EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSAPOG00000019690 (Gene tree)
Gene ID: 110954872
Gene Symbol: smg5
Alias: zgc:113841
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Acanthochromis_polyacanthus
Status: putative
Strand: Plus strand
Length: 22337 bases
Position: chrMVNR01000375.1:445627-467963
Accession: 110954872
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAPOP00000031981	EST1	PF10374.9	2.6e-24	1	1
ENSAPOP00000016487	EST1	PF10374.9	3.5e-24	1	1
ENSAPOP00000016487	EST1_DNA_bind	PF10373.9	2.1e-40	1	1
ENSAPOP00000031981	EST1_DNA_bind	PF10373.9	3.3e-39	1	1
ENSAPOP00000031981	PIN_4	PF13638.6	5.1e-07	1	1
ENSAPOP00000016487	PIN_4	PF13638.6	5.2e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAPOT00000025478	-	4939	XM_022199620	ENSAPOP00000031981	1127 (aa)	XP_022055312	UPI000B8F206C
ENSAPOT00000025487	-	2955	-	ENSAPOP00000016487	984 (aa)	-	-

Gene Model

Click here to download ENSAPOG00000019690's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAPOG00000019690's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAPOG00000019690	smg5	99	66.896	ENSG00000198952	SMG5	99	67.647	Homo_sapiens
ENSAPOG00000019690	smg5	98	65.300	ENSAMEG00000014458	SMG5	100	66.232	Ailuropoda_melanoleuca
ENSAPOG00000019690	smg5	99	87.670	ENSACIG00000001353	smg5	99	87.961	Amphilophus_citrinellus
ENSAPOG00000019690	smg5	100	98.403	ENSAOCG00000019483	smg5	100	98.403	Amphiprion_ocellaris
ENSAPOG00000019690	smg5	100	98.403	ENSAPEG00000022949	smg5	100	98.403	Amphiprion_percula
ENSAPOG00000019690	smg5	100	92.389	ENSATEG00000005348	smg5	100	91.940	Anabas_testudineus
ENSAPOG00000019690	smg5	98	65.920	ENSAPLG00000010263	SMG5	100	65.887	Anas_platyrhynchos
ENSAPOG00000019690	smg5	93	77.103	ENSANAG00000032899	SMG5	99	67.317	Aotus_nancymaae
ENSAPOG00000019690	smg5	100	91.343	ENSACLG00000009311	smg5	100	91.424	Astatotilapia_calliptera
ENSAPOG00000019690	smg5	100	78.989	ENSAMXG00000024616	smg5	100	78.742	Astyanax_mexicanus
ENSAPOG00000019690	smg5	99	40.237	ENSBTAG00000021747	-	92	49.161	Bos_taurus
ENSAPOG00000019690	smg5	99	67.224	ENSBTAG00000009435	SMG5	99	67.385	Bos_taurus
ENSAPOG00000019690	smg5	93	77.103	ENSCJAG00000005684	SMG5	99	67.317	Callithrix_jacchus
ENSAPOG00000019690	smg5	93	77.176	ENSCAFG00000016839	SMG5	99	67.426	Canis_familiaris
ENSAPOG00000019690	smg5	93	77.176	ENSCAFG00020006061	SMG5	99	67.426	Canis_lupus_dingo
ENSAPOG00000019690	smg5	93	77.494	ENSCHIG00000007709	SMG5	99	67.913	Capra_hircus
ENSAPOG00000019690	smg5	99	39.900	ENSCHIG00000006323	-	93	49.389	Capra_hircus
ENSAPOG00000019690	smg5	99	67.353	ENSTSYG00000004099	SMG5	99	67.808	Carlito_syrichta
ENSAPOG00000019690	smg5	95	52.083	ENSCAPG00000003631	SMG5	100	53.033	Cavia_aperea
ENSAPOG00000019690	smg5	99	66.699	ENSCPOG00000015696	SMG5	99	67.485	Cavia_porcellus
ENSAPOG00000019690	smg5	93	77.103	ENSCCAG00000027409	SMG5	99	67.317	Cebus_capucinus
ENSAPOG00000019690	smg5	99	66.896	ENSCATG00000030539	SMG5	99	67.647	Cercocebus_atys
