EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAPOG00000023399 (Gene tree)
Gene ID: 110951281
Gene Symbol: -
Alias: -
Full Name: serine/arginine-rich splicing factor 6-like
Gene Type: protein_coding
Species: Acanthochromis_polyacanthus
Status: putative
Strand: Plus strand
Length: 7634 bases
Position: chrMVNR01000187.1:592815-600448
Accession: 110951281
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAPOP00000019891	RRM_1	PF00076.22	1e-31	1	2
ENSAPOP00000019891	RRM_1	PF00076.22	1e-31	2	2
ENSAPOP00000019891	RRM_3	PF08777.11	1.6e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAPOT00000029886	-	891	XM_022194260	ENSAPOP00000019891	296 (aa)	XP_022049952	-

Gene Model

Click here to download ENSAPOG00000023399's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAPOG00000023399's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAPOG00000023399	-	59	63.333	ENSAPOG00000008642	srsf5b	62	65.000
ENSAPOG00000023399	-	56	42.442	ENSAPOG00000013728	srsf9	74	42.553
ENSAPOG00000023399	-	55	44.706	ENSAPOG00000008542	-	67	44.706
ENSAPOG00000023399	-	75	53.070	ENSAPOG00000017395	srsf5a	61	67.222
ENSAPOG00000023399	-	55	43.195	ENSAPOG00000002748	-	65	43.787

