EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSAPOG00000019621 (Gene tree)
Gene ID: 110966720
Gene Symbol: cpsf1
Alias: wu:fb24c01
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Acanthochromis_polyacanthus
Status: putative
Strand: Plus strand
Length: 17353 bases
Position: chrMVNR01001665.1:4552-21904
Accession: 110966720
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAPOP00000016344	CPSF_A	PF03178.15	8.5e-93	1	1
ENSAPOP00000031906	CPSF_A	PF03178.15	1.4e-92	1	1
ENSAPOP00000031918	CPSF_A	PF03178.15	2.1e-91	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAPOT00000025342	-	5111	XM_022216165	ENSAPOP00000031906	1472 (aa)	XP_022071857	UPI000B905694
ENSAPOT00000033622	-	5202	-	ENSAPOP00000031918	1429 (aa)	-	-
ENSAPOT00000025322	-	4257	-	ENSAPOP00000016344	1418 (aa)	-	-

Gene Model

Click here to download ENSAPOG00000019621's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAPOG00000019621's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAPOG00000019621	cpsf1	100	77.973	ENSG00000071894	CPSF1	100	80.556	Homo_sapiens
ENSAPOG00000019621	cpsf1	99	76.811	ENSAMEG00000005557	CPSF1	99	76.532	Ailuropoda_melanoleuca
ENSAPOG00000019621	cpsf1	100	89.573	ENSACIG00000006112	cpsf1	100	89.844	Amphilophus_citrinellus
ENSAPOG00000019621	cpsf1	100	94.193	ENSAOCG00000007120	cpsf1	100	94.193	Amphiprion_ocellaris
ENSAPOG00000019621	cpsf1	100	95.544	ENSAPEG00000005755	cpsf1	100	95.544	Amphiprion_percula
ENSAPOG00000019621	cpsf1	100	94.369	ENSATEG00000011097	cpsf1	100	94.912	Anabas_testudineus
ENSAPOG00000019621	cpsf1	93	73.948	ENSACAG00000009655	CPSF1	100	73.657	Anolis_carolinensis
ENSAPOG00000019621	cpsf1	100	78.041	ENSANAG00000036514	CPSF1	100	78.176	Aotus_nancymaae
ENSAPOG00000019621	cpsf1	99	94.722	ENSACLG00000012231	cpsf1	99	94.072	Astatotilapia_calliptera
ENSAPOG00000019621	cpsf1	100	79.203	ENSAMXG00000008485	cpsf1	100	78.798	Astyanax_mexicanus
ENSAPOG00000019621	cpsf1	100	76.841	ENSBTAG00000008355	CPSF1	100	77.419	Bos_taurus
ENSAPOG00000019621	cpsf1	100	32.450	WBGene00022301	cpsf-1	99	41.243	Caenorhabditis_elegans
ENSAPOG00000019621	cpsf1	100	78.243	ENSCJAG00000021421	CPSF1	100	78.041	Callithrix_jacchus
ENSAPOG00000019621	cpsf1	99	78.328	ENSCAFG00000001600	CPSF1	100	77.817	Canis_familiaris
ENSAPOG00000019621	cpsf1	100	78.003	ENSCAFG00020020821	CPSF1	100	77.935	Canis_lupus_dingo
ENSAPOG00000019621	cpsf1	100	74.257	ENSCHIG00000015833	CPSF1	100	73.851	Capra_hircus
ENSAPOG00000019621	cpsf1	100	78.514	ENSTSYG00000028560	CPSF1	100	81.481	Carlito_syrichta
ENSAPOG00000019621	cpsf1	99	77.608	ENSCAPG00000014921	CPSF1	99	77.469	Cavia_aperea
ENSAPOG00000019621	cpsf1	100	77.027	ENSCPOG00000011448	CPSF1	100	76.892	Cavia_porcellus
ENSAPOG00000019621	cpsf1	100	78.393	ENSCCAG00000037658	CPSF1	100	80.734	Cebus_capucinus
ENSAPOG00000019621	cpsf1	100	77.973	ENSCATG00000037234	CPSF1	100	80.556	Cercocebus_atys
ENSAPOG00000019621	cpsf1	100	78.229	ENSCLAG00000012166	CPSF1	100	78.093	Chinchilla_lanigera
ENSAPOG00000019621	cpsf1	100	78.243	ENSCSAG00000008502	CPSF1	100	78.041	Chlorocebus_sabaeus
