EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSATEG00000005348 (Gene tree)
Gene ID: 113169978
Gene Symbol: smg5
Alias: zgc:113841
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Anabas_testudineus
Status: putative
Strand: Plus strand
Length: 17414 bases
Position: chrOOHO01000006.1:24826713-24844126
Accession: 113169978
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSATEP00000007742	EST1	PF10374.9	1.2e-25	1	1
ENSATEP00000007761	EST1	PF10374.9	1.9e-24	1	1
ENSATEP00000007742	EST1_DNA_bind	PF10373.9	1.9e-39	1	1
ENSATEP00000007761	EST1_DNA_bind	PF10373.9	2.7e-39	1	1
ENSATEP00000007742	PIN_4	PF13638.6	7.4e-07	1	1
ENSATEP00000007761	PIN_4	PF13638.6	8.2e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSATET00000007888	-	3081	-	ENSATEP00000007761	1026 (aa)	-	-
ENSATET00000007869	-	5154	XM_026371789	ENSATEP00000007742	1117 (aa)	XP_026227574	UPI000E45DF07

Gene Model

Click here to download ENSATEG00000005348's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSATEG00000005348's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSATEG00000005348	smg5	99	67.313	ENSG00000198952	SMG5	99	65.896	Homo_sapiens
ENSATEG00000005348	smg5	100	91.940	ENSAPOG00000019690	smg5	100	92.389	Acanthochromis_polyacanthus
ENSATEG00000005348	smg5	98	65.678	ENSAMEG00000014458	SMG5	100	64.995	Ailuropoda_melanoleuca
ENSATEG00000005348	smg5	100	88.804	ENSACIG00000001353	smg5	100	88.995	Amphilophus_citrinellus
ENSATEG00000005348	smg5	100	92.718	ENSAOCG00000019483	smg5	100	92.806	Amphiprion_ocellaris
ENSATEG00000005348	smg5	100	92.629	ENSAPEG00000022949	smg5	100	92.806	Amphiprion_percula
ENSATEG00000005348	smg5	98	66.379	ENSAPLG00000010263	SMG5	100	65.481	Anas_platyrhynchos
ENSATEG00000005348	smg5	99	67.119	ENSANAG00000032899	SMG5	99	65.896	Aotus_nancymaae
ENSATEG00000005348	smg5	100	88.830	ENSACLG00000009311	smg5	100	89.814	Astatotilapia_calliptera
ENSATEG00000005348	smg5	100	79.070	ENSAMXG00000024616	smg5	100	78.891	Astyanax_mexicanus
ENSATEG00000005348	smg5	99	66.796	ENSBTAG00000009435	SMG5	99	66.377	Bos_taurus
ENSATEG00000005348	smg5	92	49.633	ENSBTAG00000021747	-	92	49.633	Bos_taurus
ENSATEG00000005348	smg5	99	67.216	ENSCJAG00000005684	SMG5	99	65.896	Callithrix_jacchus
ENSATEG00000005348	smg5	99	66.667	ENSCAFG00000016839	SMG5	99	66.021	Canis_familiaris
ENSATEG00000005348	smg5	99	66.667	ENSCAFG00020006061	SMG5	99	66.021	Canis_lupus_dingo
ENSATEG00000005348	smg5	99	66.731	ENSCHIG00000007709	SMG5	99	66.184	Capra_hircus
ENSATEG00000005348	smg5	89	49.875	ENSCHIG00000006323	-	92	49.875	Capra_hircus
ENSATEG00000005348	smg5	99	66.474	ENSTSYG00000004099	SMG5	99	66.538	Carlito_syrichta
ENSATEG00000005348	smg5	95	51.580	ENSCAPG00000003631	SMG5	100	50.405	Cavia_aperea
ENSATEG00000005348	smg5	99	66.505	ENSCPOG00000015696	SMG5	99	65.484	Cavia_porcellus
ENSATEG00000005348	smg5	99	67.313	ENSCCAG00000027409	SMG5	99	65.896	Cebus_capucinus
ENSATEG00000005348	smg5	99	67.313	ENSCATG00000030539	SMG5	99	65.868	Cercocebus_atys
