EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSATEG00000000232 (Gene tree)
Gene ID: 113163671
Gene Symbol: r3hdm1
Alias: WITHDRAWN: wu:fj35h04|fj35h04|fk85b04|id:ibd5043|sb:eu460|si:ch73-60i13.2|wu:fj35h04|wu:fk85b04
Full Name: R3H domain containing 1
Gene Type: protein_coding
Species: Anabas_testudineus
Status: putative
Strand: Minus strand
Length: 43730 bases
Position: chrOOHO01000004.1:8045628-8089357
Accession: ZDB-GENE-030131-7119
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSATEP00000000265	R3H	PF01424.22	1.4e-12	1	1
ENSATEP00000000256	R3H	PF01424.22	1.5e-12	1	1
ENSATEP00000000277	R3H	PF01424.22	1.5e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSATET00000000266	-	4813	-	ENSATEP00000000256	1002 (aa)	-	-
ENSATET00000000275	-	4687	-	ENSATEP00000000265	960 (aa)	-	-
ENSATET00000000287	-	4947	-	ENSATEP00000000277	1002 (aa)	-	-

Gene Model

Click here to download ENSATEG00000000232's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSATEG00000000232's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSATEG00000000232	r3hdm1	50	39.347	ENSATEG00000015519	-	64	37.984
ENSATEG00000000232	r3hdm1	77	61.481	ENSATEG00000025024	r3hdm2	75	59.864

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSATEG00000000232	r3hdm1	92	54.894	ENSG00000048991	R3HDM1	99	62.903	Homo_sapiens
ENSATEG00000000232	r3hdm1	100	89.353	ENSAPOG00000020850	r3hdm1	96	89.353	Acanthochromis_polyacanthus
ENSATEG00000000232	r3hdm1	99	46.169	ENSAMEG00000014886	R3HDM1	89	45.351	Ailuropoda_melanoleuca
ENSATEG00000000232	r3hdm1	100	85.837	ENSAOCG00000005192	r3hdm1	100	85.837	Amphiprion_ocellaris
ENSATEG00000000232	r3hdm1	100	88.241	ENSAPEG00000016108	r3hdm1	100	88.241	Amphiprion_percula
ENSATEG00000000232	r3hdm1	99	45.753	ENSAPLG00000015231	R3HDM1	89	46.073	Anas_platyrhynchos
ENSATEG00000000232	r3hdm1	99	45.288	ENSACAG00000001676	R3HDM1	89	46.225	Anolis_carolinensis
ENSATEG00000000232	r3hdm1	82	63.441	ENSANAG00000035334	R3HDM1	87	63.441	Aotus_nancymaae
ENSATEG00000000232	r3hdm1	100	86.515	ENSACLG00000027282	r3hdm1	100	86.203	Astatotilapia_calliptera
ENSATEG00000000232	r3hdm1	88	69.909	ENSAMXG00000003536	r3hdm1	78	71.473	Astyanax_mexicanus
ENSATEG00000000232	r3hdm1	100	53.521	ENSAMXG00000012861	R3HDM1	89	59.806	Astyanax_mexicanus
ENSATEG00000000232	r3hdm1	99	47.465	ENSBTAG00000013302	R3HDM1	89	45.971	Bos_taurus
ENSATEG00000000232	r3hdm1	82	63.172	ENSCJAG00000011718	R3HDM1	87	63.172	Callithrix_jacchus
ENSATEG00000000232	r3hdm1	99	46.169	ENSCAFG00000005075	R3HDM1	89	45.706	Canis_familiaris
ENSATEG00000000232	r3hdm1	99	46.169	ENSCAFG00020016119	R3HDM1	92	54.932	Canis_lupus_dingo