ENSAPOG00000019621	cpsf1	99	79.901	ENSCPBG00000018910	CPSF1	97	79.375	Chrysemys_picta_bellii
ENSAPOG00000019621	cpsf1	96	47.893	ENSCING00000000514	-	100	48.770	Ciona_intestinalis
ENSAPOG00000019621	cpsf1	99	48.113	ENSCSAVG00000002293	-	99	51.163	Ciona_savignyi
ENSAPOG00000019621	cpsf1	99	75.730	ENSCANG00000032760	CPSF1	100	81.019	Colobus_angolensis_palliatus
ENSAPOG00000019621	cpsf1	100	77.890	ENSCGRG00001016344	Cpsf1	100	77.688	Cricetulus_griseus_chok1gshd
ENSAPOG00000019621	cpsf1	100	76.335	ENSCGRG00000003118	Cpsf1	100	77.527	Cricetulus_griseus_crigri
ENSAPOG00000019621	cpsf1	100	86.730	ENSCSEG00000013464	cpsf1	99	89.059	Cynoglossus_semilaevis
ENSAPOG00000019621	cpsf1	88	87.403	ENSCVAG00000014059	cpsf1	100	81.944	Cyprinodon_variegatus
ENSAPOG00000019621	cpsf1	100	86.959	ENSDARG00000034178	cpsf1	100	87.095	Danio_rerio
ENSAPOG00000019621	cpsf1	57	82.659	ENSDNOG00000043654	CPSF1	94	82.370	Dasypus_novemcinctus
ENSAPOG00000019621	cpsf1	99	77.933	ENSDORG00000006278	Cpsf1	99	78.097	Dipodomys_ordii
ENSAPOG00000019621	cpsf1	100	44.158	FBgn0024698	Cpsf160	100	43.902	Drosophila_melanogaster
ENSAPOG00000019621	cpsf1	81	85.906	ENSETEG00000006022	CPSF1	83	85.906	Echinops_telfairi
ENSAPOG00000019621	cpsf1	100	77.935	ENSEASG00005010774	CPSF1	100	78.138	Equus_asinus_asinus
ENSAPOG00000019621	cpsf1	100	77.800	ENSECAG00000022209	CPSF1	100	78.003	Equus_caballus
ENSAPOG00000019621	cpsf1	99	78.818	ENSEEUG00000000471	CPSF1	100	77.680	Erinaceus_europaeus
ENSAPOG00000019621	cpsf1	100	86.492	ENSELUG00000012271	cpsf1	100	86.223	Esox_lucius
ENSAPOG00000019621	cpsf1	100	78.431	ENSFDAG00000016060	CPSF1	100	78.296	Fukomys_damarensis
ENSAPOG00000019621	cpsf1	100	87.584	ENSFHEG00000016801	cpsf1	100	87.382	Fundulus_heteroclitus
ENSAPOG00000019621	cpsf1	100	86.158	ENSGMOG00000000796	cpsf1	100	86.293	Gadus_morhua
ENSAPOG00000019621	cpsf1	96	91.071	ENSGAFG00000018890	cpsf1	100	91.071	Gambusia_affinis
ENSAPOG00000019621	cpsf1	100	90.142	ENSGACG00000008703	cpsf1	100	89.700	Gasterosteus_aculeatus
ENSAPOG00000019621	cpsf1	100	76.939	ENSGAGG00000004276	CPSF1	98	80.212	Gopherus_agassizii
ENSAPOG00000019621	cpsf1	100	77.958	ENSGGOG00000016185	CPSF1	100	80.556	Gorilla_gorilla
ENSAPOG00000019621	cpsf1	100	92.052	ENSHBUG00000018900	cpsf1	100	91.644	Haplochromis_burtoni
ENSAPOG00000019621	cpsf1	100	78.296	ENSHGLG00000016139	CPSF1	100	78.161	Heterocephalus_glaber_female
ENSAPOG00000019621	cpsf1	100	78.229	ENSHGLG00100009750	CPSF1	100	78.093	Heterocephalus_glaber_male
ENSAPOG00000019621	cpsf1	100	89.402	ENSHCOG00000018509	cpsf1	100	89.198	Hippocampus_comes
ENSAPOG00000019621	cpsf1	100	83.277	ENSIPUG00000011259	cpsf1	100	82.873	Ictalurus_punctatus
ENSAPOG00000019621	cpsf1	100	77.932	ENSSTOG00000009957	CPSF1	99	77.816	Ictidomys_tridecemlineatus
ENSAPOG00000019621	cpsf1	100	78.026	ENSJJAG00000023002	Cpsf1	100	77.823	Jaculus_jaculus
ENSAPOG00000019621	cpsf1	91	94.357	ENSKMAG00000001940	cpsf1	99	94.357	Kryptolebias_marmoratus
ENSAPOG00000019621	cpsf1	100	92.120	ENSLBEG00000003601	cpsf1	100	92.459	Labrus_bergylta
