EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAPOG00000020850 (Gene tree)
Gene ID: 110959550
Gene Symbol: r3hdm1
Alias: WITHDRAWN: wu:fj35h04|fj35h04|fk85b04|id:ibd5043|sb:eu460|si:ch73-60i13.2|wu:fj35h04|wu:fk85b04
Full Name: R3H domain-containing protein 1-like
Gene Type: protein_coding
Species: Acanthochromis_polyacanthus
Status: putative
Strand: Plus strand
Length: 50243 bases
Position: chrMVNR01000703.1:168710-218952
Accession: 110959550
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAPOP00000017634	R3H	PF01424.22	3.1e-12	1	1
ENSAPOP00000032722	R3H	PF01424.22	3.1e-12	1	1
ENSAPOP00000032736	R3H	PF01424.22	3.2e-12	1	1
ENSAPOP00000032712	R3H	PF01424.22	3.5e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAPOT00000026944	-	7144	XM_022206440	ENSAPOP00000032722	1041 (aa)	XP_022062132	-
ENSAPOT00000034117	-	3831	-	ENSAPOP00000017634	1041 (aa)	-	-
ENSAPOT00000026955	-	7162	XM_022206439	ENSAPOP00000032736	1047 (aa)	XP_022062131	-
ENSAPOT00000034094	-	4223	XM_022206436	ENSAPOP00000032712	1077 (aa)	XP_022062128	-

Gene Model

Click here to download ENSAPOG00000020850's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAPOG00000020850's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAPOG00000020850	r3hdm1	76	63.469	ENSAPOG00000020341	r3hdm2	79	56.268

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAPOG00000020850	r3hdm1	92	63.467	ENSG00000048991	R3HDM1	97	64.931	Homo_sapiens
ENSAPOG00000020850	r3hdm1	97	47.544	ENSAMEG00000014886	R3HDM1	89	47.938	Ailuropoda_melanoleuca
ENSAPOG00000020850	r3hdm1	96	97.601	ENSAOCG00000005192	r3hdm1	100	97.601	Amphiprion_ocellaris
ENSAPOG00000020850	r3hdm1	96	96.928	ENSAPEG00000016108	r3hdm1	100	96.928	Amphiprion_percula
ENSAPOG00000020850	r3hdm1	96	89.353	ENSATEG00000000232	r3hdm1	100	89.353	Anabas_testudineus
ENSAPOG00000020850	r3hdm1	97	47.204	ENSAPLG00000015231	R3HDM1	89	47.963	Anas_platyrhynchos
ENSAPOG00000020850	r3hdm1	97	50.185	ENSACAG00000001676	R3HDM1	89	50.184	Anolis_carolinensis
ENSAPOG00000020850	r3hdm1	92	63.733	ENSANAG00000035334	R3HDM1	88	63.733	Aotus_nancymaae
ENSAPOG00000020850	r3hdm1	96	85.388	ENSACLG00000027282	r3hdm1	100	86.083	Astatotilapia_calliptera
ENSAPOG00000020850	r3hdm1	84	71.835	ENSAMXG00000003536	r3hdm1	85	66.929	Astyanax_mexicanus
ENSAPOG00000020850	r3hdm1	89	64.649	ENSAMXG00000012861	R3HDM1	89	63.923	Astyanax_mexicanus
ENSAPOG00000020850	r3hdm1	97	49.582	ENSBTAG00000013302	R3HDM1	89	49.908	Bos_taurus
ENSAPOG00000020850	r3hdm1	92	63.467	ENSCJAG00000011718	R3HDM1	88	63.467	Callithrix_jacchus
ENSAPOG00000020850	r3hdm1	97	47.544	ENSCAFG00000005075	R3HDM1	89	47.846	Canis_familiaris