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAPOG00000023399	-	84	67.041	ENSG00000116350	SRSF4	73	78.788	Homo_sapiens
ENSAPOG00000023399	-	60	74.719	ENSACIG00000018649	srsf4	90	75.000	Amphilophus_citrinellus
ENSAPOG00000023399	-	55	74.390	ENSAOCG00000005997	srsf4	92	76.220	Amphiprion_ocellaris
ENSAPOG00000023399	-	59	75.281	ENSATEG00000005680	srsf4	59	75.281	Anabas_testudineus
ENSAPOG00000023399	-	90	69.930	ENSACLG00000021269	-	81	68.581	Astatotilapia_calliptera
ENSAPOG00000023399	-	60	74.719	ENSACLG00000003395	srsf4	72	75.862	Astatotilapia_calliptera
ENSAPOG00000023399	-	86	58.268	ENSAMXG00000034811	srsf4	81	73.494	Astyanax_mexicanus
ENSAPOG00000023399	-	59	48.990	WBGene00004698	rsp-1	97	48.252	Caenorhabditis_elegans
ENSAPOG00000023399	-	59	53.514	ENSCING00000011362	-	65	56.216	Ciona_intestinalis
ENSAPOG00000023399	-	99	41.587	ENSCING00000024718	-	56	55.897	Ciona_intestinalis
ENSAPOG00000023399	-	60	54.545	ENSCING00000012370	-	68	57.214	Ciona_intestinalis
ENSAPOG00000023399	-	59	52.880	ENSCING00000020631	-	79	54.974	Ciona_intestinalis
ENSAPOG00000023399	-	59	61.364	ENSCSAVG00000002581	-	70	59.669	Ciona_savignyi
ENSAPOG00000023399	-	60	71.429	ENSDARG00000105293	srsf4	80	74.118	Danio_rerio
ENSAPOG00000023399	-	59	68.132	FBgn0004587	B52	96	64.122	Drosophila_melanogaster
ENSAPOG00000023399	-	54	59.146	ENSEBUG00000003129	srsf4	69	59.146	Eptatretus_burgeri
ENSAPOG00000023399	-	72	55.607	ENSEBUG00000001681	srsf4	67	61.111	Eptatretus_burgeri
ENSAPOG00000023399	-	87	47.419	ENSELUG00000017551	srsf4	93	61.538	Esox_lucius
ENSAPOG00000023399	-	60	76.404	ENSFHEG00000007472	srsf4	90	76.190	Fundulus_heteroclitus
ENSAPOG00000023399	-	60	69.663	ENSGMOG00000012906	srsf4	73	58.091	Gadus_morhua
ENSAPOG00000023399	-	87	54.789	ENSGAFG00000018496	srsf4	65	68.852	Gambusia_affinis
ENSAPOG00000023399	-	60	74.860	ENSGACG00000002389	srsf4	88	56.643	Gasterosteus_aculeatus
ENSAPOG00000023399	-	60	84.530	ENSHBUG00000011326	-	51	85.635	Haplochromis_burtoni
ENSAPOG00000023399	-	79	59.833	ENSHCOG00000012540	srsf4	67	73.077	Hippocampus_comes
ENSAPOG00000023399	-	90	49.624	ENSKMAG00000013631	srsf4	95	56.207	Kryptolebias_marmoratus
ENSAPOG00000023399	-	60	76.243	ENSMAMG00000004888	srsf4	68	78.090	Mastacembelus_armatus
ENSAPOG00000023399	-	60	74.719	ENSMZEG00005026275	srsf4	72	75.862	Maylandia_zebra
ENSAPOG00000023399	-	73	78.261	ENSMMOG00000013653	srsf4	65	71.910	Mola_mola
ENSAPOG00000023399	-	60	80.899	ENSMODG00000011052	SRSF4	55	80.899	Monodelphis_domestica
ENSAPOG00000023399	-	91	52.581	ENSMALG00000013392	srsf4	66	75.556	Monopterus_albus
ENSAPOG00000023399	-	61	76.374	ENSNLEG00000030787	-	62	76.667	Nomascus_leucogenys
ENSAPOG00000023399	-	60	75.281	ENSORLG00020016052	srsf4	65	78.771	Oryzias_latipes_hni
ENSAPOG00000023399	-	60	71.910	ENSORLG00015007566	srsf4	70	78.771	Oryzias_latipes_hsok
ENSAPOG00000023399	-	60	71.910	ENSOMEG00000005541	srsf4	50	78.771	Oryzias_melastigma
ENSAPOG00000023399	-	70	79.710	ENSPMGG00000013436	srsf4	95	71.654	Periophthalmus_magnuspinnatus
ENSAPOG00000023399	-	60	63.536	ENSPMAG00000009397	srsf4	68	63.388	Petromyzon_marinus
ENSAPOG00000023399	-	97	52.921	ENSPLAG00000008812	srsf4	63	68.132	Poecilia_latipinna
ENSAPOG00000023399	-	60	76.374	ENSPMEG00000023638	srsf4	84	59.107	Poecilia_mexicana
ENSAPOG00000023399	-	60	78.090	ENSPREG00000009639	srsf4	50	78.090	Poecilia_reticulata
ENSAPOG00000023399	-	60	75.281	ENSPNAG00000023844	srsf4	53	74.860	Pygocentrus_nattereri
ENSAPOG00000023399	-	50	81.633	ENSSHAG00000012407	SRSF4	50	81.633	Sarcophilus_harrisii
ENSAPOG00000023399	-	60	73.034	ENSSFOG00015020292	srsf4	82	69.231	Scleropages_formosus
ENSAPOG00000023399	-	60	76.243	ENSSMAG00000001707	srsf4	50	76.243	Scophthalmus_maximus
ENSAPOG00000023399	-	60	75.281	ENSSDUG00000007387	srsf4	71	56.170	Seriola_dumerili
ENSAPOG00000023399	-	60	63.128	ENSSLDG00000009745	srsf4	60	63.128	Seriola_lalandi_dorsalis
ENSAPOG00000023399	-	60	76.536	ENSSPAG00000014538	srsf4	83	73.984	Stegastes_partitus
ENSAPOG00000023399	-	60	74.157	ENSTRUG00000011891	srsf4	62	71.204	Takifugu_rubripes
ENSAPOG00000023399	-	60	76.374	ENSXCOG00000018826	srsf4	89	71.667	Xiphophorus_couchianus