ENSATEG00000000232	r3hdm1	99	46.319	ENSCHIG00000020851	R3HDM1	89	45.822	Capra_hircus
ENSATEG00000000232	r3hdm1	99	46.805	ENSCPOG00000012784	R3HDM1	100	59.206	Cavia_porcellus
ENSATEG00000000232	r3hdm1	88	62.617	ENSCCAG00000027199	R3HDM1	87	62.634	Cebus_capucinus
ENSATEG00000000232	r3hdm1	87	63.768	ENSCATG00000023642	R3HDM1	87	63.172	Cercocebus_atys
ENSATEG00000000232	r3hdm1	99	45.488	ENSCLAG00000007962	R3HDM1	100	58.219	Chinchilla_lanigera
ENSATEG00000000232	r3hdm1	99	45.354	ENSCSAG00000016356	R3HDM1	89	45.304	Chlorocebus_sabaeus
ENSATEG00000000232	r3hdm1	75	66.154	ENSCHOG00000013638	R3HDM1	64	66.154	Choloepus_hoffmanni
ENSATEG00000000232	r3hdm1	94	47.095	ENSCPBG00000009645	R3HDM1	86	70.504	Chrysemys_picta_bellii
ENSATEG00000000232	r3hdm1	95	63.172	ENSCANG00000034748	R3HDM1	87	63.172	Colobus_angolensis_palliatus
ENSATEG00000000232	r3hdm1	99	45.037	ENSCGRG00001012357	R3hdm1	86	45.147	Cricetulus_griseus_chok1gshd
ENSATEG00000000232	r3hdm1	99	45.037	ENSCGRG00000012080	R3hdm1	100	58.904	Cricetulus_griseus_crigri
ENSATEG00000000232	r3hdm1	100	70.645	ENSCSEG00000008944	r3hdm1	100	71.635	Cynoglossus_semilaevis
ENSATEG00000000232	r3hdm1	100	78.352	ENSCVAG00000007582	r3hdm1	100	77.756	Cyprinodon_variegatus
ENSATEG00000000232	r3hdm1	99	44.947	ENSDNOG00000000771	R3HDM1	89	44.508	Dasypus_novemcinctus
ENSATEG00000000232	r3hdm1	99	42.486	ENSETEG00000013606	R3HDM1	84	53.953	Echinops_telfairi
ENSATEG00000000232	r3hdm1	99	48.206	ENSEASG00005007392	R3HDM1	88	56.459	Equus_asinus_asinus
ENSATEG00000000232	r3hdm1	99	48.206	ENSECAG00000019114	R3HDM1	88	56.459	Equus_caballus
ENSATEG00000000232	r3hdm1	90	52.818	ENSELUG00000014413	r3hdm1	83	53.274	Esox_lucius
ENSATEG00000000232	r3hdm1	94	52.138	ENSELUG00000004909	R3HDM1	81	52.738	Esox_lucius
ENSATEG00000000232	r3hdm1	99	48.126	ENSFCAG00000027113	R3HDM1	88	56.490	Felis_catus
ENSATEG00000000232	r3hdm1	83	47.299	ENSFALG00000013731	R3HDM1	90	42.770	Ficedula_albicollis
ENSATEG00000000232	r3hdm1	99	45.764	ENSFDAG00000016478	R3HDM1	100	58.904	Fukomys_damarensis
ENSATEG00000000232	r3hdm1	100	76.190	ENSFHEG00000018713	r3hdm1	100	76.381	Fundulus_heteroclitus
ENSATEG00000000232	r3hdm1	67	63.278	ENSGMOG00000006042	-	79	56.432	Gadus_morhua
ENSATEG00000000232	r3hdm1	91	62.366	ENSGALG00000012246	R3HDM1	85	64.935	Gallus_gallus
ENSATEG00000000232	r3hdm1	100	75.748	ENSGAFG00000006203	r3hdm1	100	76.264	Gambusia_affinis
ENSATEG00000000232	r3hdm1	95	80.789	ENSGACG00000014925	r3hdm1	92	80.685	Gasterosteus_aculeatus
ENSATEG00000000232	r3hdm1	86	66.881	ENSGAGG00000007840	R3HDM1	75	66.881	Gopherus_agassizii
ENSATEG00000000232	r3hdm1	89	56.496	ENSGGOG00000008156	R3HDM1	87	63.441	Gorilla_gorilla
