EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSATEG00000004878 (Gene tree)
Gene ID: -
Gene Symbol: pspc1
Alias: fj85a06|wu:fj85a06|zgc:136470
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Anabas_testudineus
Status: putative
Strand: Plus strand
Length: 11370 bases
Position: chrOOHO01000004.1:11512201-11523570
Accession: ZDB-GENE-030131-9530
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSATEP00000007033	RRM_1	PF00076.22	4.3e-33	1	2
ENSATEP00000007033	RRM_1	PF00076.22	4.3e-33	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSATET00000007153	-	1527	-	ENSATEP00000007033	508 (aa)	-	-

Gene Model

Click here to download ENSATEG00000004878's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSATEG00000004878's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSATEG00000004878	pspc1	91	47.059	ENSATEG00000002981	sfpq	54	58.084

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSATEG00000004878	pspc1	76	61.928	ENSG00000121390	PSPC1	75	75.806	Homo_sapiens
ENSATEG00000004878	pspc1	100	75.568	ENSAPOG00000015946	pspc1	100	76.136	Acanthochromis_polyacanthus
ENSATEG00000004878	pspc1	76	62.350	ENSAMEG00000017420	PSPC1	88	58.085	Ailuropoda_melanoleuca
ENSATEG00000004878	pspc1	100	79.691	ENSACIG00000018695	pspc1	100	79.497	Amphilophus_citrinellus
ENSATEG00000004878	pspc1	100	75.849	ENSAOCG00000005279	pspc1	100	76.415	Amphiprion_ocellaris
ENSATEG00000004878	pspc1	100	76.660	ENSAPEG00000015927	pspc1	100	76.850	Amphiprion_percula
ENSATEG00000004878	pspc1	75	54.831	ENSAPLG00000006246	PSPC1	100	54.348	Anas_platyrhynchos
ENSATEG00000004878	pspc1	61	62.422	ENSAPLG00000003643	SFPQ	55	67.138	Anas_platyrhynchos
ENSATEG00000004878	pspc1	88	55.950	ENSACAG00000002093	PSPC1	90	55.488	Anolis_carolinensis
ENSATEG00000004878	pspc1	86	62.252	ENSANAG00000000059	PSPC1	95	63.731	Aotus_nancymaae
ENSATEG00000004878	pspc1	100	76.062	ENSACLG00000027220	pspc1	100	77.132	Astatotilapia_calliptera
ENSATEG00000004878	pspc1	100	56.831	ENSAMXG00000036881	pspc1	100	56.827	Astyanax_mexicanus
ENSATEG00000004878	pspc1	96	60.314	ENSBTAG00000003934	PSPC1	91	63.057	Bos_taurus
ENSATEG00000004878	pspc1	86	60.044	ENSCJAG00000004554	PSPC1	97	60.314	Callithrix_jacchus
ENSATEG00000004878	pspc1	76	62.350	ENSCAFG00020002009	PSPC1	83	67.593	Canis_lupus_dingo
ENSATEG00000004878	pspc1	96	56.814	ENSCHIG00000016708	PSPC1	91	57.732	Capra_hircus
ENSATEG00000004878	pspc1	75	61.654	ENSTSYG00000032882	PSPC1	88	60.957	Carlito_syrichta
ENSATEG00000004878	pspc1	80	60.502	ENSCPOG00000000395	PSPC1	88	65.598	Cavia_porcellus
ENSATEG00000004878	pspc1	86	58.761	ENSCCAG00000033498	PSPC1	97	55.916	Cebus_capucinus