ENSAPOG00000020850	r3hdm1	97	49.398	ENSCAFG00020016119	R3HDM1	99	57.321	Canis_lupus_dingo
ENSAPOG00000020850	r3hdm1	97	49.396	ENSCHIG00000020851	R3HDM1	89	50.185	Capra_hircus
ENSAPOG00000020850	r3hdm1	97	48.516	ENSCPOG00000012784	R3HDM1	100	61.204	Cavia_porcellus
ENSAPOG00000020850	r3hdm1	92	62.933	ENSCCAG00000027199	R3HDM1	88	62.933	Cebus_capucinus
ENSAPOG00000020850	r3hdm1	90	59.465	ENSCATG00000023642	R3HDM1	88	63.200	Cercocebus_atys
ENSAPOG00000020850	r3hdm1	97	48.260	ENSCLAG00000007962	R3HDM1	100	63.545	Chinchilla_lanigera
ENSAPOG00000020850	r3hdm1	97	48.749	ENSCSAG00000016356	R3HDM1	90	49.084	Chlorocebus_sabaeus
ENSAPOG00000020850	r3hdm1	78	65.649	ENSCHOG00000013638	R3HDM1	69	65.649	Choloepus_hoffmanni
ENSAPOG00000020850	r3hdm1	80	70.144	ENSCPBG00000009645	R3HDM1	86	70.144	Chrysemys_picta_bellii
ENSAPOG00000020850	r3hdm1	92	63.200	ENSCANG00000034748	R3HDM1	88	63.200	Colobus_angolensis_palliatus
ENSAPOG00000020850	r3hdm1	97	48.282	ENSCGRG00001012357	R3hdm1	87	48.799	Cricetulus_griseus_chok1gshd
ENSAPOG00000020850	r3hdm1	97	48.282	ENSCGRG00000012080	R3hdm1	100	64.548	Cricetulus_griseus_crigri
ENSAPOG00000020850	r3hdm1	96	71.944	ENSCSEG00000008944	r3hdm1	100	73.265	Cynoglossus_semilaevis
ENSAPOG00000020850	r3hdm1	96	82.934	ENSCVAG00000007582	r3hdm1	100	83.030	Cyprinodon_variegatus
ENSAPOG00000020850	r3hdm1	97	45.899	ENSDNOG00000000771	R3HDM1	89	46.337	Dasypus_novemcinctus
ENSAPOG00000020850	r3hdm1	73	58.020	ENSETEG00000013606	R3HDM1	89	44.312	Echinops_telfairi
ENSAPOG00000020850	r3hdm1	92	61.814	ENSEASG00005007392	R3HDM1	89	62.053	Equus_asinus_asinus
ENSAPOG00000020850	r3hdm1	92	61.814	ENSECAG00000019114	R3HDM1	89	62.053	Equus_caballus
ENSAPOG00000020850	r3hdm1	53	54.023	ENSEEUG00000012589	R3HDM1	56	52.143	Erinaceus_europaeus
ENSAPOG00000020850	r3hdm1	89	50.625	ENSELUG00000014413	r3hdm1	84	51.670	Esox_lucius
ENSAPOG00000020850	r3hdm1	94	52.046	ENSELUG00000004909	R3HDM1	87	52.846	Esox_lucius
ENSAPOG00000020850	r3hdm1	92	61.337	ENSFCAG00000027113	R3HDM1	88	62.053	Felis_catus
ENSAPOG00000020850	r3hdm1	81	51.774	ENSFALG00000013731	R3HDM1	90	46.410	Ficedula_albicollis
ENSAPOG00000020850	r3hdm1	97	48.656	ENSFDAG00000016478	R3HDM1	100	64.548	Fukomys_damarensis
ENSAPOG00000020850	r3hdm1	96	83.238	ENSFHEG00000018713	r3hdm1	100	83.429	Fundulus_heteroclitus
ENSAPOG00000020850	r3hdm1	65	63.125	ENSGMOG00000006042	-	80	56.432	Gadus_morhua
ENSAPOG00000020850	r3hdm1	92	61.376	ENSGALG00000012246	R3HDM1	85	65.049	Gallus_gallus
ENSAPOG00000020850	r3hdm1	98	76.670	ENSGAFG00000006203	r3hdm1	100	78.360	Gambusia_affinis