ENSATEG00000000232	r3hdm1	52	81.784	ENSHBUG00000015737	R3HDM1	96	81.784	Haplochromis_burtoni
ENSATEG00000000232	r3hdm1	99	46.549	ENSHGLG00000015718	R3HDM1	100	60.274	Heterocephalus_glaber_female
ENSATEG00000000232	r3hdm1	99	40.491	ENSHGLG00100015374	-	91	39.657	Heterocephalus_glaber_male
ENSATEG00000000232	r3hdm1	99	46.455	ENSHGLG00100003184	-	100	60.616	Heterocephalus_glaber_male
ENSATEG00000000232	r3hdm1	100	70.155	ENSHCOG00000013366	r3hdm1	100	70.052	Hippocampus_comes
ENSATEG00000000232	r3hdm1	91	62.973	ENSIPUG00000013629	r3hdm1	89	49.146	Ictalurus_punctatus
ENSATEG00000000232	r3hdm1	86	71.562	ENSIPUG00000001676	R3HDM1	89	72.168	Ictalurus_punctatus
ENSATEG00000000232	r3hdm1	99	46.274	ENSSTOG00000007572	R3HDM1	100	59.247	Ictidomys_tridecemlineatus
ENSATEG00000000232	r3hdm1	91	58.571	ENSLACG00000005334	R3HDM1	89	57.857	Latimeria_chalumnae
ENSATEG00000000232	r3hdm1	99	48.646	ENSLOCG00000001641	r3hdm1	90	48.213	Lepisosteus_oculatus
ENSATEG00000000232	r3hdm1	87	67.178	ENSLAFG00000009065	R3HDM1	83	67.178	Loxodonta_africana
ENSATEG00000000232	r3hdm1	87	64.010	ENSMFAG00000030331	R3HDM1	87	63.441	Macaca_fascicularis
ENSATEG00000000232	r3hdm1	87	63.768	ENSMMUG00000009844	R3HDM1	87	63.441	Macaca_mulatta
ENSATEG00000000232	r3hdm1	87	64.010	ENSMNEG00000027793	R3HDM1	87	63.441	Macaca_nemestrina
ENSATEG00000000232	r3hdm1	87	64.010	ENSMLEG00000043189	R3HDM1	87	63.441	Mandrillus_leucophaeus
ENSATEG00000000232	r3hdm1	100	88.668	ENSMAMG00000004532	r3hdm1	100	88.668	Mastacembelus_armatus
ENSATEG00000000232	r3hdm1	100	86.508	ENSMZEG00005003157	r3hdm1	100	86.111	Maylandia_zebra
ENSATEG00000000232	r3hdm1	99	45.725	ENSMGAG00000012461	R3HDM1	88	45.917	Meleagris_gallopavo
ENSATEG00000000232	r3hdm1	99	44.837	ENSMAUG00000010315	R3hdm1	100	58.904	Mesocricetus_auratus
ENSATEG00000000232	r3hdm1	82	62.903	ENSMICG00000042655	-	92	62.903	Microcebus_murinus
ENSATEG00000000232	r3hdm1	82	63.172	ENSMICG00000005900	-	87	63.172	Microcebus_murinus
ENSATEG00000000232	r3hdm1	99	44.596	ENSMODG00000000923	R3HDM1	96	44.192	Monodelphis_domestica
ENSATEG00000000232	r3hdm1	100	84.846	ENSMALG00000009000	r3hdm1	90	84.749	Monopterus_albus
ENSATEG00000000232	r3hdm1	99	44.885	MGP_CAROLIEiJ_G0014543	R3hdm1	100	64.344	Mus_caroli
ENSATEG00000000232	r3hdm1	99	44.659	ENSMUSG00000056211	R3hdm1	100	64.344	Mus_musculus
ENSATEG00000000232	r3hdm1	99	44.557	MGP_PahariEiJ_G0027779	R3hdm1	100	64.344	Mus_pahari
ENSATEG00000000232	r3hdm1	99	44.659	MGP_SPRETEiJ_G0015350	R3hdm1	100	64.344	Mus_spretus
ENSATEG00000000232	r3hdm1	99	46.266	ENSMPUG00000002412	R3HDM1	89	45.627	Mustela_putorius_furo