ENSATEG00000004878	pspc1	76	61.687	ENSCATG00000036434	PSPC1	90	67.593	Cercocebus_atys
ENSATEG00000004878	pspc1	64	60.623	ENSCLAG00000005241	PSPC1	89	55.746	Chinchilla_lanigera
ENSATEG00000004878	pspc1	76	60.964	ENSCHOG00000008913	PSPC1	88	57.415	Choloepus_hoffmanni
ENSATEG00000004878	pspc1	91	56.504	ENSCPBG00000020859	PSPC1	88	57.203	Chrysemys_picta_bellii
ENSATEG00000004878	pspc1	67	61.932	ENSCANG00000018948	PSPC1	87	66.540	Colobus_angolensis_palliatus
ENSATEG00000004878	pspc1	96	55.684	ENSCGRG00001018368	Pspc1	88	58.174	Cricetulus_griseus_chok1gshd
ENSATEG00000004878	pspc1	96	55.684	ENSCGRG00000011724	Pspc1	88	58.174	Cricetulus_griseus_crigri
ENSATEG00000004878	pspc1	100	67.048	ENSCVAG00000007679	-	100	68.762	Cyprinodon_variegatus
ENSATEG00000004878	pspc1	100	55.263	ENSDARG00000006621	pspc1	100	56.373	Danio_rerio
ENSATEG00000004878	pspc1	76	62.350	ENSDNOG00000011078	PSPC1	89	57.839	Dasypus_novemcinctus
ENSATEG00000004878	pspc1	96	53.626	ENSDORG00000016050	Pspc1	97	52.863	Dipodomys_ordii
ENSATEG00000004878	pspc1	55	44.918	ENSEBUG00000010133	pspc1	76	46.207	Eptatretus_burgeri
ENSATEG00000004878	pspc1	92	44.074	ENSEBUG00000003964	-	61	60.651	Eptatretus_burgeri
ENSATEG00000004878	pspc1	87	59.023	ENSEASG00005000119	PSPC1	83	67.593	Equus_asinus_asinus
ENSATEG00000004878	pspc1	87	59.023	ENSECAG00000017286	PSPC1	83	67.593	Equus_caballus
ENSATEG00000004878	pspc1	51	70.385	ENSEEUG00000011288	-	51	70.385	Erinaceus_europaeus
ENSATEG00000004878	pspc1	100	57.904	ENSELUG00000003746	pspc1	99	62.919	Esox_lucius
ENSATEG00000004878	pspc1	76	62.410	ENSFCAG00000027841	PSPC1	83	67.593	Felis_catus
ENSATEG00000004878	pspc1	89	56.846	ENSFALG00000008750	PSPC1	90	56.522	Ficedula_albicollis
ENSATEG00000004878	pspc1	96	55.278	ENSFDAG00000002617	PSPC1	90	58.174	Fukomys_damarensis
ENSATEG00000004878	pspc1	100	54.376	ENSGMOG00000015074	pspc1	84	73.273	Gadus_morhua
ENSATEG00000004878	pspc1	87	57.415	ENSGALG00000017142	PSPC1	88	56.992	Gallus_gallus
ENSATEG00000004878	pspc1	74	67.848	ENSGAFG00000006327	pspc1	81	70.127	Gambusia_affinis
ENSATEG00000004878	pspc1	100	63.168	ENSGACG00000014901	pspc1	94	75.449	Gasterosteus_aculeatus
ENSATEG00000004878	pspc1	91	56.504	ENSGAGG00000019164	PSPC1	88	57.203	Gopherus_agassizii
ENSATEG00000004878	pspc1	76	61.928	ENSGGOG00000003414	PSPC1	82	67.593	Gorilla_gorilla
ENSATEG00000004878	pspc1	100	73.040	ENSHBUG00000001139	pspc1	100	74.952	Haplochromis_burtoni
ENSATEG00000004878	pspc1	96	55.725	ENSHGLG00000018811	PSPC1	89	58.174	Heterocephalus_glaber_female
ENSATEG00000004878	pspc1	56	74.476	ENSHGLG00100007962	PSPC1	84	76.277	Heterocephalus_glaber_male
