EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAPOG00000023773 (Gene tree)
Gene ID: 110950706
Gene Symbol: upf1
Alias: rent1|wu:fi40f07|wu:fj48a01|zgc:55472
Full Name: regulator of nonsense transcripts 1-like
Gene Type: protein_coding
Species: Acanthochromis_polyacanthus
Status: putative
Strand: Plus strand
Length: 15685 bases
Position: chrMVNR01000159.1:386250-401934
Accession: 110950706
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAPOP00000034454	UPF1_Zn_bind	PF09416.10	1.9e-75	1	1
ENSAPOP00000020196	UPF1_Zn_bind	PF09416.10	2e-75	1	1
ENSAPOP00000034454	ResIII	PF04851.15	2.4e-05	1	1
ENSAPOP00000020196	ResIII	PF04851.15	2.5e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAPOT00000030267	-	7156	XM_022193448	ENSAPOP00000020196	1113 (aa)	XP_022049140	UPI000B8F84DF
ENSAPOT00000030237	-	3279	-	ENSAPOP00000034454	1092 (aa)	-	-

Gene Model

Click here to download ENSAPOG00000023773's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAPOG00000023773's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAPOG00000023773	upf1	100	93.309	ENSAPOG00000010916	-	100	93.309

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAPOG00000023773	upf1	100	91.281	ENSG00000005007	UPF1	100	91.192	Homo_sapiens
ENSAPOG00000023773	upf1	100	90.798	ENSAMEG00000011474	UPF1	100	90.708	Ailuropoda_melanoleuca
ENSAPOG00000023773	upf1	94	92.507	ENSACIG00000010985	-	100	93.003	Amphilophus_citrinellus
ENSAPOG00000023773	upf1	100	97.574	ENSACIG00000019949	upf1	100	97.574	Amphilophus_citrinellus
ENSAPOG00000023773	upf1	100	99.910	ENSAOCG00000018519	upf1	100	99.910	Amphiprion_ocellaris
ENSAPOG00000023773	upf1	100	93.309	ENSAOCG00000006352	-	100	93.309	Amphiprion_ocellaris
ENSAPOG00000023773	upf1	100	99.910	ENSAPEG00000016344	upf1	100	99.910	Amphiprion_percula
ENSAPOG00000023773	upf1	100	93.309	ENSAPEG00000006292	-	100	93.309	Amphiprion_percula
ENSAPOG00000023773	upf1	100	97.939	ENSATEG00000017867	upf1	100	97.939	Anabas_testudineus
ENSAPOG00000023773	upf1	100	93.309	ENSATEG00000016606	-	100	93.309	Anabas_testudineus
ENSAPOG00000023773	upf1	95	92.918	ENSAPLG00000009175	UPF1	100	92.729	Anas_platyrhynchos
ENSAPOG00000023773	upf1	95	91.193	ENSANAG00000024107	UPF1	95	91.004	Aotus_nancymaae
ENSAPOG00000023773	upf1	100	97.484	ENSACLG00000007181	upf1	100	97.484	Astatotilapia_calliptera
ENSAPOG00000023773	upf1	100	93.128	ENSACLG00000022630	-	100	93.128	Astatotilapia_calliptera
ENSAPOG00000023773	upf1	100	94.389	ENSAMXG00000042187	upf1	100	94.389	Astyanax_mexicanus
ENSAPOG00000023773	upf1	100	90.814	ENSBTAG00000020922	UPF1	100	90.724	Bos_taurus