ENSATEG00000005348	smg5	99	66.537	ENSCLAG00000003983	SMG5	99	65.580	Chinchilla_lanigera
ENSATEG00000005348	smg5	99	67.313	ENSCSAG00000002120	SMG5	99	65.868	Chlorocebus_sabaeus
ENSATEG00000005348	smg5	54	76.173	ENSCHOG00000008741	-	57	76.173	Choloepus_hoffmanni
ENSATEG00000005348	smg5	94	64.960	ENSCPBG00000025848	SMG5	100	63.976	Chrysemys_picta_bellii
ENSATEG00000005348	smg5	93	33.980	ENSCING00000008706	-	91	38.653	Ciona_intestinalis
ENSATEG00000005348	smg5	99	64.888	ENSCANG00000029208	SMG5	99	63.471	Colobus_angolensis_palliatus
ENSATEG00000005348	smg5	99	65.955	ENSCGRG00001006336	Smg5	99	65.764	Cricetulus_griseus_chok1gshd
ENSATEG00000005348	smg5	98	65.909	ENSCGRG00000005111	Smg5	100	65.517	Cricetulus_griseus_crigri
ENSATEG00000005348	smg5	100	86.505	ENSCSEG00000014220	smg5	100	85.380	Cynoglossus_semilaevis
ENSATEG00000005348	smg5	100	78.870	ENSCVAG00000000529	smg5	100	78.286	Cyprinodon_variegatus
ENSATEG00000005348	smg5	100	76.923	ENSDARG00000041481	smg5	100	76.943	Danio_rerio
ENSATEG00000005348	smg5	99	63.593	ENSDNOG00000000051	SMG5	99	63.408	Dasypus_novemcinctus
ENSATEG00000005348	smg5	92	32.604	ENSDNOG00000039862	-	93	39.669	Dasypus_novemcinctus
ENSATEG00000005348	smg5	99	66.926	ENSDORG00000010382	Smg5	99	66.085	Dipodomys_ordii
ENSATEG00000005348	smg5	74	83.495	ENSETEG00000010336	SMG5	81	83.495	Echinops_telfairi
ENSATEG00000005348	smg5	91	44.969	ENSEBUG00000003739	smg5	98	45.570	Eptatretus_burgeri
ENSATEG00000005348	smg5	99	67.345	ENSEASG00005019122	SMG5	99	66.409	Equus_asinus_asinus
ENSATEG00000005348	smg5	99	67.248	ENSECAG00000001389	SMG5	99	66.409	Equus_caballus
ENSATEG00000005348	smg5	72	78.754	ENSEEUG00000012690	SMG5	75	78.187	Erinaceus_europaeus
ENSATEG00000005348	smg5	100	81.738	ENSELUG00000012585	smg5	100	80.817	Esox_lucius
ENSATEG00000005348	smg5	99	66.214	ENSFCAG00000011783	SMG5	99	65.761	Felis_catus
ENSATEG00000005348	smg5	57	69.012	ENSFALG00000001166	-	96	67.672	Ficedula_albicollis
ENSATEG00000005348	smg5	98	65.947	ENSFDAG00000017388	SMG5	100	65.290	Fukomys_damarensis
ENSATEG00000005348	smg5	94	80.698	ENSFHEG00000013939	smg5	94	90.476	Fundulus_heteroclitus
ENSATEG00000005348	smg5	100	77.778	ENSGMOG00000007310	smg5	100	78.136	Gadus_morhua
ENSATEG00000005348	smg5	99	66.477	ENSGALG00000029918	-	99	65.377	Gallus_gallus
ENSATEG00000005348	smg5	93	89.137	ENSGAFG00000021691	smg5	99	89.137	Gambusia_affinis
ENSATEG00000005348	smg5	100	87.311	ENSGACG00000013142	smg5	100	86.779	Gasterosteus_aculeatus
ENSATEG00000005348	smg5	99	65.941	ENSGAGG00000016131	SMG5	99	64.306	Gopherus_agassizii
ENSATEG00000005348	smg5	99	67.119	ENSGGOG00000010932	SMG5	99	65.800	Gorilla_gorilla
ENSATEG00000005348	smg5	100	88.909	ENSHBUG00000008654	smg5	100	90.160	Haplochromis_burtoni
ENSATEG00000005348	smg5	99	65.601	ENSHGLG00000019152	SMG5	99	65.728	Heterocephalus_glaber_female
ENSATEG00000005348	smg5	90	67.061	ENSHGLG00100015948	SMG5	99	66.559	Heterocephalus_glaber_male
ENSATEG00000005348	smg5	88	83.981	ENSHCOG00000010229	smg5	94	83.981	Hippocampus_comes