ENSATEG00000004878	pspc1	80	65.796	ENSHCOG00000013251	pspc1	99	63.956	Hippocampus_comes
ENSATEG00000004878	pspc1	100	60.261	ENSIPUG00000013192	pspc1	100	61.194	Ictalurus_punctatus
ENSATEG00000004878	pspc1	96	56.023	ENSSTOG00000026833	PSPC1	82	67.593	Ictidomys_tridecemlineatus
ENSATEG00000004878	pspc1	76	62.169	ENSJJAG00000018334	Pspc1	88	58.174	Jaculus_jaculus
ENSATEG00000004878	pspc1	100	59.020	ENSKMAG00000013525	-	100	60.000	Kryptolebias_marmoratus
ENSATEG00000004878	pspc1	98	73.956	ENSLBEG00000004474	pspc1	99	73.956	Labrus_bergylta
ENSATEG00000004878	pspc1	100	51.193	ENSLACG00000010762	PSPC1	90	58.282	Latimeria_chalumnae
ENSATEG00000004878	pspc1	89	59.213	ENSLOCG00000010832	pspc1	99	58.813	Lepisosteus_oculatus
ENSATEG00000004878	pspc1	86	58.887	ENSLAFG00000010968	PSPC1	88	58.386	Loxodonta_africana
ENSATEG00000004878	pspc1	76	61.687	ENSMFAG00000032728	PSPC1	91	67.593	Macaca_fascicularis
ENSATEG00000004878	pspc1	76	61.687	ENSMMUG00000020262	PSPC1	89	67.073	Macaca_mulatta
ENSATEG00000004878	pspc1	76	61.687	ENSMNEG00000027401	PSPC1	88	58.174	Macaca_nemestrina
ENSATEG00000004878	pspc1	64	59.773	ENSMLEG00000039043	PSPC1	94	55.990	Mandrillus_leucophaeus
ENSATEG00000004878	pspc1	100	76.803	ENSMAMG00000004333	pspc1	100	76.413	Mastacembelus_armatus
ENSATEG00000004878	pspc1	100	76.062	ENSMZEG00005005726	pspc1	100	77.132	Maylandia_zebra
ENSATEG00000004878	pspc1	76	54.808	ENSMGAG00000015134	PSPC1	100	54.327	Meleagris_gallopavo
ENSATEG00000004878	pspc1	84	60.090	ENSMAUG00000021067	Pspc1	86	64.899	Mesocricetus_auratus
ENSATEG00000004878	pspc1	87	60.169	ENSMICG00000013970	PSPC1	88	65.306	Microcebus_murinus
ENSATEG00000004878	pspc1	76	61.650	ENSMOCG00000006060	Pspc1	88	57.749	Microtus_ochrogaster
ENSATEG00000004878	pspc1	81	85.714	ENSMMOG00000004352	pspc1	73	85.714	Mola_mola
ENSATEG00000004878	pspc1	81	60.227	ENSMODG00000008029	PSPC1	66	60.964	Monodelphis_domestica
ENSATEG00000004878	pspc1	100	76.265	ENSMALG00000008914	pspc1	100	76.265	Monopterus_albus
ENSATEG00000004878	pspc1	86	57.325	MGP_CAROLIEiJ_G0019341	Pspc1	84	69.388	Mus_caroli
ENSATEG00000004878	pspc1	86	57.325	ENSMUSG00000021938	Pspc1	83	69.388	Mus_musculus
ENSATEG00000004878	pspc1	96	54.839	MGP_PahariEiJ_G0030359	Pspc1	84	69.388	Mus_pahari
ENSATEG00000004878	pspc1	86	57.325	MGP_SPRETEiJ_G0020232	Pspc1	84	69.388	Mus_spretus
ENSATEG00000004878	pspc1	76	62.350	ENSMPUG00000013347	PSPC1	88	58.085	Mustela_putorius_furo
ENSATEG00000004878	pspc1	76	62.440	ENSMLUG00000017663	PSPC1	89	58.439	Myotis_lucifugus
ENSATEG00000004878	pspc1	87	59.275	ENSNGAG00000011271	Pspc1	88	57.749	Nannospalax_galili