ENSAPOG00000023773	upf1	82	54.051	WBGene00004880	smg-2	83	54.353	Caenorhabditis_elegans
ENSAPOG00000023773	upf1	100	90.401	ENSCJAG00000019627	UPF1	100	90.308	Callithrix_jacchus
ENSAPOG00000023773	upf1	100	90.576	ENSCAFG00000014578	UPF1	100	90.485	Canis_familiaris
ENSAPOG00000023773	upf1	100	91.459	ENSCAFG00020012347	UPF1	100	91.370	Canis_lupus_dingo
ENSAPOG00000023773	upf1	100	91.704	ENSCHIG00000011018	UPF1	100	91.615	Capra_hircus
ENSAPOG00000023773	upf1	95	92.614	ENSTSYG00000008877	UPF1	98	92.424	Carlito_syrichta
ENSAPOG00000023773	upf1	96	91.854	ENSCAPG00000005758	UPF1	95	92.235	Cavia_aperea
ENSAPOG00000023773	upf1	100	91.667	ENSCPOG00000025463	UPF1	100	91.398	Cavia_porcellus
ENSAPOG00000023773	upf1	100	91.281	ENSCCAG00000032175	UPF1	100	91.192	Cebus_capucinus
ENSAPOG00000023773	upf1	94	92.586	ENSCATG00000040306	UPF1	98	92.235	Cercocebus_atys
ENSAPOG00000023773	upf1	95	92.614	ENSCLAG00000004037	UPF1	99	92.424	Chinchilla_lanigera
ENSAPOG00000023773	upf1	100	91.281	ENSCSAG00000005276	UPF1	100	91.192	Chlorocebus_sabaeus
ENSAPOG00000023773	upf1	100	91.860	ENSCPBG00000012513	UPF1	100	91.682	Chrysemys_picta_bellii
ENSAPOG00000023773	upf1	78	79.463	ENSCING00000021399	-	99	79.577	Ciona_intestinalis
ENSAPOG00000023773	upf1	99	73.153	ENSCSAVG00000006533	-	99	73.333	Ciona_savignyi
ENSAPOG00000023773	upf1	95	92.519	ENSCANG00000029819	UPF1	97	92.330	Colobus_angolensis_palliatus
ENSAPOG00000023773	upf1	100	91.510	ENSCGRG00001021067	Upf1	100	91.421	Cricetulus_griseus_chok1gshd
ENSAPOG00000023773	upf1	95	92.330	ENSCGRG00000013480	Upf1	98	92.140	Cricetulus_griseus_crigri
ENSAPOG00000023773	upf1	100	93.472	ENSCSEG00000016159	-	100	93.291	Cynoglossus_semilaevis
ENSAPOG00000023773	upf1	100	91.316	ENSCSEG00000017239	upf1	100	91.133	Cynoglossus_semilaevis
ENSAPOG00000023773	upf1	100	92.676	ENSCVAG00000010561	upf1	100	92.676	Cyprinodon_variegatus
ENSAPOG00000023773	upf1	100	94.208	ENSDARG00000016302	upf1	100	94.299	Danio_rerio
ENSAPOG00000023773	upf1	95	90.161	ENSDORG00000009984	Upf1	95	89.972	Dipodomys_ordii
ENSAPOG00000023773	upf1	86	72.187	FBgn0030354	Upf1	82	70.872	Drosophila_melanogaster
ENSAPOG00000023773	upf1	55	87.086	ENSEBUG00000010069	upf1	96	87.417	Eptatretus_burgeri
ENSAPOG00000023773	upf1	100	91.704	ENSEASG00005006549	UPF1	100	91.615	Equus_asinus_asinus
ENSAPOG00000023773	upf1	100	91.704	ENSECAG00000010639	UPF1	100	91.615	Equus_caballus
ENSAPOG00000023773	upf1	100	94.434	ENSELUG00000020917	upf1	100	93.268	Esox_lucius
ENSAPOG00000023773	upf1	100	92.589	ENSELUG00000012916	-	100	92.266	Esox_lucius
