EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAPOG00000023888 (Gene tree)
Gene ID: 110950732
Gene Symbol: ncl
Alias: fa12d03|wu:fa12d03|zgc:152810
Full Name: nucleolin
Gene Type: protein_coding
Species: Acanthochromis_polyacanthus
Status: putative
Strand: Plus strand
Length: 12075 bases
Position: chrMVNR01000010.1:155799-167873
Accession: 110950732
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAPOP00000034548	RRM_1	PF00076.22	1.9e-60	1	4
ENSAPOP00000034548	RRM_1	PF00076.22	1.9e-60	2	4
ENSAPOP00000034548	RRM_1	PF00076.22	1.9e-60	3	4
ENSAPOP00000034548	RRM_1	PF00076.22	1.9e-60	4	4
ENSAPOP00000020343	RRM_1	PF00076.22	2.7e-60	1	4
ENSAPOP00000020343	RRM_1	PF00076.22	2.7e-60	2	4
ENSAPOP00000020343	RRM_1	PF00076.22	2.7e-60	3	4
ENSAPOP00000020343	RRM_1	PF00076.22	2.7e-60	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAPOT00000030463	-	6430	-	ENSAPOP00000034548	664 (aa)	-	-
ENSAPOT00000035227	-	6577	XM_022193488	ENSAPOP00000020343	713 (aa)	XP_022049180	UPI000B908698

Gene Model

Click here to download ENSAPOG00000023888's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAPOG00000023888's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAPOG00000023888	ncl	52	31.429	ENSAPOG00000010842	pabpc1l	66	31.429
ENSAPOG00000023888	ncl	71	36.773	ENSAPOG00000014534	-	67	41.688

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAPOG00000023888	ncl	68	81.818	ENSACIG00000013234	ncl	62	81.600	Amphilophus_citrinellus
ENSAPOG00000023888	ncl	92	38.025	ENSAOCG00000014792	-	61	41.688	Amphiprion_ocellaris
ENSAPOG00000023888	ncl	100	97.071	ENSAOCG00000003133	ncl	100	97.071	Amphiprion_ocellaris
ENSAPOG00000023888	ncl	85	38.235	ENSAPEG00000013612	-	60	41.944	Amphiprion_percula
ENSAPOG00000023888	ncl	100	97.626	ENSAPEG00000002769	ncl	100	97.626	Amphiprion_percula
ENSAPOG00000023888	ncl	65	89.177	ENSATEG00000013343	ncl	60	89.286	Anabas_testudineus
ENSAPOG00000023888	ncl	70	44.033	ENSATEG00000019862	-	80	46.154	Anabas_testudineus
ENSAPOG00000023888	ncl	72	49.184	ENSAPLG00000012897	-	63	58.947	Anas_platyrhynchos
ENSAPOG00000023888	ncl	56	62.240	ENSACAG00000001006	-	52	62.141	Anolis_carolinensis
ENSAPOG00000023888	ncl	66	70.416	ENSAMXG00000001647	ncl	81	74.247	Astyanax_mexicanus
ENSAPOG00000023888	ncl	52	45.299	ENSCHIG00000012665	-	53	45.144	Capra_hircus
ENSAPOG00000023888	ncl	66	57.589	ENSCPBG00000016444	-	56	62.105	Chrysemys_picta_bellii
ENSAPOG00000023888	ncl	61	83.668	ENSCSEG00000015089	ncl	64	84.433	Cynoglossus_semilaevis
ENSAPOG00000023888	ncl	52	84.140	ENSCVAG00000012600	ncl	61	83.095	Cyprinodon_variegatus
ENSAPOG00000023888	ncl	59	76.359	ENSDARG00000002710	ncl	83	78.641	Danio_rerio
ENSAPOG00000023888	ncl	67	44.888	ENSDNOG00000031611	-	67	46.154	Dasypus_novemcinctus
ENSAPOG00000023888	ncl	60	47.907	ENSDNOG00000040257	-	71	47.086	Dasypus_novemcinctus
ENSAPOG00000023888	ncl	67	46.825	ENSEBUG00000016173	ncl	50	48.223	Eptatretus_burgeri