ENSATEG00000004878	pspc1	74	80.103	ENSNBRG00000014059	pspc1	92	80.519	Neolamprologus_brichardi
ENSATEG00000004878	pspc1	76	61.928	ENSNLEG00000001294	PSPC1	88	58.386	Nomascus_leucogenys
ENSATEG00000004878	pspc1	96	52.190	ENSODEG00000007817	-	88	57.328	Octodon_degus
ENSATEG00000004878	pspc1	100	52.602	ENSODEG00000019012	-	99	53.717	Octodon_degus
ENSATEG00000004878	pspc1	100	74.379	ENSONIG00000012010	pspc1	99	76.099	Oreochromis_niloticus
ENSATEG00000004878	pspc1	64	60.057	ENSOANG00000009017	-	100	54.902	Ornithorhynchus_anatinus
ENSATEG00000004878	pspc1	81	53.191	ENSOANG00000011381	-	92	51.429	Ornithorhynchus_anatinus
ENSATEG00000004878	pspc1	76	62.169	ENSOCUG00000006153	PSPC1	97	55.344	Oryctolagus_cuniculus
ENSATEG00000004878	pspc1	100	65.458	ENSORLG00000004232	-	100	66.925	Oryzias_latipes
ENSATEG00000004878	pspc1	100	66.538	ENSORLG00020000578	PSPC1	100	67.311	Oryzias_latipes_hni
ENSATEG00000004878	pspc1	100	65.840	ENSORLG00015017480	pspc1	100	67.311	Oryzias_latipes_hsok
ENSATEG00000004878	pspc1	76	62.410	ENSOGAG00000012643	PSPC1	97	55.725	Otolemur_garnettii
ENSATEG00000004878	pspc1	86	57.996	ENSOARG00000014163	PSPC1	95	61.620	Ovis_aries
ENSATEG00000004878	pspc1	76	65.500	ENSPPAG00000009836	PSPC1	92	67.692	Pan_paniscus
ENSATEG00000004878	pspc1	76	62.410	ENSPPRG00000008833	PSPC1	88	58.386	Panthera_pardus
ENSATEG00000004878	pspc1	64	60.340	ENSPTIG00000016917	PSPC1	84	55.990	Panthera_tigris_altaica
ENSATEG00000004878	pspc1	76	64.500	ENSPTRG00000005677	PSPC1	74	78.161	Pan_troglodytes
ENSATEG00000004878	pspc1	76	61.687	ENSPANG00000001992	PSPC1	89	67.593	Papio_anubis
ENSATEG00000004878	pspc1	100	56.618	ENSPKIG00000003578	pspc1	100	61.922	Paramormyrops_kingsleyae
ENSATEG00000004878	pspc1	91	55.172	ENSPSIG00000005168	PSPC1	88	56.568	Pelodiscus_sinensis
ENSATEG00000004878	pspc1	64	71.687	ENSPMGG00000015135	pspc1	91	71.386	Periophthalmus_magnuspinnatus
ENSATEG00000004878	pspc1	76	61.893	ENSPEMG00000015214	Pspc1	88	57.962	Peromyscus_maniculatus_bairdii
ENSATEG00000004878	pspc1	55	44.097	ENSPMAG00000004618	pspc1	83	44.891	Petromyzon_marinus
ENSATEG00000004878	pspc1	81	60.227	ENSPCIG00000017680	PSPC1	88	58.386	Phascolarctos_cinereus
ENSATEG00000004878	pspc1	99	65.840	ENSPFOG00000003362	pspc1	100	68.321	Poecilia_formosa
ENSATEG00000004878	pspc1	100	65.784	ENSPLAG00000011540	pspc1	100	68.242	Poecilia_latipinna
ENSATEG00000004878	pspc1	100	65.595	ENSPMEG00000008322	pspc1	100	68.053	Poecilia_mexicana
ENSATEG00000004878	pspc1	100	65.217	ENSPREG00000007786	pspc1	100	67.675	Poecilia_reticulata