ENSAPOG00000019621	cpsf1	87	79.306	ENSLACG00000000233	CPSF1	92	79.187	Latimeria_chalumnae
ENSAPOG00000019621	cpsf1	100	81.591	ENSLOCG00000008484	cpsf1	100	81.524	Lepisosteus_oculatus
ENSAPOG00000019621	cpsf1	99	78.328	ENSLAFG00000022601	CPSF1	100	78.188	Loxodonta_africana
ENSAPOG00000019621	cpsf1	100	77.905	ENSMFAG00000037013	CPSF1	100	80.556	Macaca_fascicularis
ENSAPOG00000019621	cpsf1	100	77.905	ENSMMUG00000007380	CPSF1	100	80.556	Macaca_mulatta
ENSAPOG00000019621	cpsf1	99	78.282	ENSMNEG00000043564	CPSF1	100	80.556	Macaca_nemestrina
ENSAPOG00000019621	cpsf1	100	77.905	ENSMLEG00000043010	CPSF1	100	80.556	Mandrillus_leucophaeus
ENSAPOG00000019621	cpsf1	100	95.177	ENSMAMG00000003803	cpsf1	100	95.177	Mastacembelus_armatus
ENSAPOG00000019621	cpsf1	100	88.587	ENSMZEG00005001168	cpsf1	100	88.179	Maylandia_zebra
ENSAPOG00000019621	cpsf1	100	77.958	ENSMAUG00000003601	Cpsf1	100	77.755	Mesocricetus_auratus
ENSAPOG00000019621	cpsf1	100	78.161	ENSMICG00000015767	CPSF1	100	77.890	Microcebus_murinus
ENSAPOG00000019621	cpsf1	100	77.688	ENSMOCG00000022758	Cpsf1	100	77.485	Microtus_ochrogaster
ENSAPOG00000019621	cpsf1	100	90.669	ENSMMOG00000021245	cpsf1	100	90.467	Mola_mola
ENSAPOG00000019621	cpsf1	100	78.205	ENSMODG00000010755	CPSF1	100	78.340	Monodelphis_domestica
ENSAPOG00000019621	cpsf1	100	93.886	ENSMALG00000020545	cpsf1	100	93.954	Monopterus_albus
ENSAPOG00000019621	cpsf1	100	78.161	MGP_CAROLIEiJ_G0019936	Cpsf1	100	77.958	Mus_caroli
ENSAPOG00000019621	cpsf1	100	78.229	ENSMUSG00000034022	Cpsf1	100	78.026	Mus_musculus
ENSAPOG00000019621	cpsf1	100	78.161	MGP_PahariEiJ_G0019946	Cpsf1	100	78.026	Mus_pahari
ENSAPOG00000019621	cpsf1	100	78.229	MGP_SPRETEiJ_G0020839	Cpsf1	100	78.026	Mus_spretus
ENSAPOG00000019621	cpsf1	97	78.371	ENSMPUG00000006419	CPSF1	94	77.966	Mustela_putorius_furo
ENSAPOG00000019621	cpsf1	100	78.041	ENSNGAG00000022460	Cpsf1	100	77.838	Nannospalax_galili
ENSAPOG00000019621	cpsf1	100	85.617	ENSNBRG00000000813	cpsf1	100	85.346	Neolamprologus_brichardi
ENSAPOG00000019621	cpsf1	79	87.261	ENSNLEG00000010633	-	94	87.261	Nomascus_leucogenys
ENSAPOG00000019621	cpsf1	85	87.791	ENSMEUG00000014922	CPSF1	85	87.791	Notamacropus_eugenii
ENSAPOG00000019621	cpsf1	63	89.474	ENSOPRG00000004693	-	70	89.474	Ochotona_princeps
ENSAPOG00000019621	cpsf1	100	78.296	ENSODEG00000013995	CPSF1	100	78.161	Octodon_degus
ENSAPOG00000019621	cpsf1	100	92.224	ENSONIG00000007676	cpsf1	100	91.751	Oreochromis_niloticus
ENSAPOG00000019621	cpsf1	61	78.571	ENSOANG00000010716	CPSF1	89	78.571	Ornithorhynchus_anatinus
ENSAPOG00000019621	cpsf1	100	90.829	ENSORLG00000013544	cpsf1	100	90.693	Oryzias_latipes
ENSAPOG00000019621	cpsf1	100	90.829	ENSORLG00020021693	cpsf1	100	90.693	Oryzias_latipes_hni
ENSAPOG00000019621	cpsf1	100	90.829	ENSORLG00015009979	cpsf1	100	90.693	Oryzias_latipes_hsok
ENSAPOG00000019621	cpsf1	100	90.428	ENSOMEG00000011849	cpsf1	100	90.020	Oryzias_melastigma
ENSAPOG00000019621	cpsf1	100	78.378	ENSOGAG00000000315	CPSF1	100	78.108	Otolemur_garnettii
ENSAPOG00000019621	cpsf1	100	77.973	ENSPPAG00000019280	CPSF1	100	81.900	Pan_paniscus
