EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAPOG00000022084 (Gene tree)
Gene ID: -
Gene Symbol: prdm1b
Alias: -
Full Name: PR domain zinc finger protein 1-like
Gene Type: protein_coding
Species: Acanthochromis_polyacanthus
Status: putative
Strand: Plus strand
Length: 21106 bases
Position: chrMVNR01001528.1:120697-141802
Accession: 110966044
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAPOP00000033473	zf-C2H2	PF00096.26	1.8e-16	1	3
ENSAPOP00000033473	zf-C2H2	PF00096.26	1.8e-16	2	3
ENSAPOP00000033473	zf-C2H2	PF00096.26	1.8e-16	3	3
ENSAPOP00000033473	zf-met	PF12874.7	1.7e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAPOT00000028422	-	1308	XM_022215277	ENSAPOP00000018735	436 (aa)	XP_022070969	-
ENSAPOT00000028368	-	1371	-	ENSAPOP00000033473	456 (aa)	-	-

Gene Model

Click here to download ENSAPOG00000022084's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAPOG00000022084's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAPOG00000022084	prdm1b	67	44.715	ENSAPOG00000001563	-	84	45.600
ENSAPOG00000022084	prdm1b	61	43.165	ENSAPOG00000021991	-	65	43.165
ENSAPOG00000022084	prdm1b	62	43.810	ENSAPOG00000005097	znf236	58	46.914
ENSAPOG00000022084	prdm1b	54	42.308	ENSAPOG00000013499	-	83	42.308

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAPOG00000022084	prdm1b	84	77.889	ENSACIG00000014426	prdm1b	62	78.075	Amphilophus_citrinellus
ENSAPOG00000022084	prdm1b	88	91.584	ENSAOCG00000002230	prdm1b	70	91.940	Amphiprion_ocellaris
ENSAPOG00000022084	prdm1b	88	92.327	ENSAPEG00000019826	prdm1b	69	91.337	Amphiprion_percula
ENSAPOG00000022084	prdm1b	95	72.331	ENSATEG00000006924	prdm1b	73	71.895	Anabas_testudineus
ENSAPOG00000022084	prdm1b	84	78.643	ENSACLG00000005487	prdm1b	62	76.633	Astatotilapia_calliptera
ENSAPOG00000022084	prdm1b	84	76.263	ENSCVAG00000016746	prdm1b	65	75.758	Cyprinodon_variegatus
ENSAPOG00000022084	prdm1b	93	73.349	ENSFHEG00000019848	prdm1b	72	72.146	Fundulus_heteroclitus
ENSAPOG00000022084	prdm1b	97	70.282	ENSGAFG00000016191	prdm1b	73	68.547	Gambusia_affinis
ENSAPOG00000022084	prdm1b	85	73.153	ENSGACG00000002716	prdm1b	54	75.000	Gasterosteus_aculeatus
ENSAPOG00000022084	prdm1b	92	73.121	ENSHBUG00000001475	prdm1b	73	71.526	Haplochromis_burtoni
ENSAPOG00000022084	prdm1b	89	71.838	ENSHCOG00000003617	prdm1b	67	71.292	Hippocampus_comes
ENSAPOG00000022084	prdm1b	82	56.995	ENSIPUG00000013740	prdm1b	58	56.267	Ictalurus_punctatus
ENSAPOG00000022084	prdm1b	92	68.779	ENSKMAG00000011218	prdm1b	69	67.840	Kryptolebias_marmoratus
ENSAPOG00000022084	prdm1b	95	73.203	ENSLBEG00000020955	prdm1b	73	71.895	Labrus_bergylta
ENSAPOG00000022084	prdm1b	80	60.988	ENSLOCG00000004978	prdm1b	50	59.102	Lepisosteus_oculatus
ENSAPOG00000022084	prdm1b	84	78.643	ENSMZEG00005026361	prdm1b	62	76.633	Maylandia_zebra
ENSAPOG00000022084	prdm1b	93	73.756	ENSMMOG00000013458	prdm1b	73	71.041	Mola_mola
ENSAPOG00000022084	prdm1b	93	68.764	ENSMALG00000011410	prdm1b	73	68.090	Monopterus_albus
ENSAPOG00000022084	prdm1b	99	65.532	ENSONIG00000013583	prdm1b	63	64.894	Oreochromis_niloticus
ENSAPOG00000022084	prdm1b	84	76.093	ENSORLG00000010025	prdm1b	66	72.087	Oryzias_latipes
ENSAPOG00000022084	prdm1b	92	72.512	ENSORLG00015009022	prdm1b	67	71.564	Oryzias_latipes_hsok
ENSAPOG00000022084	prdm1b	75	76.638	ENSPFOG00000003103	prdm1b	53	76.301	Poecilia_formosa
ENSAPOG00000022084	prdm1b	93	72.336	ENSPLAG00000018491	prdm1b	70	70.295	Poecilia_latipinna
ENSAPOG00000022084	prdm1b	96	71.711	ENSPMEG00000007869	prdm1b	73	70.175	Poecilia_mexicana
ENSAPOG00000022084	prdm1b	93	72.769	ENSPREG00000011327	prdm1b	69	72.082	Poecilia_reticulata
ENSAPOG00000022084	prdm1b	80	65.753	ENSSFOG00015021896	prdm1b	52	65.753	Scleropages_formosus
ENSAPOG00000022084	prdm1b	95	70.614	ENSSMAG00000020467	prdm1b	76	69.737	Scophthalmus_maximus
ENSAPOG00000022084	prdm1b	95	74.236	ENSSDUG00000020610	prdm1b	73	73.144	Seriola_dumerili
ENSAPOG00000022084	prdm1b	95	74.236	ENSSLDG00000021973	prdm1b	72	74.550	Seriola_lalandi_dorsalis
ENSAPOG00000022084	prdm1b	88	84.185	ENSSPAG00000000803	prdm1b	68	85.149	Stegastes_partitus
ENSAPOG00000022084	prdm1b	89	73.571	ENSXCOG00000018920	prdm1b	61	72.182	Xiphophorus_couchianus
ENSAPOG00000022084	prdm1b	89	73.223	ENSXMAG00000016765	prdm1b	69	72.182	Xiphophorus_maculatus