ENSATEG00000004878	pspc1	76	61.446	ENSPPYG00000005186	PSPC1	89	59.155	Pongo_abelii
ENSATEG00000004878	pspc1	87	59.322	ENSPCOG00000014364	PSPC1	97	54.771	Propithecus_coquereli
ENSATEG00000004878	pspc1	87	58.439	ENSPVAG00000005036	PSPC1	92	56.619	Pteropus_vampyrus
ENSATEG00000004878	pspc1	100	76.448	ENSPNYG00000008893	pspc1	100	77.132	Pundamilia_nyererei
ENSATEG00000004878	pspc1	100	58.780	ENSPNAG00000016511	pspc1	100	61.710	Pygocentrus_nattereri
ENSATEG00000004878	pspc1	96	55.048	ENSRNOG00000020782	Pspc1	86	60.345	Rattus_norvegicus
ENSATEG00000004878	pspc1	80	60.274	ENSRBIG00000036057	PSPC1	91	67.593	Rhinopithecus_bieti
ENSATEG00000004878	pspc1	76	61.928	ENSRROG00000036334	PSPC1	82	67.593	Rhinopithecus_roxellana
ENSATEG00000004878	pspc1	77	58.722	ENSSBOG00000028172	PSPC1	90	64.130	Saimiri_boliviensis_boliviensis
ENSATEG00000004878	pspc1	81	58.444	ENSSHAG00000004696	PSPC1	88	60.465	Sarcophilus_harrisii
ENSATEG00000004878	pspc1	87	65.953	ENSSFOG00015001395	pspc1	99	68.103	Scleropages_formosus
ENSATEG00000004878	pspc1	100	71.670	ENSSMAG00000001761	pspc1	100	70.919	Scophthalmus_maximus
ENSATEG00000004878	pspc1	100	73.713	ENSSDUG00000010651	pspc1	100	76.838	Seriola_dumerili
ENSATEG00000004878	pspc1	100	78.447	ENSSLDG00000004284	pspc1	100	79.029	Seriola_lalandi_dorsalis
ENSATEG00000004878	pspc1	76	64.096	ENSSARG00000000888	PSPC1	89	57.749	Sorex_araneus
ENSATEG00000004878	pspc1	91	59.205	ENSSPUG00000008550	PSPC1	90	60.000	Sphenodon_punctatus
ENSATEG00000004878	pspc1	100	74.813	ENSSPAG00000001921	pspc1	100	76.679	Stegastes_partitus
ENSATEG00000004878	pspc1	76	62.651	ENSSSCG00000009569	PSPC1	85	67.576	Sus_scrofa
ENSATEG00000004878	pspc1	87	57.415	ENSTGUG00000011295	PSPC1	99	56.992	Taeniopygia_guttata
ENSATEG00000004878	pspc1	100	62.928	ENSTRUG00000011335	pspc1	100	64.259	Takifugu_rubripes
ENSATEG00000004878	pspc1	100	62.500	ENSTNIG00000010358	pspc1	100	64.829	Tetraodon_nigroviridis
ENSATEG00000004878	pspc1	87	50.000	ENSTBEG00000002361	PSPC1	63	60.062	Tupaia_belangeri
ENSATEG00000004878	pspc1	86	59.529	ENSTTRG00000003343	PSPC1	90	58.491	Tursiops_truncatus
ENSATEG00000004878	pspc1	51	78.846	ENSUAMG00000012309	PSPC1	74	78.846	Ursus_americanus
ENSATEG00000004878	pspc1	76	62.110	ENSUMAG00000013993	PSPC1	91	67.284	Ursus_maritimus
ENSATEG00000004878	pspc1	64	60.057	ENSVPAG00000010029	PSPC1	100	55.990	Vicugna_pacos
ENSATEG00000004878	pspc1	76	62.350	ENSVVUG00000006414	PSPC1	84	67.593	Vulpes_vulpes
ENSATEG00000004878	pspc1	74	68.608	ENSXCOG00000017438	pspc1	93	70.886	Xiphophorus_couchianus
ENSATEG00000004878	pspc1	74	68.861	ENSXMAG00000007929	pspc1	93	71.139	Xiphophorus_maculatus