ENSAPOG00000019690	smg5	99	66.146	ENSCLAG00000003983	SMG5	99	67.289	Chinchilla_lanigera
ENSAPOG00000019690	smg5	99	66.896	ENSCSAG00000002120	SMG5	99	67.647	Chlorocebus_sabaeus
ENSAPOG00000019690	smg5	55	75.812	ENSCHOG00000008741	-	57	75.812	Choloepus_hoffmanni
ENSAPOG00000019690	smg5	93	65.314	ENSCPBG00000025848	SMG5	100	65.279	Chrysemys_picta_bellii
ENSAPOG00000019690	smg5	93	33.683	ENSCING00000008706	-	98	32.444	Ciona_intestinalis
ENSAPOG00000019690	smg5	93	76.905	ENSCANG00000029208	SMG5	99	64.706	Colobus_angolensis_palliatus
ENSAPOG00000019690	smg5	99	67.554	ENSCGRG00001006336	Smg5	99	67.353	Cricetulus_griseus_chok1gshd
ENSAPOG00000019690	smg5	98	67.470	ENSCGRG00000005111	Smg5	100	67.233	Cricetulus_griseus_crigri
ENSAPOG00000019690	smg5	100	87.068	ENSCSEG00000014220	smg5	100	86.625	Cynoglossus_semilaevis
ENSAPOG00000019690	smg5	100	80.674	ENSCVAG00000000529	smg5	100	80.674	Cyprinodon_variegatus
ENSAPOG00000019690	smg5	100	77.748	ENSDARG00000041481	smg5	100	77.397	Danio_rerio
ENSAPOG00000019690	smg5	99	63.851	ENSDNOG00000000051	SMG5	99	64.631	Dasypus_novemcinctus
ENSAPOG00000019690	smg5	92	33.406	ENSDNOG00000039862	-	99	32.293	Dasypus_novemcinctus
ENSAPOG00000019690	smg5	99	67.220	ENSDORG00000010382	Smg5	99	66.926	Dipodomys_ordii
ENSAPOG00000019690	smg5	75	85.437	ENSETEG00000010336	SMG5	81	85.437	Echinops_telfairi
ENSAPOG00000019690	smg5	91	45.650	ENSEBUG00000003739	smg5	99	44.941	Eptatretus_burgeri
ENSAPOG00000019690	smg5	99	66.896	ENSEASG00005019122	SMG5	99	66.962	Equus_asinus_asinus
ENSAPOG00000019690	smg5	99	66.667	ENSECAG00000001389	SMG5	99	66.962	Equus_caballus
ENSAPOG00000019690	smg5	73	79.827	ENSEEUG00000012690	SMG5	75	79.827	Erinaceus_europaeus
ENSAPOG00000019690	smg5	100	82.643	ENSELUG00000012585	smg5	100	81.521	Esox_lucius
ENSAPOG00000019690	smg5	99	65.907	ENSFCAG00000011783	SMG5	99	66.435	Felis_catus
ENSAPOG00000019690	smg5	57	69.125	ENSFALG00000001166	-	96	68.729	Ficedula_albicollis
ENSAPOG00000019690	smg5	97	66.499	ENSFDAG00000017388	SMG5	100	66.868	Fukomys_damarensis
ENSAPOG00000019690	smg5	98	78.269	ENSFHEG00000013939	smg5	94	91.746	Fundulus_heteroclitus
ENSAPOG00000019690	smg5	100	79.738	ENSGMOG00000007310	smg5	100	79.476	Gadus_morhua
ENSAPOG00000019690	smg5	99	66.218	ENSGALG00000029918	-	99	66.571	Gallus_gallus
ENSAPOG00000019690	smg5	93	90.735	ENSGAFG00000021691	smg5	99	91.883	Gambusia_affinis
ENSAPOG00000019690	smg5	100	88.526	ENSGACG00000013142	smg5	100	87.114	Gasterosteus_aculeatus
ENSAPOG00000019690	smg5	99	66.095	ENSGAGG00000016131	SMG5	99	65.870	Gopherus_agassizii
ENSAPOG00000019690	smg5	92	77.103	ENSGGOG00000010932	SMG5	99	67.451	Gorilla_gorilla
ENSAPOG00000019690	smg5	100	91.424	ENSHBUG00000008654	smg5	100	91.770	Haplochromis_burtoni
ENSAPOG00000019690	smg5	99	66.536	ENSHGLG00000019152	SMG5	99	66.601	Heterocephalus_glaber_female
ENSAPOG00000019690	smg5	89	67.358	ENSHGLG00100015948	SMG5	99	67.541	Heterocephalus_glaber_male
ENSAPOG00000019690	smg5	99	66.053	ENSHCOG00000010229	smg5	94	86.000	Hippocampus_comes