ENSAPOG00000023773	upf1	100	90.576	ENSFCAG00000009757	UPF1	100	90.485	Felis_catus
ENSAPOG00000023773	upf1	95	93.441	ENSFALG00000009312	UPF1	96	93.251	Ficedula_albicollis
ENSAPOG00000023773	upf1	95	92.519	ENSFDAG00000014816	UPF1	99	92.330	Fukomys_damarensis
ENSAPOG00000023773	upf1	100	93.744	ENSFHEG00000006428	upf1	100	93.119	Fundulus_heteroclitus
ENSAPOG00000023773	upf1	87	94.763	ENSFHEG00000016276	-	96	94.763	Fundulus_heteroclitus
ENSAPOG00000023773	upf1	100	92.093	ENSGMOG00000007541	upf1	100	92.004	Gadus_morhua
ENSAPOG00000023773	upf1	100	91.622	ENSGALG00000003220	UPF1	100	91.355	Gallus_gallus
ENSAPOG00000023773	upf1	100	93.103	ENSGAFG00000004831	upf1	100	93.103	Gambusia_affinis
ENSAPOG00000023773	upf1	64	95.994	ENSGAFG00000015443	-	85	96.686	Gambusia_affinis
ENSAPOG00000023773	upf1	100	92.363	ENSGAGG00000022217	UPF1	100	92.183	Gopherus_agassizii
ENSAPOG00000023773	upf1	95	93.493	ENSGGOG00000002608	UPF1	99	93.301	Gorilla_gorilla
ENSAPOG00000023773	upf1	90	97.436	ENSHBUG00000014694	upf1	100	97.436	Haplochromis_burtoni
ENSAPOG00000023773	upf1	87	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSAPOG00000023773	upf1	100	90.396	ENSHGLG00000010900	UPF1	100	90.220	Heterocephalus_glaber_female
ENSAPOG00000023773	upf1	95	90.814	ENSHGLG00100005904	UPF1	96	90.530	Heterocephalus_glaber_male
ENSAPOG00000023773	upf1	100	92.780	ENSHCOG00000008918	upf1	100	92.851	Hippocampus_comes
ENSAPOG00000023773	upf1	100	94.480	ENSIPUG00000005108	UPF1	100	94.480	Ictalurus_punctatus
ENSAPOG00000023773	upf1	100	91.281	ENSSTOG00000009196	UPF1	100	91.192	Ictidomys_tridecemlineatus
ENSAPOG00000023773	upf1	100	90.869	ENSJJAG00000023151	Upf1	100	90.691	Jaculus_jaculus
ENSAPOG00000023773	upf1	100	92.857	ENSKMAG00000004962	upf1	100	92.857	Kryptolebias_marmoratus
ENSAPOG00000023773	upf1	100	97.934	ENSLBEG00000014862	upf1	100	97.934	Labrus_bergylta
ENSAPOG00000023773	upf1	100	93.044	ENSLBEG00000027848	-	100	93.044	Labrus_bergylta
ENSAPOG00000023773	upf1	64	92.837	ENSLACG00000008482	UPF1	100	92.165	Latimeria_chalumnae
ENSAPOG00000023773	upf1	100	93.937	ENSLOCG00000002072	upf1	100	93.937	Lepisosteus_oculatus
ENSAPOG00000023773	upf1	100	90.468	ENSLAFG00000014963	UPF1	100	90.468	Loxodonta_africana
ENSAPOG00000023773	upf1	100	91.038	ENSMFAG00000037748	UPF1	100	90.949	Macaca_fascicularis
ENSAPOG00000023773	upf1	100	90.798	ENSMMUG00000023286	UPF1	100	90.708	Macaca_mulatta
ENSAPOG00000023773	upf1	100	91.038	ENSMNEG00000000046	UPF1	100	90.949	Macaca_nemestrina
ENSAPOG00000023773	upf1	95	92.519	ENSMLEG00000028404	UPF1	99	92.330	Mandrillus_leucophaeus
ENSAPOG00000023773	upf1	100	92.927	ENSMAMG00000006231	-	100	93.044	Mastacembelus_armatus