ENSAPOG00000023888	ncl	67	50.000	ENSELUG00000022826	-	87	50.743	Esox_lucius
ENSAPOG00000023888	ncl	70	71.058	ENSELUG00000006033	ncl	56	75.132	Esox_lucius
ENSAPOG00000023888	ncl	56	59.055	ENSFALG00000007592	-	54	59.055	Ficedula_albicollis
ENSAPOG00000023888	ncl	66	80.000	ENSFHEG00000018000	ncl	72	80.000	Fundulus_heteroclitus
ENSAPOG00000023888	ncl	71	69.816	ENSGMOG00000001341	ncl	59	69.519	Gadus_morhua
ENSAPOG00000023888	ncl	56	59.580	ENSGALG00000032930	NCL	55	59.259	Gallus_gallus
ENSAPOG00000023888	ncl	81	82.133	ENSGAFG00000015375	ncl	57	80.952	Gambusia_affinis
ENSAPOG00000023888	ncl	89	72.473	ENSGACG00000008970	ncl	61	82.133	Gasterosteus_aculeatus
ENSAPOG00000023888	ncl	82	56.763	ENSGAGG00000013330	-	56	62.533	Gopherus_agassizii
ENSAPOG00000023888	ncl	56	82.796	ENSHBUG00000006869	ncl	60	80.806	Haplochromis_burtoni
ENSAPOG00000023888	ncl	89	72.136	ENSHCOG00000010234	ncl	61	76.484	Hippocampus_comes
ENSAPOG00000023888	ncl	55	75.817	ENSIPUG00000024556	ncl	81	76.144	Ictalurus_punctatus
ENSAPOG00000023888	ncl	59	82.857	ENSKMAG00000008111	ncl	54	85.561	Kryptolebias_marmoratus
ENSAPOG00000023888	ncl	54	42.632	ENSLBEG00000014278	-	82	42.896	Labrus_bergylta
ENSAPOG00000023888	ncl	67	41.037	ENSLBEG00000007915	-	66	43.478	Labrus_bergylta
ENSAPOG00000023888	ncl	59	89.048	ENSLBEG00000019073	ncl	56	90.133	Labrus_bergylta
ENSAPOG00000023888	ncl	75	53.188	ENSLACG00000009328	ncl	64	60.422	Latimeria_chalumnae
ENSAPOG00000023888	ncl	60	51.970	ENSLACG00000022167	-	79	52.674	Latimeria_chalumnae
ENSAPOG00000023888	ncl	54	72.346	ENSLOCG00000004828	ncl	51	71.925	Lepisosteus_oculatus
ENSAPOG00000023888	ncl	89	81.604	ENSMAMG00000002086	ncl	51	90.024	Mastacembelus_armatus
ENSAPOG00000023888	ncl	62	40.185	ENSMAMG00000003479	-	69	40.933	Mastacembelus_armatus
ENSAPOG00000023888	ncl	59	81.429	ENSMZEG00005017438	ncl	60	81.429	Maylandia_zebra
ENSAPOG00000023888	ncl	55	58.760	ENSMGAG00000008147	-	87	58.696	Meleagris_gallopavo
ENSAPOG00000023888	ncl	52	90.523	ENSMMOG00000008553	ncl	84	90.523	Mola_mola
ENSAPOG00000023888	ncl	55	59.406	ENSMODG00000002470	-	56	59.406	Monodelphis_domestica
ENSAPOG00000023888	ncl	93	78.010	ENSMALG00000014827	ncl	65	86.869	Monopterus_albus
ENSAPOG00000023888	ncl	52	45.367	ENSMPUG00000001663	-	57	45.367	Mustela_putorius_furo
ENSAPOG00000023888	ncl	55	59.259	ENSMEUG00000012335	-	54	59.367	Notamacropus_eugenii
ENSAPOG00000023888	ncl	64	79.825	ENSONIG00000012508	ncl	64	80.000	Oreochromis_niloticus
ENSAPOG00000023888	ncl	57	39.842	ENSONIG00000010631	-	97	40.000	Oreochromis_niloticus
ENSAPOG00000023888	ncl	87	56.974	ENSOANG00000008732	-	62	61.735	Ornithorhynchus_anatinus
ENSAPOG00000023888	ncl	58	37.531	ENSORLG00000004645	-	83	38.642	Oryzias_latipes
ENSAPOG00000023888	ncl	54	87.151	ENSORLG00000007055	ncl	66	83.571	Oryzias_latipes
ENSAPOG00000023888	ncl	59	83.333	ENSORLG00020017943	ncl	60	85.067	Oryzias_latipes_hni