ENSAPOG00000019690	smg5	100	77.768	ENSIPUG00000006624	Smg5	100	76.964	Ictalurus_punctatus
ENSAPOG00000019690	smg5	99	66.699	ENSSTOG00000001780	SMG5	99	67.485	Ictidomys_tridecemlineatus
ENSAPOG00000019690	smg5	99	67.353	ENSJJAG00000022763	Smg5	99	67.188	Jaculus_jaculus
ENSAPOG00000019690	smg5	100	91.578	ENSKMAG00000014586	smg5	100	91.489	Kryptolebias_marmoratus
ENSAPOG00000019690	smg5	100	92.369	ENSLBEG00000002145	smg5	100	93.079	Labrus_bergylta
ENSAPOG00000019690	smg5	99	60.134	ENSLACG00000010521	SMG5	99	60.383	Latimeria_chalumnae
ENSAPOG00000019690	smg5	100	69.312	ENSLOCG00000008380	smg5	99	71.800	Lepisosteus_oculatus
ENSAPOG00000019690	smg5	100	66.082	ENSLAFG00000006241	SMG5	99	67.359	Loxodonta_africana
ENSAPOG00000019690	smg5	99	66.896	ENSMFAG00000045357	SMG5	99	67.647	Macaca_fascicularis
ENSAPOG00000019690	smg5	93	77.336	ENSMMUG00000000090	SMG5	99	68.353	Macaca_mulatta
ENSAPOG00000019690	smg5	99	66.798	ENSMNEG00000044425	SMG5	99	67.549	Macaca_nemestrina
ENSAPOG00000019690	smg5	93	67.523	ENSMLEG00000041192	SMG5	99	62.207	Mandrillus_leucophaeus
ENSAPOG00000019690	smg5	100	91.940	ENSMAMG00000010683	smg5	100	92.117	Mastacembelus_armatus
ENSAPOG00000019690	smg5	99	85.463	ENSMZEG00005015815	smg5	99	85.561	Maylandia_zebra
ENSAPOG00000019690	smg5	62	85.559	ENSMZEG00005016543	smg5	100	86.957	Maylandia_zebra
ENSAPOG00000019690	smg5	55	40.411	ENSMAUG00000000043	-	96	41.156	Mesocricetus_auratus
ENSAPOG00000019690	smg5	99	67.456	ENSMAUG00000010381	Smg5	99	67.157	Mesocricetus_auratus
ENSAPOG00000019690	smg5	93	77.647	ENSMICG00000002257	SMG5	99	67.554	Microcebus_murinus
ENSAPOG00000019690	smg5	99	66.995	ENSMOCG00000016590	Smg5	99	66.928	Microtus_ochrogaster
ENSAPOG00000019690	smg5	100	86.307	ENSMMOG00000017199	smg5	100	86.661	Mola_mola
ENSAPOG00000019690	smg5	91	34.771	ENSMODG00000004735	-	86	34.771	Monodelphis_domestica
ENSAPOG00000019690	smg5	97	30.898	ENSMODG00000004511	-	77	35.526	Monodelphis_domestica
ENSAPOG00000019690	smg5	80	35.338	ENSMODG00000004532	-	87	35.338	Monodelphis_domestica
ENSAPOG00000019690	smg5	86	66.591	ENSMODG00000016901	SMG5	98	66.966	Monodelphis_domestica
ENSAPOG00000019690	smg5	77	34.375	ENSMODG00000010675	-	90	33.756	Monodelphis_domestica
ENSAPOG00000019690	smg5	100	90.514	ENSMALG00000010375	smg5	100	89.628	Monopterus_albus
ENSAPOG00000019690	smg5	99	66.995	MGP_CAROLIEiJ_G0025163	Smg5	100	88.268	Mus_caroli
ENSAPOG00000019690	smg5	99	67.028	ENSMUSG00000001415	Smg5	99	88.268	Mus_musculus
ENSAPOG00000019690	smg5	99	67.092	MGP_PahariEiJ_G0026606	Smg5	100	88.827	Mus_pahari
ENSAPOG00000019690	smg5	99	66.929	MGP_SPRETEiJ_G0026104	Smg5	100	88.268	Mus_spretus
ENSAPOG00000019690	smg5	87	75.890	ENSMPUG00000004546	SMG5	100	65.579	Mustela_putorius_furo
ENSAPOG00000019690	smg5	99	67.549	ENSMLUG00000008518	SMG5	99	67.615	Myotis_lucifugus
ENSAPOG00000019690	smg5	99	66.634	ENSNGAG00000020706	Smg5	99	66.470	Nannospalax_galili
ENSAPOG00000019690	smg5	78	48.655	ENSNGAG00000012101	-	99	39.130	Nannospalax_galili