ENSAPOG00000023773	upf1	100	98.297	ENSMAMG00000006229	upf1	100	98.297	Mastacembelus_armatus
ENSAPOG00000023773	upf1	100	93.128	ENSMZEG00005016386	-	100	93.128	Maylandia_zebra
ENSAPOG00000023773	upf1	100	98.562	ENSMZEG00005003489	upf1	100	98.562	Maylandia_zebra
ENSAPOG00000023773	upf1	95	92.431	ENSMGAG00000004745	UPF1	100	92.242	Meleagris_gallopavo
ENSAPOG00000023773	upf1	95	92.221	ENSMAUG00000011398	Upf1	95	92.140	Mesocricetus_auratus
ENSAPOG00000023773	upf1	100	91.370	ENSMICG00000001659	UPF1	100	91.281	Microcebus_murinus
ENSAPOG00000023773	upf1	100	90.619	ENSMOCG00000005699	Upf1	100	90.619	Microtus_ochrogaster
ENSAPOG00000023773	upf1	95	90.476	ENSMMOG00000007537	-	99	90.476	Mola_mola
ENSAPOG00000023773	upf1	100	96.350	ENSMMOG00000007881	upf1	100	96.350	Mola_mola
ENSAPOG00000023773	upf1	100	90.513	ENSMODG00000003689	UPF1	100	90.510	Monodelphis_domestica
ENSAPOG00000023773	upf1	100	91.892	ENSMALG00000018100	-	100	91.892	Monopterus_albus
ENSAPOG00000023773	upf1	100	97.436	ENSMALG00000000144	upf1	100	97.436	Monopterus_albus
ENSAPOG00000023773	upf1	100	91.510	MGP_CAROLIEiJ_G0031142	Upf1	100	91.332	Mus_caroli
ENSAPOG00000023773	upf1	100	91.510	ENSMUSG00000058301	Upf1	100	91.332	Mus_musculus
ENSAPOG00000023773	upf1	100	91.510	MGP_PahariEiJ_G0021607	Upf1	100	91.332	Mus_pahari
ENSAPOG00000023773	upf1	100	91.510	MGP_SPRETEiJ_G0032260	Upf1	100	91.332	Mus_spretus
ENSAPOG00000023773	upf1	100	91.459	ENSMPUG00000015516	UPF1	100	91.370	Mustela_putorius_furo
ENSAPOG00000023773	upf1	99	91.339	ENSMLUG00000012122	UPF1	99	91.250	Myotis_lucifugus
ENSAPOG00000023773	upf1	100	90.203	ENSNGAG00000024107	Upf1	100	90.115	Nannospalax_galili
ENSAPOG00000023773	upf1	100	95.418	ENSNBRG00000000670	upf1	100	95.418	Neolamprologus_brichardi
ENSAPOG00000023773	upf1	100	89.712	ENSNBRG00000022069	-	100	92.166	Neolamprologus_brichardi
ENSAPOG00000023773	upf1	95	86.879	ENSNLEG00000006062	UPF1	99	86.648	Nomascus_leucogenys
ENSAPOG00000023773	upf1	83	86.882	ENSMEUG00000014146	-	83	86.408	Notamacropus_eugenii
ENSAPOG00000023773	upf1	95	86.890	ENSOPRG00000014018	UPF1	99	86.312	Ochotona_princeps
ENSAPOG00000023773	upf1	100	91.659	ENSODEG00000012426	UPF1	100	91.390	Octodon_degus
ENSAPOG00000023773	upf1	100	98.832	ENSONIG00000010452	upf1	100	98.832	Oreochromis_niloticus
ENSAPOG00000023773	upf1	100	93.128	ENSONIG00000012729	-	100	93.128	Oreochromis_niloticus
ENSAPOG00000023773	upf1	100	90.724	ENSOANG00000004568	UPF1	100	90.459	Ornithorhynchus_anatinus
ENSAPOG00000023773	upf1	100	92.832	ENSORLG00000008453	upf1	100	92.405	Oryzias_latipes
