EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSAPOG00000020156 (Gene tree)
Gene ID: 110952556
Gene Symbol: SMARCAL1
Alias: im:7145331|si:ch211-239d11.1
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a like 1
Gene Type: protein_coding
Species: Acanthochromis_polyacanthus
Status: putative
Strand: Minus strand
Length: 19849 bases
Position: chrMVNR01000248.1:87781-107629
Accession: 110952556
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAPOP00000016962	ResIII	PF04851.15	1.2e-06	1	1
ENSAPOP00000032291	ResIII	PF04851.15	1.2e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAPOT00000026073	SMARCAL1-201	2730	XM_022196150	ENSAPOP00000032291	866 (aa)	XP_022051842	UPI000B8EF50B
ENSAPOT00000026092	SMARCAL1-202	2871	XM_022196149	ENSAPOP00000016962	913 (aa)	XP_022051841	UPI000B9046CB

Gene Model

Click here to download ENSAPOG00000020156's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAPOG00000020156's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAPOG00000020156	SMARCAL1	96	52.030	ENSG00000138375	SMARCAL1	99	68.323	Homo_sapiens
ENSAPOG00000020156	SMARCAL1	87	87.413	ENSACIG00000001500	smarcal1	97	87.413	Amphilophus_citrinellus
ENSAPOG00000020156	SMARCAL1	98	93.437	ENSAOCG00000014266	SMARCAL1	100	93.437	Amphiprion_ocellaris
ENSAPOG00000020156	SMARCAL1	100	93.976	ENSAPEG00000015861	SMARCAL1	100	94.862	Amphiprion_percula
ENSAPOG00000020156	SMARCAL1	99	81.373	ENSATEG00000020624	SMARCAL1	99	81.264	Anabas_testudineus
ENSAPOG00000020156	SMARCAL1	100	52.546	ENSAPLG00000009864	SMARCAL1	100	52.637	Anas_platyrhynchos
ENSAPOG00000020156	SMARCAL1	99	53.401	ENSACAG00000004612	SMARCAL1	99	53.293	Anolis_carolinensis
ENSAPOG00000020156	SMARCAL1	99	82.503	ENSACLG00000015990	SMARCAL1	99	82.503	Astatotilapia_calliptera
ENSAPOG00000020156	SMARCAL1	99	66.268	ENSAMXG00000003350	smarcal1	99	66.268	Astyanax_mexicanus
ENSAPOG00000020156	SMARCAL1	91	63.016	ENSCPBG00000013599	SMARCAL1	85	63.016	Chrysemys_picta_bellii
ENSAPOG00000020156	SMARCAL1	80	48.438	ENSCING00000009308	-	100	48.438	Ciona_intestinalis
ENSAPOG00000020156	SMARCAL1	97	74.190	ENSCSEG00000010785	SMARCAL1	99	74.190	Cynoglossus_semilaevis
ENSAPOG00000020156	SMARCAL1	99	74.589	ENSCVAG00000018780	SMARCAL1	99	74.480	Cyprinodon_variegatus
ENSAPOG00000020156	SMARCAL1	57	55.641	ENSEBUG00000011906	SMARCAL1	72	55.641	Eptatretus_burgeri
ENSAPOG00000020156	SMARCAL1	99	73.529	ENSELUG00000010440	-	99	65.011	Esox_lucius
ENSAPOG00000020156	SMARCAL1	96	53.690	ENSFALG00000003981	SMARCAL1	71	64.971	Ficedula_albicollis
ENSAPOG00000020156	SMARCAL1	99	76.316	ENSFHEG00000008380	SMARCAL1	99	76.316	Fundulus_heteroclitus
ENSAPOG00000020156	SMARCAL1	58	75.414	ENSGMOG00000010034	smarcal1	95	75.414	Gadus_morhua
ENSAPOG00000020156	SMARCAL1	96	53.191	ENSGALG00000011475	RPL37A	96	52.872	Gallus_gallus
ENSAPOG00000020156	SMARCAL1	75	84.299	ENSGACG00000006073	SMARCAL1	100	86.965	Gasterosteus_aculeatus
ENSAPOG00000020156	SMARCAL1	72	67.328	ENSGAGG00000015660	SMARCAL1	71	67.328	Gopherus_agassizii
ENSAPOG00000020156	SMARCAL1	99	82.060	ENSHBUG00000002973	smarcal1	99	82.060	Haplochromis_burtoni
ENSAPOG00000020156	SMARCAL1	95	72.165	ENSHCOG00000017921	smarcal1	98	71.771	Hippocampus_comes