ENSAPOG00000019621	cpsf1	100	76.678	ENSPTRG00000051253	-	100	81.900	Pan_troglodytes
ENSAPOG00000019621	cpsf1	100	77.973	ENSPTRG00000049288	-	100	81.900	Pan_troglodytes
ENSAPOG00000019621	cpsf1	99	78.282	ENSPANG00000015005	CPSF1	100	80.556	Papio_anubis
ENSAPOG00000019621	cpsf1	100	86.081	ENSPKIG00000002582	cpsf1	100	86.100	Paramormyrops_kingsleyae
ENSAPOG00000019621	cpsf1	100	78.340	ENSPCIG00000009035	CPSF1	100	78.475	Phascolarctos_cinereus
ENSAPOG00000019621	cpsf1	100	90.761	ENSPFOG00000012870	cpsf1	100	90.965	Poecilia_formosa
ENSAPOG00000019621	cpsf1	100	91.168	ENSPREG00000016307	cpsf1	100	91.236	Poecilia_reticulata
ENSAPOG00000019621	cpsf1	100	71.101	ENSPPYG00000018973	CPSF1	100	71.033	Pongo_abelii
ENSAPOG00000019621	cpsf1	94	85.511	ENSPCAG00000011541	CPSF1	94	85.511	Procavia_capensis
ENSAPOG00000019621	cpsf1	100	74.865	ENSPCOG00000020001	CPSF1	100	80.556	Propithecus_coquereli
ENSAPOG00000019621	cpsf1	91	88.571	ENSPVAG00000006761	CPSF1	91	88.571	Pteropus_vampyrus
ENSAPOG00000019621	cpsf1	100	94.840	ENSPNYG00000004906	cpsf1	100	94.229	Pundamilia_nyererei
ENSAPOG00000019621	cpsf1	100	81.695	ENSPNAG00000024395	cpsf1	100	81.424	Pygocentrus_nattereri
ENSAPOG00000019621	cpsf1	100	78.064	ENSRNOG00000030705	Cpsf1	100	77.861	Rattus_norvegicus
ENSAPOG00000019621	cpsf1	100	78.041	ENSRBIG00000044907	CPSF1	100	81.019	Rhinopithecus_bieti
ENSAPOG00000019621	cpsf1	100	78.108	ENSRROG00000044861	CPSF1	100	81.019	Rhinopithecus_roxellana
ENSAPOG00000019621	cpsf1	99	78.492	ENSSBOG00000027177	CPSF1	99	78.392	Saimiri_boliviensis_boliviensis
ENSAPOG00000019621	cpsf1	100	78.273	ENSSHAG00000006500	CPSF1	100	78.408	Sarcophilus_harrisii
ENSAPOG00000019621	cpsf1	98	86.947	ENSSFOG00015004606	cpsf1	100	86.344	Scleropages_formosus
ENSAPOG00000019621	cpsf1	100	93.890	ENSSMAG00000020547	cpsf1	100	93.754	Scophthalmus_maximus
ENSAPOG00000019621	cpsf1	100	91.921	ENSSDUG00000001100	cpsf1	100	91.989	Seriola_dumerili
ENSAPOG00000019621	cpsf1	100	91.989	ENSSLDG00000003619	cpsf1	100	91.853	Seriola_lalandi_dorsalis
ENSAPOG00000019621	cpsf1	89	74.745	ENSSARG00000003643	CPSF1	92	74.516	Sorex_araneus
ENSAPOG00000019621	cpsf1	99	80.729	ENSSPUG00000014396	CPSF1	99	80.661	Sphenodon_punctatus
ENSAPOG00000019621	cpsf1	100	97.418	ENSSPAG00000005349	cpsf1	100	97.418	Stegastes_partitus
ENSAPOG00000019621	cpsf1	100	77.058	ENSSSCG00000005906	CPSF1	100	77.193	Sus_scrofa
ENSAPOG00000019621	cpsf1	99	91.056	ENSTRUG00000013134	cpsf1	99	91.056	Takifugu_rubripes
ENSAPOG00000019621	cpsf1	100	89.031	ENSTNIG00000014027	cpsf1	100	88.964	Tetraodon_nigroviridis
ENSAPOG00000019621	cpsf1	77	74.603	ENSTBEG00000001756	CPSF1	90	74.250	Tupaia_belangeri
ENSAPOG00000019621	cpsf1	90	84.310	ENSTTRG00000001937	CPSF1	90	84.310	Tursiops_truncatus
ENSAPOG00000019621	cpsf1	99	78.328	ENSUAMG00000006476	CPSF1	98	78.049	Ursus_americanus
ENSAPOG00000019621	cpsf1	100	88.315	ENSXCOG00000003608	cpsf1	100	88.043	Xiphophorus_couchianus
ENSAPOG00000019621	cpsf1	100	87.441	ENSXMAG00000005798	cpsf1	100	87.508	Xiphophorus_maculatus