ENSATEG00000005348	smg5	100	76.930	ENSIPUG00000006624	Smg5	100	75.993	Ictalurus_punctatus
ENSATEG00000005348	smg5	99	66.538	ENSSTOG00000001780	SMG5	99	66.667	Ictidomys_tridecemlineatus
ENSATEG00000005348	smg5	99	66.538	ENSJJAG00000022763	Smg5	99	65.511	Jaculus_jaculus
ENSATEG00000005348	smg5	100	88.188	ENSKMAG00000014586	smg5	100	88.199	Kryptolebias_marmoratus
ENSATEG00000005348	smg5	100	88.968	ENSLBEG00000002145	smg5	100	89.067	Labrus_bergylta
ENSATEG00000005348	smg5	99	58.702	ENSLACG00000010521	SMG5	99	59.375	Latimeria_chalumnae
ENSATEG00000005348	smg5	100	69.531	ENSLOCG00000008380	smg5	99	73.016	Lepisosteus_oculatus
ENSATEG00000005348	smg5	99	65.863	ENSLAFG00000006241	SMG5	99	64.785	Loxodonta_africana
ENSATEG00000005348	smg5	99	67.313	ENSMFAG00000045357	SMG5	99	65.868	Macaca_fascicularis
ENSATEG00000005348	smg5	93	78.723	ENSMMUG00000000090	SMG5	99	65.868	Macaca_mulatta
ENSATEG00000005348	smg5	99	67.410	ENSMNEG00000044425	SMG5	99	65.964	Macaca_nemestrina
ENSATEG00000005348	smg5	99	61.932	ENSMLEG00000041192	SMG5	99	60.649	Mandrillus_leucophaeus
ENSATEG00000005348	smg5	100	91.637	ENSMAMG00000010683	smg5	100	91.706	Mastacembelus_armatus
ENSATEG00000005348	smg5	63	80.182	ENSMZEG00005016543	smg5	100	80.484	Maylandia_zebra
ENSATEG00000005348	smg5	100	83.111	ENSMZEG00005015815	smg5	100	83.111	Maylandia_zebra
ENSATEG00000005348	smg5	99	66.472	ENSMAUG00000010381	Smg5	99	65.134	Mesocricetus_auratus
ENSATEG00000005348	smg5	55	41.451	ENSMAUG00000000043	-	74	48.122	Mesocricetus_auratus
ENSATEG00000005348	smg5	99	67.089	ENSMICG00000002257	SMG5	99	66.181	Microcebus_murinus
ENSATEG00000005348	smg5	99	66.374	ENSMOCG00000016590	Smg5	99	65.444	Microtus_ochrogaster
ENSATEG00000005348	smg5	50	44.788	ENSMOCG00000008423	-	82	46.377	Microtus_ochrogaster
ENSATEG00000005348	smg5	100	85.803	ENSMMOG00000017199	smg5	100	85.980	Mola_mola
ENSATEG00000005348	smg5	74	34.232	ENSMODG00000004735	-	86	34.232	Monodelphis_domestica
ENSATEG00000005348	smg5	77	34.901	ENSMODG00000004532	-	87	35.000	Monodelphis_domestica
ENSATEG00000005348	smg5	75	35.492	ENSMODG00000004511	-	77	35.492	Monodelphis_domestica
ENSATEG00000005348	smg5	87	67.778	ENSMODG00000016901	SMG5	98	66.224	Monodelphis_domestica
ENSATEG00000005348	smg5	77	33.573	ENSMODG00000010675	-	89	33.573	Monodelphis_domestica
ENSATEG00000005348	smg5	100	89.769	ENSMALG00000010375	smg5	100	89.235	Monopterus_albus
ENSATEG00000005348	smg5	99	66.408	MGP_CAROLIEiJ_G0025163	Smg5	100	88.827	Mus_caroli
ENSATEG00000005348	smg5	99	66.440	ENSMUSG00000001415	Smg5	99	88.827	Mus_musculus
ENSATEG00000005348	smg5	99	66.245	MGP_PahariEiJ_G0026606	Smg5	100	89.385	Mus_pahari
ENSATEG00000005348	smg5	99	66.342	MGP_SPRETEiJ_G0026104	Smg5	100	88.827	Mus_spretus
ENSATEG00000005348	smg5	94	65.428	ENSMPUG00000004546	SMG5	100	64.426	Mustela_putorius_furo
ENSATEG00000005348	smg5	99	67.216	ENSMLUG00000008518	SMG5	99	66.343	Myotis_lucifugus
ENSATEG00000005348	smg5	99	38.252	ENSNGAG00000012101	-	92	48.655	Nannospalax_galili