ENSATEG00000000232	r3hdm1	99	45.455	ENSMLUG00000013824	R3HDM1	89	45.042	Myotis_lucifugus
ENSATEG00000000232	r3hdm1	87	64.010	ENSNLEG00000008622	R3HDM1	87	63.441	Nomascus_leucogenys
ENSATEG00000000232	r3hdm1	94	41.036	ENSMEUG00000011784	R3HDM1	93	40.559	Notamacropus_eugenii
ENSATEG00000000232	r3hdm1	99	45.065	ENSODEG00000008607	R3HDM1	100	58.562	Octodon_degus
ENSATEG00000000232	r3hdm1	94	84.533	ENSONIG00000012017	r3hdm1	85	84.103	Oreochromis_niloticus
ENSATEG00000000232	r3hdm1	99	44.669	ENSOANG00000007987	R3HDM1	89	45.202	Ornithorhynchus_anatinus
ENSATEG00000000232	r3hdm1	99	46.079	ENSOCUG00000017366	R3HDM1	97	45.785	Oryctolagus_cuniculus
ENSATEG00000000232	r3hdm1	100	74.143	ENSORLG00000004297	r3hdm1	100	73.728	Oryzias_latipes
ENSATEG00000000232	r3hdm1	100	74.066	ENSORLG00015017355	r3hdm1	100	71.914	Oryzias_latipes_hsok
ENSATEG00000000232	r3hdm1	50	76.493	ENSOMEG00000003882	-	97	76.879	Oryzias_melastigma
ENSATEG00000000232	r3hdm1	99	45.698	ENSOGAG00000003136	R3HDM1	89	46.220	Otolemur_garnettii
ENSATEG00000000232	r3hdm1	99	46.072	ENSOARG00000010788	R3HDM1	89	45.977	Ovis_aries
ENSATEG00000000232	r3hdm1	82	63.441	ENSPPAG00000027858	R3HDM1	87	63.441	Pan_paniscus
ENSATEG00000000232	r3hdm1	99	45.975	ENSPPRG00000002626	R3HDM1	87	62.903	Panthera_pardus
ENSATEG00000000232	r3hdm1	82	63.172	ENSPTIG00000016581	R3HDM1	87	63.172	Panthera_tigris_altaica
ENSATEG00000000232	r3hdm1	92	54.894	ENSPTRG00000012494	R3HDM1	87	63.441	Pan_troglodytes
ENSATEG00000000232	r3hdm1	87	64.010	ENSPANG00000026448	R3HDM1	87	63.441	Papio_anubis
ENSATEG00000000232	r3hdm1	89	71.207	ENSPKIG00000004328	r3hdm1	83	65.449	Paramormyrops_kingsleyae
ENSATEG00000000232	r3hdm1	99	45.288	ENSPSIG00000012915	R3HDM1	88	46.035	Pelodiscus_sinensis
ENSATEG00000000232	r3hdm1	99	45.037	ENSPEMG00000015187	R3hdm1	100	58.904	Peromyscus_maniculatus_bairdii
ENSATEG00000000232	r3hdm1	94	39.202	ENSPMAG00000003369	-	89	39.434	Petromyzon_marinus
ENSATEG00000000232	r3hdm1	99	47.394	ENSPCIG00000002491	R3HDM1	88	55.238	Phascolarctos_cinereus
ENSATEG00000000232	r3hdm1	100	75.024	ENSPFOG00000015036	r3hdm1	100	75.024	Poecilia_formosa
ENSATEG00000000232	r3hdm1	100	77.034	ENSPLAG00000018042	r3hdm1	100	77.034	Poecilia_latipinna
ENSATEG00000000232	r3hdm1	100	76.931	ENSPMEG00000023947	r3hdm1	100	76.931	Poecilia_mexicana
ENSATEG00000000232	r3hdm1	100	76.238	ENSPREG00000007902	r3hdm1	100	76.535	Poecilia_reticulata
ENSATEG00000000232	r3hdm1	92	53.640	ENSPPYG00000012815	R3HDM1	89	44.785	Pongo_abelii
ENSATEG00000000232	r3hdm1	87	54.192	ENSPCAG00000006208	R3HDM1	77	54.030	Procavia_capensis
ENSATEG00000000232	r3hdm1	99	45.499	ENSPCOG00000012698	R3HDM1	87	59.892	Propithecus_coquereli