ENSAPOG00000019690	smg5	97	84.086	ENSNBRG00000004332	smg5	98	84.520	Neolamprologus_brichardi
ENSAPOG00000019690	smg5	92	77.336	ENSNLEG00000012439	SMG5	99	67.647	Nomascus_leucogenys
ENSAPOG00000019690	smg5	99	65.748	ENSMEUG00000012834	SMG5	99	66.243	Notamacropus_eugenii
ENSAPOG00000019690	smg5	99	66.634	ENSOPRG00000009152	SMG5	99	66.699	Ochotona_princeps
ENSAPOG00000019690	smg5	99	66.309	ENSODEG00000012237	SMG5	99	67.713	Octodon_degus
ENSAPOG00000019690	smg5	100	91.947	ENSONIG00000008632	smg5	100	91.593	Oreochromis_niloticus
ENSAPOG00000019690	smg5	98	66.700	ENSOCUG00000012886	SMG5	100	67.402	Oryctolagus_cuniculus
ENSAPOG00000019690	smg5	89	37.077	ENSOCUG00000023338	-	99	36.583	Oryctolagus_cuniculus
ENSAPOG00000019690	smg5	100	85.537	ENSORLG00000016239	smg5	100	86.513	Oryzias_latipes
ENSAPOG00000019690	smg5	100	85.727	ENSORLG00020013127	smg5	100	86.335	Oryzias_latipes_hni
ENSAPOG00000019690	smg5	100	85.359	ENSORLG00015019014	smg5	100	86.335	Oryzias_latipes_hsok
ENSAPOG00000019690	smg5	84	85.428	ENSOMEG00000021330	smg5	93	84.915	Oryzias_melastigma
ENSAPOG00000019690	smg5	99	65.714	ENSOGAG00000004966	SMG5	99	66.798	Otolemur_garnettii
ENSAPOG00000019690	smg5	99	40.533	ENSOARG00000011963	-	93	49.642	Ovis_aries
ENSAPOG00000019690	smg5	93	77.494	ENSOARG00000005778	SMG5	99	67.815	Ovis_aries
ENSAPOG00000019690	smg5	92	76.869	ENSPPAG00000011996	SMG5	99	67.549	Pan_paniscus
ENSAPOG00000019690	smg5	91	77.696	ENSPPRG00000011901	SMG5	100	67.069	Panthera_pardus
ENSAPOG00000019690	smg5	90	75.430	ENSPTIG00000007892	SMG5	98	63.711	Panthera_tigris_altaica
ENSAPOG00000019690	smg5	92	76.869	ENSPTRG00000049282	-	99	67.549	Pan_troglodytes
ENSAPOG00000019690	smg5	92	76.869	ENSPTRG00000023925	SMG5	99	67.549	Pan_troglodytes
ENSAPOG00000019690	smg5	99	66.896	ENSPANG00000011201	SMG5	99	67.647	Papio_anubis
ENSAPOG00000019690	smg5	99	78.809	ENSPKIG00000009402	smg5	99	78.711	Paramormyrops_kingsleyae
ENSAPOG00000019690	smg5	98	67.818	ENSPSIG00000015198	SMG5	100	67.262	Pelodiscus_sinensis
ENSAPOG00000019690	smg5	100	72.832	ENSPMGG00000010465	smg5	100	72.248	Periophthalmus_magnuspinnatus
ENSAPOG00000019690	smg5	99	67.554	ENSPEMG00000001819	Smg5	99	67.357	Peromyscus_maniculatus_bairdii
ENSAPOG00000019690	smg5	57	40.536	ENSPEMG00000010022	-	68	50.758	Peromyscus_maniculatus_bairdii
ENSAPOG00000019690	smg5	98	49.902	ENSPMAG00000000410	smg5	91	61.557	Petromyzon_marinus
ENSAPOG00000019690	smg5	92	77.069	ENSPCIG00000018938	SMG5	99	66.929	Phascolarctos_cinereus
ENSAPOG00000019690	smg5	100	88.199	ENSPFOG00000010191	smg5	100	88.731	Poecilia_formosa
ENSAPOG00000019690	smg5	100	88.110	ENSPLAG00000009332	smg5	100	88.820	Poecilia_latipinna
ENSAPOG00000019690	smg5	100	88.287	ENSPMEG00000014105	smg5	100	88.820	Poecilia_mexicana
ENSAPOG00000019690	smg5	100	88.287	ENSPREG00000017713	smg5	100	89.264	Poecilia_reticulata
ENSAPOG00000019690	smg5	92	77.103	ENSPPYG00000000723	SMG5	99	67.647	Pongo_abelii