ENSAPOG00000023888	ncl	64	35.841	ENSORLG00020003497	-	74	38.642	Oryzias_latipes_hni
ENSAPOG00000023888	ncl	58	38.250	ENSORLG00015006613	-	77	38.642	Oryzias_latipes_hsok
ENSAPOG00000023888	ncl	59	80.714	ENSORLG00015013815	ncl	87	85.294	Oryzias_latipes_hsok
ENSAPOG00000023888	ncl	62	38.061	ENSOMEG00000015864	-	82	39.687	Oryzias_melastigma
ENSAPOG00000023888	ncl	67	85.333	ENSOMEG00000020786	ncl	68	83.135	Oryzias_melastigma
ENSAPOG00000023888	ncl	59	79.433	ENSPKIG00000002604	ncl	53	81.016	Paramormyrops_kingsleyae
ENSAPOG00000023888	ncl	65	56.795	ENSPSIG00000002361	-	54	61.458	Pelodiscus_sinensis
ENSAPOG00000023888	ncl	59	80.523	ENSPMGG00000004709	ncl	84	81.759	Periophthalmus_magnuspinnatus
ENSAPOG00000023888	ncl	55	58.486	ENSPCIG00000003293	-	53	58.442	Phascolarctos_cinereus
ENSAPOG00000023888	ncl	65	80.435	ENSPFOG00000024205	ncl	57	82.143	Poecilia_formosa
ENSAPOG00000023888	ncl	65	80.043	ENSPLAG00000024026	ncl	57	81.667	Poecilia_latipinna
ENSAPOG00000023888	ncl	65	80.217	ENSPMEG00000006000	ncl	57	81.905	Poecilia_mexicana
ENSAPOG00000023888	ncl	64	79.560	ENSPNYG00000020494	ncl	65	79.560	Pundamilia_nyererei
ENSAPOG00000023888	ncl	59	71.801	ENSPNAG00000006192	ncl	52	73.545	Pygocentrus_nattereri
ENSAPOG00000023888	ncl	52	53.826	ENSSHAG00000002702	-	59	53.806	Sarcophilus_harrisii
ENSAPOG00000023888	ncl	53	46.203	ENSSFOG00015013153	-	78	46.906	Scleropages_formosus
ENSAPOG00000023888	ncl	68	74.222	ENSSFOG00015008583	ncl	58	80.749	Scleropages_formosus
ENSAPOG00000023888	ncl	58	45.202	ENSSMAG00000007582	-	61	45.669	Scophthalmus_maximus
ENSAPOG00000023888	ncl	59	85.106	ENSSMAG00000021241	ncl	60	85.106	Scophthalmus_maximus
ENSAPOG00000023888	ncl	69	40.000	ENSSDUG00000010922	-	70	44.156	Seriola_dumerili
ENSAPOG00000023888	ncl	75	83.673	ENSSDUG00000006128	ncl	86	92.267	Seriola_dumerili
ENSAPOG00000023888	ncl	59	42.963	ENSSLDG00000015784	-	83	43.603	Seriola_lalandi_dorsalis
ENSAPOG00000023888	ncl	65	89.610	ENSSLDG00000002012	ncl	64	91.733	Seriola_lalandi_dorsalis
ENSAPOG00000023888	ncl	62	57.399	ENSSPUG00000008244	-	60	60.358	Sphenodon_punctatus
ENSAPOG00000023888	ncl	61	43.133	ENSSPAG00000001859	-	61	43.342	Stegastes_partitus
ENSAPOG00000023888	ncl	52	93.262	ENSSPAG00000002637	ncl	82	93.262	Stegastes_partitus
ENSAPOG00000023888	ncl	52	58.056	ENSTGUG00000009782	-	60	59.424	Taeniopygia_guttata
ENSAPOG00000023888	ncl	54	84.722	ENSTRUG00000008185	ncl	54	84.553	Takifugu_rubripes
ENSAPOG00000023888	ncl	56	83.957	ENSTNIG00000012186	ncl	62	84.000	Tetraodon_nigroviridis
ENSAPOG00000023888	ncl	56	62.334	ENSXETG00000009517	ncl	54	63.298	Xenopus_tropicalis
ENSAPOG00000023888	ncl	58	65.333	ENSXCOG00000003524	ncl	88	65.600	Xiphophorus_couchianus
ENSAPOG00000023888	ncl	57	40.769	ENSXCOG00000007369	-	89	41.316	Xiphophorus_couchianus
ENSAPOG00000023888	ncl	56	83.733	ENSXMAG00000005914	ncl	58	82.701	Xiphophorus_maculatus