ENSATEG00000005348	smg5	99	67.023	ENSNGAG00000020706	Smg5	99	64.971	Nannospalax_galili
ENSATEG00000005348	smg5	97	83.518	ENSNBRG00000004332	smg5	98	82.300	Neolamprologus_brichardi
ENSATEG00000005348	smg5	99	67.313	ENSNLEG00000012439	SMG5	99	65.896	Nomascus_leucogenys
ENSATEG00000005348	smg5	99	66.440	ENSMEUG00000012834	SMG5	99	64.430	Notamacropus_eugenii
ENSATEG00000005348	smg5	99	66.893	ENSOPRG00000009152	SMG5	99	66.118	Ochotona_princeps
ENSATEG00000005348	smg5	99	67.119	ENSODEG00000012237	SMG5	99	65.772	Octodon_degus
ENSATEG00000005348	smg5	100	89.876	ENSONIG00000008632	smg5	100	90.151	Oreochromis_niloticus
ENSATEG00000005348	smg5	98	66.963	ENSOCUG00000012886	SMG5	100	66.137	Oryctolagus_cuniculus
ENSATEG00000005348	smg5	83	43.488	ENSOCUG00000023338	-	94	43.488	Oryctolagus_cuniculus
ENSATEG00000005348	smg5	100	84.389	ENSORLG00000016239	smg5	100	84.444	Oryzias_latipes
ENSATEG00000005348	smg5	100	84.046	ENSORLG00020013127	smg5	100	84.698	Oryzias_latipes_hni
ENSATEG00000005348	smg5	100	84.389	ENSORLG00015019014	smg5	100	84.698	Oryzias_latipes_hsok
ENSATEG00000005348	smg5	84	84.771	ENSOMEG00000021330	smg5	92	84.517	Oryzias_melastigma
ENSATEG00000005348	smg5	99	66.019	ENSOGAG00000004966	SMG5	99	64.966	Otolemur_garnettii
ENSATEG00000005348	smg5	99	66.635	ENSOARG00000005778	SMG5	99	66.184	Ovis_aries
ENSATEG00000005348	smg5	91	50.122	ENSOARG00000011963	-	93	50.122	Ovis_aries
ENSATEG00000005348	smg5	99	67.216	ENSPPAG00000011996	SMG5	99	65.800	Pan_paniscus
ENSATEG00000005348	smg5	98	66.140	ENSPPRG00000011901	SMG5	100	65.647	Panthera_pardus
ENSATEG00000005348	smg5	97	62.262	ENSPTIG00000007892	SMG5	98	61.623	Panthera_tigris_altaica
ENSATEG00000005348	smg5	99	67.216	ENSPTRG00000049282	-	99	65.800	Pan_troglodytes
ENSATEG00000005348	smg5	99	67.216	ENSPTRG00000023925	SMG5	99	65.800	Pan_troglodytes
ENSATEG00000005348	smg5	99	67.313	ENSPANG00000011201	SMG5	99	65.868	Papio_anubis
ENSATEG00000005348	smg5	100	77.608	ENSPKIG00000009402	smg5	100	77.033	Paramormyrops_kingsleyae
ENSATEG00000005348	smg5	98	67.773	ENSPSIG00000015198	SMG5	100	65.959	Pelodiscus_sinensis
ENSATEG00000005348	smg5	100	72.727	ENSPMGG00000010465	smg5	100	72.232	Periophthalmus_magnuspinnatus
ENSATEG00000005348	smg5	99	66.439	ENSPEMG00000001819	Smg5	99	65.861	Peromyscus_maniculatus_bairdii
ENSATEG00000005348	smg5	57	40.656	ENSPEMG00000010022	-	73	47.717	Peromyscus_maniculatus_bairdii
ENSATEG00000005348	smg5	99	67.610	ENSPCIG00000018938	SMG5	99	65.541	Phascolarctos_cinereus
ENSATEG00000005348	smg5	100	86.643	ENSPFOG00000010191	smg5	100	86.833	Poecilia_formosa
ENSATEG00000005348	smg5	100	86.376	ENSPLAG00000009332	smg5	100	86.655	Poecilia_latipinna
ENSATEG00000005348	smg5	100	86.643	ENSPMEG00000014105	smg5	100	86.744	Poecilia_mexicana
ENSATEG00000005348	smg5	100	86.554	ENSPREG00000017713	smg5	100	86.833	Poecilia_reticulata
ENSATEG00000005348	smg5	99	67.313	ENSPPYG00000000723	SMG5	99	65.896	Pongo_abelii