ENSAPOG00000020850	r3hdm1	92	83.557	ENSGACG00000014925	r3hdm1	96	83.434	Gasterosteus_aculeatus
ENSAPOG00000020850	r3hdm1	84	65.217	ENSGAGG00000007840	R3HDM1	84	61.029	Gopherus_agassizii
ENSAPOG00000020850	r3hdm1	92	63.467	ENSGGOG00000008156	R3HDM1	88	63.467	Gorilla_gorilla
ENSAPOG00000020850	r3hdm1	50	89.963	ENSHBUG00000015737	R3HDM1	96	91.264	Haplochromis_burtoni
ENSAPOG00000020850	r3hdm1	97	49.029	ENSHGLG00000015718	R3HDM1	100	63.880	Heterocephalus_glaber_female
ENSAPOG00000020850	r3hdm1	97	48.936	ENSHGLG00100003184	-	100	64.214	Heterocephalus_glaber_male
ENSAPOG00000020850	r3hdm1	80	47.771	ENSHGLG00100015374	-	91	39.415	Heterocephalus_glaber_male
ENSAPOG00000020850	r3hdm1	96	71.131	ENSHCOG00000013366	r3hdm1	100	71.329	Hippocampus_comes
ENSAPOG00000020850	r3hdm1	83	70.588	ENSIPUG00000013629	r3hdm1	86	69.608	Ictalurus_punctatus
ENSAPOG00000020850	r3hdm1	83	71.250	ENSIPUG00000001676	R3HDM1	100	63.017	Ictalurus_punctatus
ENSAPOG00000020850	r3hdm1	97	49.490	ENSSTOG00000007572	R3HDM1	100	64.883	Ictidomys_tridecemlineatus
ENSAPOG00000020850	r3hdm1	89	63.357	ENSLACG00000005334	R3HDM1	89	62.648	Latimeria_chalumnae
ENSAPOG00000020850	r3hdm1	97	50.914	ENSLOCG00000001641	r3hdm1	90	52.170	Lepisosteus_oculatus
ENSAPOG00000020850	r3hdm1	84	66.972	ENSLAFG00000009065	R3HDM1	86	67.139	Loxodonta_africana
ENSAPOG00000020850	r3hdm1	90	59.656	ENSMFAG00000030331	R3HDM1	88	63.467	Macaca_fascicularis
ENSAPOG00000020850	r3hdm1	84	64.096	ENSMMUG00000009844	R3HDM1	88	63.467	Macaca_mulatta
ENSAPOG00000020850	r3hdm1	92	61.814	ENSMNEG00000027793	R3HDM1	88	63.467	Macaca_nemestrina
ENSAPOG00000020850	r3hdm1	90	59.656	ENSMLEG00000043189	R3HDM1	88	63.467	Mandrillus_leucophaeus
ENSAPOG00000020850	r3hdm1	96	88.868	ENSMAMG00000004532	r3hdm1	100	88.868	Mastacembelus_armatus
ENSAPOG00000020850	r3hdm1	96	89.080	ENSMZEG00005003157	r3hdm1	100	90.038	Maylandia_zebra
ENSAPOG00000020850	r3hdm1	97	47.261	ENSMGAG00000012461	R3HDM1	89	47.398	Meleagris_gallopavo
ENSAPOG00000020850	r3hdm1	97	48.844	ENSMAUG00000010315	R3hdm1	100	64.548	Mesocricetus_auratus
ENSAPOG00000020850	r3hdm1	92	62.933	ENSMICG00000042655	-	92	62.933	Microcebus_murinus
ENSAPOG00000020850	r3hdm1	92	63.200	ENSMICG00000005900	-	88	63.200	Microcebus_murinus
ENSAPOG00000020850	r3hdm1	97	47.653	ENSMODG00000000923	R3HDM1	96	47.799	Monodelphis_domestica
ENSAPOG00000020850	r3hdm1	97	86.807	ENSMALG00000009000	r3hdm1	91	86.711	Monopterus_albus
ENSAPOG00000020850	r3hdm1	97	47.915	MGP_CAROLIEiJ_G0014543	R3hdm1	100	64.898	Mus_caroli
ENSAPOG00000020850	r3hdm1	97	47.822	ENSMUSG00000056211	R3hdm1	100	64.898	Mus_musculus