ENSAPOG00000020156	SMARCAL1	97	77.350	ENSKMAG00000012023	SMARCAL1	99	77.350	Kryptolebias_marmoratus
ENSAPOG00000020156	SMARCAL1	91	79.977	ENSLBEG00000003493	smarcal1	100	79.977	Labrus_bergylta
ENSAPOG00000020156	SMARCAL1	89	84.499	ENSLBEG00000022915	smarcal1	100	84.499	Labrus_bergylta
ENSAPOG00000020156	SMARCAL1	79	60.828	ENSLACG00000010974	SMARCAL1	99	51.724	Latimeria_chalumnae
ENSAPOG00000020156	SMARCAL1	93	63.170	ENSLOCG00000009637	smarcal1	99	62.890	Lepisosteus_oculatus
ENSAPOG00000020156	SMARCAL1	98	79.111	ENSMAMG00000000828	SMARCAL1	99	79.000	Mastacembelus_armatus
ENSAPOG00000020156	SMARCAL1	99	82.392	ENSMZEG00005007660	SMARCAL1	99	82.392	Maylandia_zebra
ENSAPOG00000020156	SMARCAL1	96	54.857	ENSMGAG00000011658	SMARCAL1	96	54.775	Meleagris_gallopavo
ENSAPOG00000020156	SMARCAL1	84	81.197	ENSMMOG00000003842	smarcal1	94	81.197	Mola_mola
ENSAPOG00000020156	SMARCAL1	99	50.668	ENSMODG00000015544	SMARCAL1	75	59.807	Monodelphis_domestica
ENSAPOG00000020156	SMARCAL1	87	87.815	ENSNBRG00000016273	smarcal1	97	87.815	Neolamprologus_brichardi
ENSAPOG00000020156	SMARCAL1	92	51.624	ENSMEUG00000004395	SMARCAL1	73	63.297	Notamacropus_eugenii
ENSAPOG00000020156	SMARCAL1	99	81.949	ENSONIG00000009036	smarcal1	100	89.181	Oreochromis_niloticus
ENSAPOG00000020156	SMARCAL1	99	74.591	ENSORLG00000016455	SMARCAL1	99	74.373	Oryzias_latipes
ENSAPOG00000020156	SMARCAL1	99	74.591	ENSORLG00020001610	SMARCAL1	99	74.373	Oryzias_latipes_hni
ENSAPOG00000020156	SMARCAL1	99	74.591	ENSORLG00015001865	SMARCAL1	99	74.373	Oryzias_latipes_hsok
ENSAPOG00000020156	SMARCAL1	99	75.163	ENSOMEG00000001845	smarcal1	99	75.163	Oryzias_melastigma
ENSAPOG00000020156	SMARCAL1	99	72.609	ENSPMGG00000019092	SMARCAL1	99	73.073	Periophthalmus_magnuspinnatus
ENSAPOG00000020156	SMARCAL1	78	58.889	ENSPCIG00000022514	SMARCAL1	72	61.444	Phascolarctos_cinereus
ENSAPOG00000020156	SMARCAL1	99	75.847	ENSPFOG00000000560	SMARCAL1	99	75.628	Poecilia_formosa
ENSAPOG00000020156	SMARCAL1	99	75.847	ENSPMEG00000018146	SMARCAL1	99	75.628	Poecilia_mexicana
ENSAPOG00000020156	SMARCAL1	60	87.037	ENSPREG00000009591	SMARCAL1	97	87.037	Poecilia_reticulata
ENSAPOG00000020156	SMARCAL1	99	66.050	ENSPNAG00000014900	smarcal1	94	66.268	Pygocentrus_nattereri
ENSAPOG00000020156	SMARCAL1	78	57.359	ENSSHAG00000013538	SMARCAL1	79	57.359	Sarcophilus_harrisii
ENSAPOG00000020156	SMARCAL1	99	79.676	ENSSMAG00000010427	SMARCAL1	99	79.676	Scophthalmus_maximus
ENSAPOG00000020156	SMARCAL1	97	84.211	ENSSDUG00000017470	SMARCAL1	95	84.211	Seriola_dumerili
ENSAPOG00000020156	SMARCAL1	99	82.916	ENSSLDG00000007224	SMARCAL1	99	82.916	Seriola_lalandi_dorsalis
ENSAPOG00000020156	SMARCAL1	83	62.065	ENSSPUG00000015369	SMARCAL1	75	63.298	Sphenodon_punctatus
ENSAPOG00000020156	SMARCAL1	93	83.117	ENSSPAG00000003742	smarcal1	99	83.137	Stegastes_partitus
ENSAPOG00000020156	SMARCAL1	76	57.971	ENSSSCG00000035501	SMARCAL1	76	58.032	Sus_scrofa
ENSAPOG00000020156	SMARCAL1	74	63.436	ENSTGUG00000005079	SMARCAL1	99	63.436	Taeniopygia_guttata
ENSAPOG00000020156	SMARCAL1	99	63.956	ENSTRUG00000010701	SMARCAL1	99	64.356	Takifugu_rubripes
ENSAPOG00000020156	SMARCAL1	99	44.853	ENSTTRG00000009001	SMARCAL1	99	45.005	Tursiops_truncatus
ENSAPOG00000020156	SMARCAL1	99	56.126	ENSXETG00000000465	smarcal1	77	65.437	Xenopus_tropicalis