ENSATEG00000005348	smg5	77	80.556	ENSPCAG00000008412	SMG5	81	80.556	Procavia_capensis
ENSATEG00000005348	smg5	99	67.153	ENSPCOG00000004741	SMG5	99	66.408	Propithecus_coquereli
ENSATEG00000005348	smg5	99	60.621	ENSPVAG00000016748	SMG5	99	58.756	Pteropus_vampyrus
ENSATEG00000005348	smg5	100	88.673	ENSPNYG00000013397	smg5	100	89.744	Pundamilia_nyererei
ENSATEG00000005348	smg5	100	79.055	ENSPNAG00000028363	smg5	100	77.140	Pygocentrus_nattereri
ENSATEG00000005348	smg5	99	66.051	ENSRNOG00000019590	Smg5	99	65.314	Rattus_norvegicus
ENSATEG00000005348	smg5	99	67.410	ENSRBIG00000027428	SMG5	99	65.964	Rhinopithecus_bieti
ENSATEG00000005348	smg5	99	67.313	ENSRROG00000030035	SMG5	99	65.868	Rhinopithecus_roxellana
ENSATEG00000005348	smg5	99	67.313	ENSSBOG00000033339	SMG5	99	65.896	Saimiri_boliviensis_boliviensis
ENSATEG00000005348	smg5	98	66.831	ENSSHAG00000014163	SMG5	100	64.591	Sarcophilus_harrisii
ENSATEG00000005348	smg5	75	37.436	ENSSHAG00000000561	-	89	36.804	Sarcophilus_harrisii
ENSATEG00000005348	smg5	57	35.294	ENSSHAG00000000935	-	86	35.849	Sarcophilus_harrisii
ENSATEG00000005348	smg5	76	41.133	ENSSHAG00000009572	-	87	37.838	Sarcophilus_harrisii
ENSATEG00000005348	smg5	100	80.019	ENSSFOG00015024175	smg5	100	79.576	Scleropages_formosus
ENSATEG00000005348	smg5	100	90.400	ENSSMAG00000013059	smg5	100	90.409	Scophthalmus_maximus
ENSATEG00000005348	smg5	100	91.784	ENSSDUG00000007122	smg5	100	91.873	Seriola_dumerili
ENSATEG00000005348	smg5	100	91.667	ENSSLDG00000011418	smg5	100	92.199	Seriola_lalandi_dorsalis
ENSATEG00000005348	smg5	85	70.144	ENSSARG00000012484	SMG5	94	70.144	Sorex_araneus
ENSATEG00000005348	smg5	94	64.776	ENSSPUG00000002260	SMG5	100	64.641	Sphenodon_punctatus
ENSATEG00000005348	smg5	100	90.708	ENSSPAG00000014266	smg5	100	91.512	Stegastes_partitus
ENSATEG00000005348	smg5	99	51.949	ENSSSCG00000039308	-	99	51.650	Sus_scrofa
ENSATEG00000005348	smg5	99	66.893	ENSSSCG00000006490	-	100	65.567	Sus_scrofa
ENSATEG00000005348	smg5	99	68.340	ENSTGUG00000003748	-	99	67.406	Taeniopygia_guttata
ENSATEG00000005348	smg5	100	81.714	ENSTRUG00000012580	smg5	100	81.272	Takifugu_rubripes
ENSATEG00000005348	smg5	99	82.854	ENSTNIG00000010303	smg5	99	81.627	Tetraodon_nigroviridis
ENSATEG00000005348	smg5	57	84.729	ENSTBEG00000002777	SMG5	58	84.729	Tupaia_belangeri
ENSATEG00000005348	smg5	99	63.311	ENSTTRG00000001401	SMG5	99	62.331	Tursiops_truncatus
ENSATEG00000005348	smg5	99	65.759	ENSUAMG00000013721	SMG5	99	65.534	Ursus_americanus
ENSATEG00000005348	smg5	92	74.272	ENSUMAG00000018041	SMG5	98	73.697	Ursus_maritimus
ENSATEG00000005348	smg5	92	71.287	ENSVPAG00000009446	SMG5	99	58.169	Vicugna_pacos
ENSATEG00000005348	smg5	99	66.569	ENSVVUG00000005887	SMG5	99	65.924	Vulpes_vulpes
ENSATEG00000005348	smg5	77	58.570	ENSXETG00000033791	SMG5	99	56.646	Xenopus_tropicalis
ENSATEG00000005348	smg5	91	90.811	ENSXCOG00000004379	smg5	100	90.811	Xiphophorus_couchianus
ENSATEG00000005348	smg5	100	86.019	ENSXMAG00000013499	smg5	100	85.943	Xiphophorus_maculatus