg6	95	81.335	ENSPMGG00000000844	smg6	100	68.620	Periophthalmus_magnuspinnatus
ENSAPOG00000019448	smg6	74	54.617	ENSPEMG00000020707	Smg6	93	55.895	Peromyscus_maniculatus_bairdii
ENSAPOG00000019448	smg6	99	74.851	ENSPFOG00000012035	smg6	100	74.104	Poecilia_formosa
ENSAPOG00000019448	smg6	100	73.418	ENSPLAG00000017660	smg6	100	72.678	Poecilia_latipinna
ENSAPOG00000019448	smg6	100	73.357	ENSPMEG00000000258	smg6	100	72.678	Poecilia_mexicana
ENSAPOG00000019448	smg6	100	72.771	ENSPREG00000010066	smg6	100	72.031	Poecilia_reticulata
ENSAPOG00000019448	smg6	74	51.328	ENSPPYG00000007790	SMG6	83	51.014	Pongo_abelii
ENSAPOG00000019448	smg6	71	60.000	ENSPCAG00000000552	SMG6	67	59.865	Procavia_capensis
ENSAPOG00000019448	smg6	74	54.758	ENSPCOG00000020925	SMG6	83	54.913	Propithecus_coquereli
ENSAPOG00000019448	smg6	70	63.077	ENSPVAG00000002159	SMG6	72	55.393	Pteropus_vampyrus
ENSAPOG00000019448	smg6	93	77.363	ENSPNYG00000024151	smg6	99	78.836	Pundamilia_nyererei
ENSAPOG00000019448	smg6	100	53.090	ENSPNAG00000015480	smg6	100	52.834	Pygocentrus_nattereri
ENSAPOG00000019448	smg6	74	54.788	ENSRNOG00000003041	Smg6	94	68.035	Rattus_norvegicus
ENSAPOG00000019448	smg6	74	55.070	ENSRBIG00000024746	SMG6	83	54.894	Rhinopithecus_bieti
ENSAPOG00000019448	smg6	74	55.070	ENSRROG00000030423	SMG6	100	58.501	Rhinopithecus_roxellana
ENSAPOG00000019448	smg6	74	54.510	ENSSBOG00000022518	SMG6	71	57.678	Saimiri_boliviensis_boliviensis
ENSAPOG00000019448	smg6	76	55.133	ENSSHAG00000010045	SMG6	86	54.608	Sarcophilus_harrisii
ENSAPOG00000019448	smg6	100	51.752	ENSSFOG00015005436	smg6	92	56.010	Scleropages_formosus
ENSAPOG00000019448	smg6	100	77.791	ENSSMAG00000019777	smg6	100	77.585	Scophthalmus_maximus
ENSAPOG00000019448	smg6	100	83.513	ENSSDUG00000016412	smg6	100	83.154	Seriola_dumerili
ENSAPOG00000019448	smg6	91	83.826	ENSSLDG00000020747	smg6	98	83.377	Seriola_lalandi_dorsalis
ENSAPOG00000019448	smg6	79	53.132	ENSSPUG00000007152	SMG6	89	52.303	Sphenodon_punctatus
ENSAPOG00000019448	smg6	100	91.692	ENSSPAG00000015633	smg6	100	91.631	Stegastes_partitus
ENSAPOG00000019448	smg6	74	55.730	ENSSSCG00000017826	SMG6	83	55.224	Sus_scrofa
ENSAPOG00000019448	smg6	78	53.985	ENSTGUG00000005836	SMG6	88	53.566	Taeniopygia_guttata
ENSAPOG00000019448	smg6	94	81.250	ENSTRUG00000000358	smg6	99	81.250	Takifugu_rubripes
ENSAPOG00000019448	smg6	93	78.571	ENSTNIG00000016164	smg6	100	79.106	Tetraodon_nigroviridis
ENSAPOG00000019448	smg6	74	52.978	ENSTBEG00000011424	SMG6	72	56.422	Tupaia_belangeri
ENSAPOG00000019448	smg6	66	57.143	ENSTTRG00000001175	SMG6	74	56.429	Tursiops_truncatus
ENSAPOG00000019448	smg6	74	55.417	ENSUAMG00000025152	SMG6	85	55.276	Ursus_americanus
ENSAPOG00000019448	smg6	74	55.312	ENSUMAG00000009306	SMG6	85	55.292	Ursus_maritimus
ENSAPOG00000019448	smg6	60	95.833	ENSVPAG00000000225	SMG6	70	95.833	Vicugna_pacos
ENSAPOG00000019448	smg6	74	55.949	ENSVVUG00000021727	SMG6	83	55.294	Vulpes_vulpes
ENSAPOG00000019448	smg6	66	54.783	ENSXETG00000023799	SMG6	88	49.657	Xenopus_tropicalis
ENSAPOG00000019448	smg6	98	71.077	ENSXCOG00000009867	smg6	99	70.074	Xiphophorus_couchianus
ENSAPOG00000019448	smg6	100	72.936	ENSXMAG00000010321	smg6	100	72.135	Xiphophorus_maculatus