ENSAPOG00000020850	r3hdm1	97	47.451	MGP_PahariEiJ_G0027779	R3hdm1	100	64.898	Mus_pahari
ENSAPOG00000020850	r3hdm1	97	47.822	MGP_SPRETEiJ_G0015350	R3hdm1	100	64.898	Mus_spretus
ENSAPOG00000020850	r3hdm1	99	46.883	ENSMPUG00000002412	R3HDM1	92	47.227	Mustela_putorius_furo
ENSAPOG00000020850	r3hdm1	97	46.886	ENSMLUG00000013824	R3HDM1	89	47.746	Myotis_lucifugus
ENSAPOG00000020850	r3hdm1	90	59.656	ENSNLEG00000008622	R3HDM1	88	63.467	Nomascus_leucogenys
ENSAPOG00000020850	r3hdm1	91	41.457	ENSMEUG00000011784	R3HDM1	93	42.480	Notamacropus_eugenii
ENSAPOG00000020850	r3hdm1	97	48.100	ENSODEG00000008607	R3HDM1	100	64.214	Octodon_degus
ENSAPOG00000020850	r3hdm1	92	83.890	ENSONIG00000012017	r3hdm1	90	83.890	Oreochromis_niloticus
ENSAPOG00000020850	r3hdm1	97	46.020	ENSOANG00000007987	R3HDM1	89	46.898	Ornithorhynchus_anatinus
ENSAPOG00000020850	r3hdm1	97	47.173	ENSOCUG00000017366	R3HDM1	98	48.018	Oryctolagus_cuniculus
ENSAPOG00000020850	r3hdm1	96	76.533	ENSORLG00000004297	r3hdm1	100	76.820	Oryzias_latipes
ENSAPOG00000020850	r3hdm1	98	75.949	ENSORLG00015017355	r3hdm1	100	77.011	Oryzias_latipes_hsok
ENSAPOG00000020850	r3hdm1	50	81.434	ENSOMEG00000003882	-	99	81.618	Oryzias_melastigma
ENSAPOG00000020850	r3hdm1	97	47.266	ENSOGAG00000003136	R3HDM1	89	47.830	Otolemur_garnettii
ENSAPOG00000020850	r3hdm1	97	47.354	ENSOARG00000010788	R3HDM1	89	48.563	Ovis_aries
ENSAPOG00000020850	r3hdm1	92	63.467	ENSPPAG00000027858	R3HDM1	88	63.467	Pan_paniscus
ENSAPOG00000020850	r3hdm1	92	62.933	ENSPPRG00000002626	R3HDM1	88	62.933	Panthera_pardus
ENSAPOG00000020850	r3hdm1	92	63.200	ENSPTIG00000016581	R3HDM1	88	63.200	Panthera_tigris_altaica
ENSAPOG00000020850	r3hdm1	92	63.467	ENSPTRG00000012494	R3HDM1	88	63.467	Pan_troglodytes
ENSAPOG00000020850	r3hdm1	90	59.656	ENSPANG00000026448	R3HDM1	88	63.467	Papio_anubis
ENSAPOG00000020850	r3hdm1	85	73.684	ENSPKIG00000004328	r3hdm1	78	72.697	Paramormyrops_kingsleyae
ENSAPOG00000020850	r3hdm1	97	46.809	ENSPSIG00000012915	R3HDM1	89	47.509	Pelodiscus_sinensis
ENSAPOG00000020850	r3hdm1	97	47.822	ENSPEMG00000015187	R3hdm1	100	64.548	Peromyscus_maniculatus_bairdii
ENSAPOG00000020850	r3hdm1	92	60.570	ENSPCIG00000002491	R3HDM1	89	60.613	Phascolarctos_cinereus
ENSAPOG00000020850	r3hdm1	96	82.493	ENSPFOG00000015036	r3hdm1	100	82.493	Poecilia_formosa
ENSAPOG00000020850	r3hdm1	96	78.128	ENSPLAG00000018042	r3hdm1	100	78.128	Poecilia_latipinna
ENSAPOG00000020850	r3hdm1	96	78.128	ENSPMEG00000023947	r3hdm1	100	78.128	Poecilia_mexicana
ENSAPOG00000020850	r3hdm1	96	82.061	ENSPREG00000007902	r3hdm1	100	82.347	Poecilia_reticulata
ENSAPOG00000020850	r3hdm1	84	59.821	ENSPCAG00000006208	R3HDM1	77	60.534	Procavia_capensis