ENSATEG00000000232	r3hdm1	92	50.672	ENSPVAG00000006098	R3HDM1	89	40.286	Pteropus_vampyrus
ENSATEG00000000232	r3hdm1	85	73.529	ENSPNAG00000005436	R3HDM1	87	72.549	Pygocentrus_nattereri
ENSATEG00000000232	r3hdm1	86	73.203	ENSPNAG00000013952	r3hdm1	77	73.203	Pygocentrus_nattereri
ENSATEG00000000232	r3hdm1	99	45.336	ENSRNOG00000004099	R3hdm1	89	45.421	Rattus_norvegicus
ENSATEG00000000232	r3hdm1	85	72.464	ENSRBIG00000033317	R3HDM1	86	72.464	Rhinopithecus_bieti
ENSATEG00000000232	r3hdm1	95	63.441	ENSRROG00000034534	R3HDM1	87	63.441	Rhinopithecus_roxellana
ENSATEG00000000232	r3hdm1	82	62.903	ENSSBOG00000020389	R3HDM1	87	62.903	Saimiri_boliviensis_boliviensis
ENSATEG00000000232	r3hdm1	99	47.681	ENSSHAG00000016999	R3HDM1	88	47.231	Sarcophilus_harrisii
ENSATEG00000000232	r3hdm1	87	72.468	ENSSFOG00015014134	r3hdm1	79	71.519	Scleropages_formosus
ENSATEG00000000232	r3hdm1	100	48.684	ENSSFOG00015019851	-	90	57.722	Scleropages_formosus
ENSATEG00000000232	r3hdm1	100	82.049	ENSSMAG00000001669	r3hdm1	90	81.542	Scophthalmus_maximus
ENSATEG00000000232	r3hdm1	100	86.850	ENSSDUG00000010749	r3hdm1	100	87.462	Seriola_dumerili
ENSATEG00000000232	r3hdm1	100	85.020	ENSSLDG00000004499	r3hdm1	90	85.516	Seriola_lalandi_dorsalis
ENSATEG00000000232	r3hdm1	55	47.712	ENSSARG00000000352	-	51	47.712	Sorex_araneus
ENSATEG00000000232	r3hdm1	99	45.629	ENSSPUG00000004167	R3HDM1	88	46.044	Sphenodon_punctatus
ENSATEG00000000232	r3hdm1	100	88.832	ENSSPAG00000004648	r3hdm1	100	88.217	Stegastes_partitus
ENSATEG00000000232	r3hdm1	95	60.377	ENSSSCG00000015692	R3HDM1	87	60.377	Sus_scrofa
ENSATEG00000000232	r3hdm1	96	46.169	ENSTGUG00000011750	R3HDM1	89	45.393	Taeniopygia_guttata
ENSATEG00000000232	r3hdm1	100	78.634	ENSTRUG00000011654	r3hdm1	99	78.341	Takifugu_rubripes
ENSATEG00000000232	r3hdm1	98	69.789	ENSTNIG00000010362	r3hdm1	99	70.191	Tetraodon_nigroviridis
ENSATEG00000000232	r3hdm1	89	46.667	ENSTTRG00000003935	R3HDM1	79	46.245	Tursiops_truncatus
ENSATEG00000000232	r3hdm1	72	63.978	ENSUAMG00000024806	R3HDM1	93	63.172	Ursus_americanus
ENSATEG00000000232	r3hdm1	99	48.024	ENSUMAG00000005552	R3HDM1	87	63.172	Ursus_maritimus
ENSATEG00000000232	r3hdm1	87	48.605	ENSVPAG00000007333	R3HDM1	74	48.548	Vicugna_pacos
ENSATEG00000000232	r3hdm1	99	48.328	ENSVVUG00000006457	R3HDM1	88	63.172	Vulpes_vulpes
ENSATEG00000000232	r3hdm1	93	45.474	ENSXETG00000019330	r3hdm1	87	46.344	Xenopus_tropicalis
ENSATEG00000000232	r3hdm1	77	72.776	ENSXCOG00000017448	r3hdm1	93	73.572	Xiphophorus_couchianus
ENSATEG00000000232	r3hdm1	100	76.008	ENSXMAG00000007885	r3hdm1	100	74.617	Xiphophorus_maculatus