ENSAPOG00000019690	smg5	75	80.556	ENSPCAG00000008412	SMG5	81	80.556	Procavia_capensis
ENSAPOG00000019690	smg5	93	77.882	ENSPCOG00000004741	SMG5	99	67.783	Propithecus_coquereli
ENSAPOG00000019690	smg5	99	59.433	ENSPVAG00000016748	SMG5	99	59.941	Pteropus_vampyrus
ENSAPOG00000019690	smg5	100	90.925	ENSPNYG00000013397	smg5	100	91.182	Pundamilia_nyererei
ENSAPOG00000019690	smg5	100	79.097	ENSPNAG00000028363	smg5	100	78.831	Pygocentrus_nattereri
ENSAPOG00000019690	smg5	99	67.224	ENSRNOG00000019590	Smg5	99	66.895	Rattus_norvegicus
ENSAPOG00000019690	smg5	99	66.601	ENSRBIG00000027428	SMG5	99	67.353	Rhinopithecus_bieti
ENSAPOG00000019690	smg5	99	66.503	ENSRROG00000030035	SMG5	99	67.255	Rhinopithecus_roxellana
ENSAPOG00000019690	smg5	93	77.336	ENSSBOG00000033339	SMG5	99	67.415	Saimiri_boliviensis_boliviensis
ENSAPOG00000019690	smg5	80	42.271	ENSSHAG00000009572	-	81	42.271	Sarcophilus_harrisii
ENSAPOG00000019690	smg5	77	36.434	ENSSHAG00000000561	-	88	35.696	Sarcophilus_harrisii
ENSAPOG00000019690	smg5	55	36.623	ENSSHAG00000000935	-	81	35.949	Sarcophilus_harrisii
ENSAPOG00000019690	smg5	98	66.201	ENSSHAG00000014163	SMG5	100	66.468	Sarcophilus_harrisii
ENSAPOG00000019690	smg5	99	80.176	ENSSFOG00015024175	smg5	99	80.547	Scleropages_formosus
ENSAPOG00000019690	smg5	100	92.642	ENSSMAG00000013059	smg5	100	92.819	Scophthalmus_maximus
ENSAPOG00000019690	smg5	100	94.956	ENSSDUG00000007122	smg5	100	94.779	Seriola_dumerili
ENSAPOG00000019690	smg5	100	93.628	ENSSLDG00000011418	smg5	100	94.159	Seriola_lalandi_dorsalis
ENSAPOG00000019690	smg5	89	59.649	ENSSARG00000012484	SMG5	94	70.504	Sorex_araneus
ENSAPOG00000019690	smg5	93	65.758	ENSSPUG00000002260	SMG5	100	65.996	Sphenodon_punctatus
ENSAPOG00000019690	smg5	100	96.014	ENSSPAG00000014266	smg5	100	96.103	Stegastes_partitus
ENSAPOG00000019690	smg5	99	53.200	ENSSSCG00000039308	-	99	53.447	Sus_scrofa
ENSAPOG00000019690	smg5	99	66.994	ENSSSCG00000006490	-	100	66.807	Sus_scrofa
ENSAPOG00000019690	smg5	99	67.618	ENSTGUG00000003748	-	99	67.289	Taeniopygia_guttata
ENSAPOG00000019690	smg5	100	83.009	ENSTRUG00000012580	smg5	100	82.743	Takifugu_rubripes
ENSAPOG00000019690	smg5	100	82.558	ENSTNIG00000010303	smg5	100	82.099	Tetraodon_nigroviridis
ENSAPOG00000019690	smg5	59	84.236	ENSTBEG00000002777	SMG5	58	84.236	Tupaia_belangeri
ENSAPOG00000019690	smg5	99	62.770	ENSTTRG00000001401	SMG5	99	63.153	Tursiops_truncatus
ENSAPOG00000019690	smg5	92	75.708	ENSUAMG00000013721	SMG5	99	66.700	Ursus_americanus
ENSAPOG00000019690	smg5	91	74.083	ENSUMAG00000018041	SMG5	94	73.349	Ursus_maritimus
ENSAPOG00000019690	smg5	92	72.277	ENSVPAG00000009446	SMG5	99	59.619	Vicugna_pacos
ENSAPOG00000019690	smg5	99	67.063	ENSVVUG00000005887	SMG5	99	67.031	Vulpes_vulpes
ENSAPOG00000019690	smg5	76	57.576	ENSXETG00000033791	SMG5	95	59.103	Xenopus_tropicalis
ENSAPOG00000019690	smg5	92	91.892	ENSXCOG00000004379	smg5	100	91.892	Xiphophorus_couchianus
ENSAPOG00000019690	smg5	100	87.311	ENSXMAG00000013499	smg5	100	88.287	Xiphophorus_maculatus