ENSAPOG00000020850	r3hdm1	92	59.677	ENSPCOG00000012698	R3HDM1	87	59.677	Propithecus_coquereli
ENSAPOG00000020850	r3hdm1	97	42.169	ENSPVAG00000006098	R3HDM1	89	41.865	Pteropus_vampyrus
ENSAPOG00000020850	r3hdm1	83	73.529	ENSPNAG00000013952	r3hdm1	78	73.529	Pygocentrus_nattereri
ENSAPOG00000020850	r3hdm1	83	72.549	ENSPNAG00000005436	R3HDM1	91	71.569	Pygocentrus_nattereri
ENSAPOG00000020850	r3hdm1	97	47.822	ENSRNOG00000004099	R3hdm1	89	48.614	Rattus_norvegicus
ENSAPOG00000020850	r3hdm1	90	58.126	ENSRBIG00000033317	R3HDM1	87	71.942	Rhinopithecus_bieti
ENSAPOG00000020850	r3hdm1	90	59.656	ENSRROG00000034534	R3HDM1	88	63.467	Rhinopithecus_roxellana
ENSAPOG00000020850	r3hdm1	92	58.088	ENSSBOG00000020389	R3HDM1	88	63.200	Saimiri_boliviensis_boliviensis
ENSAPOG00000020850	r3hdm1	97	46.950	ENSSHAG00000016999	R3HDM1	89	47.335	Sarcophilus_harrisii
ENSAPOG00000020850	r3hdm1	84	72.611	ENSSFOG00015014134	r3hdm1	89	64.792	Scleropages_formosus
ENSAPOG00000020850	r3hdm1	97	48.341	ENSSFOG00015019851	-	94	53.936	Scleropages_formosus
ENSAPOG00000020850	r3hdm1	97	80.348	ENSSMAG00000001669	r3hdm1	90	80.348	Scophthalmus_maximus
ENSAPOG00000020850	r3hdm1	96	84.653	ENSSDUG00000010749	r3hdm1	100	85.142	Seriola_dumerili
ENSAPOG00000020850	r3hdm1	97	86.148	ENSSLDG00000004499	r3hdm1	90	86.528	Seriola_lalandi_dorsalis
ENSAPOG00000020850	r3hdm1	52	53.420	ENSSARG00000000352	-	52	54.397	Sorex_araneus
ENSAPOG00000020850	r3hdm1	97	47.124	ENSSPUG00000004167	R3HDM1	89	48.052	Sphenodon_punctatus
ENSAPOG00000020850	r3hdm1	96	91.635	ENSSPAG00000004648	r3hdm1	100	91.635	Stegastes_partitus
ENSAPOG00000020850	r3hdm1	92	60.215	ENSSSCG00000015692	R3HDM1	88	60.215	Sus_scrofa
ENSAPOG00000020850	r3hdm1	93	48.602	ENSTGUG00000011750	R3HDM1	89	47.637	Taeniopygia_guttata
ENSAPOG00000020850	r3hdm1	96	78.634	ENSTRUG00000011654	r3hdm1	99	78.537	Takifugu_rubripes
ENSAPOG00000020850	r3hdm1	95	70.459	ENSTNIG00000010362	r3hdm1	99	70.841	Tetraodon_nigroviridis
ENSAPOG00000020850	r3hdm1	85	55.556	ENSTTRG00000003935	R3HDM1	85	49.206	Tursiops_truncatus
ENSAPOG00000020850	r3hdm1	71	64.000	ENSUAMG00000024806	R3HDM1	99	57.630	Ursus_americanus
ENSAPOG00000020850	r3hdm1	92	63.200	ENSUMAG00000005552	R3HDM1	88	63.200	Ursus_maritimus
ENSAPOG00000020850	r3hdm1	85	47.783	ENSVPAG00000007333	R3HDM1	74	47.630	Vicugna_pacos
ENSAPOG00000020850	r3hdm1	92	63.200	ENSVVUG00000006457	R3HDM1	88	63.200	Vulpes_vulpes
ENSAPOG00000020850	r3hdm1	75	73.333	ENSXCOG00000017448	r3hdm1	93	74.088	Xiphophorus_couchianus
ENSAPOG00000020850	r3hdm1	96	82.122	ENSXMAG00000007885	r3hdm1	100	82.696	Xiphophorus_maculatus