ENSAPOG00000023773	upf1	100	92.748	ENSORLG00020014758	upf1	100	92.322	Oryzias_latipes_hni
ENSAPOG00000023773	upf1	100	92.748	ENSORLG00015010165	upf1	100	92.322	Oryzias_latipes_hsok
ENSAPOG00000023773	upf1	100	93.190	ENSOMEG00000003665	upf1	100	92.676	Oryzias_melastigma
ENSAPOG00000023773	upf1	100	91.370	ENSOGAG00000012866	UPF1	100	91.281	Otolemur_garnettii
ENSAPOG00000023773	upf1	96	89.655	ENSOARG00000010739	UPF1	100	89.459	Ovis_aries
ENSAPOG00000023773	upf1	95	92.519	ENSPPAG00000043884	UPF1	96	92.330	Pan_paniscus
ENSAPOG00000023773	upf1	100	90.576	ENSPPRG00000023470	UPF1	100	90.485	Panthera_pardus
ENSAPOG00000023773	upf1	95	91.500	ENSPTIG00000010159	UPF1	99	91.309	Panthera_tigris_altaica
ENSAPOG00000023773	upf1	100	91.038	ENSPTRG00000010721	UPF1	100	90.949	Pan_troglodytes
ENSAPOG00000023773	upf1	100	91.038	ENSPANG00000008847	UPF1	100	90.949	Papio_anubis
ENSAPOG00000023773	upf1	92	95.912	ENSPKIG00000006069	upf1	97	95.545	Paramormyrops_kingsleyae
ENSAPOG00000023773	upf1	70	91.805	ENSPSIG00000009491	UPF1	100	91.558	Pelodiscus_sinensis
ENSAPOG00000023773	upf1	100	92.954	ENSPMGG00000017327	upf1	100	92.954	Periophthalmus_magnuspinnatus
ENSAPOG00000023773	upf1	100	90.619	ENSPEMG00000001085	Upf1	100	90.531	Peromyscus_maniculatus_bairdii
ENSAPOG00000023773	upf1	100	86.999	ENSPMAG00000001206	upf1	100	86.859	Petromyzon_marinus
ENSAPOG00000023773	upf1	100	91.897	ENSPCIG00000006156	UPF1	100	91.808	Phascolarctos_cinereus
ENSAPOG00000023773	upf1	100	95.238	ENSPLAG00000018155	-	100	95.238	Poecilia_latipinna
ENSAPOG00000023773	upf1	100	93.103	ENSPLAG00000016232	-	100	93.194	Poecilia_latipinna
ENSAPOG00000023773	upf1	100	95.000	ENSPMEG00000011443	-	100	94.727	Poecilia_mexicana
ENSAPOG00000023773	upf1	100	93.019	ENSPMEG00000016319	-	100	93.110	Poecilia_mexicana
ENSAPOG00000023773	upf1	100	92.922	ENSPREG00000011247	-	100	93.013	Poecilia_reticulata
ENSAPOG00000023773	upf1	100	94.978	ENSPREG00000009940	upf1	100	94.978	Poecilia_reticulata
ENSAPOG00000023773	upf1	100	85.702	ENSPPYG00000009752	UPF1	100	85.702	Pongo_abelii
ENSAPOG00000023773	upf1	76	98.990	ENSPCAG00000012962	UPF1	76	98.990	Procavia_capensis
ENSAPOG00000023773	upf1	100	91.054	ENSPCOG00000023813	UPF1	100	90.965	Propithecus_coquereli
ENSAPOG00000023773	upf1	69	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSAPOG00000023773	upf1	100	93.128	ENSPNYG00000016731	-	100	93.128	Pundamilia_nyererei
ENSAPOG00000023773	upf1	100	98.562	ENSPNYG00000003694	upf1	100	98.562	Pundamilia_nyererei
ENSAPOG00000023773	upf1	100	94.480	ENSPNAG00000025614	upf1	100	94.480	Pygocentrus_nattereri
ENSAPOG00000023773	upf1	100	91.421	ENSRNOG00000020134	Upf1	100	91.332	Rattus_norvegicus
ENSAPOG00000023773	upf1	95	90.159	ENSRBIG00000013894	UPF1	98	93.137	Rhinopithecus_bieti
ENSAPOG00000023773	upf1	95	92.519	ENSRROG00000040935	UPF1	98	93.137	Rhinopithecus_roxellana
ENSAPOG00000023773	upf1	75	56.569	YMR080C	NAM7	84	56.916	Saccharomyces_cerevisiae
ENSAPOG00000023773	upf1	95	92.271	ENSSBOG00000023632	UPF1	96	92.083	Saimiri_boliviensis_boliviensis
ENSAPOG00000023773	upf1	95	92.817	ENSSHAG00000010499	UPF1	100	92.628	Sarcophilus_harrisii
ENSAPOG00000023773	upf1	100	93.852	ENSSFOG00015021095	upf1	100	94.033	Scleropages_formosus
ENSAPOG00000023773	upf1	100	92.927	ENSSMAG00000021018	-	100	93.044	Scophthalmus_maximus
ENSAPOG00000023773	upf1	100	97.038	ENSSMAG00000005055	upf1	100	97.038	Scophthalmus_maximus
ENSAPOG00000023773	upf1	100	93.315	ENSSDUG00000009629	-	100	93.315	Seriola_dumerili
ENSAPOG00000023773	upf1	100	98.746	ENSSDUG00000013320	upf1	100	98.746	Seriola_dumerili
ENSAPOG00000023773	upf1	100	97.939	ENSSLDG00000020868	upf1	100	97.939	Seriola_lalandi_dorsalis
ENSAPOG00000023773	upf1	100	93.315	ENSSLDG00000006878	-	100	93.315	Seriola_lalandi_dorsalis
ENSAPOG00000023773	upf1	100	91.928	ENSSPUG00000010538	UPF1	100	91.839	Sphenodon_punctatus
ENSAPOG00000023773	upf1	100	95.238	ENSSPAG00000000003	upf1	100	95.238	Stegastes_partitus
ENSAPOG00000023773	upf1	100	93.303	ENSSPAG00000011521	-	100	93.303	Stegastes_partitus
ENSAPOG00000023773	upf1	100	91.615	ENSSSCG00000039301	UPF1	99	93.314	Sus_scrofa
ENSAPOG00000023773	upf1	83	87.090	ENSTGUG00000001057	UPF1	100	91.124	Taeniopygia_guttata
ENSAPOG00000023773	upf1	100	96.140	ENSTRUG00000000150	upf1	100	96.140	Takifugu_rubripes
ENSAPOG00000023773	upf1	100	92.301	ENSTRUG00000005131	-	100	92.301	Takifugu_rubripes
ENSAPOG00000023773	upf1	100	87.986	ENSTTRG00000011544	UPF1	100	87.779	Tursiops_truncatus
ENSAPOG00000023773	upf1	100	91.459	ENSUAMG00000007093	UPF1	100	91.370	Ursus_americanus
ENSAPOG00000023773	upf1	95	93.601	ENSUMAG00000006652	UPF1	99	93.705	Ursus_maritimus
ENSAPOG00000023773	upf1	100	91.459	ENSVVUG00000007797	UPF1	100	91.370	Vulpes_vulpes
ENSAPOG00000023773	upf1	100	78.957	ENSXETG00000013602	upf1	100	78.421	Xenopus_tropicalis
ENSAPOG00000023773	upf1	94	93.411	ENSXCOG00000005764	-	99	93.411	Xiphophorus_couchianus
ENSAPOG00000023773	upf1	97	95.166	ENSXCOG00000015275	-	96	95.166	Xiphophorus_couchianus
ENSAPOG00000023773	upf1	100	93.110	ENSXMAG00000002540	-	100	93.110	Xiphophorus_maculatus
ENSAPOG00000023773	upf1	100	95.238	ENSXMAG00000001703	-	100	95.238	Xiphophorus_maculatus