EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSATEG00000006483 (Gene tree)
Gene ID: 113169631
Gene Symbol: smg6
Alias: si:dkey-16f21.2
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Anabas_testudineus
Status: putative
Strand: Plus strand
Length: 13708 bases
Position: chrOOHO01000006.1:14650846-14664553
Accession: 113169631
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSATEP00000009207	EST1	PF10374.9	7.1e-16	1	1
ENSATEP00000009207	EST1_DNA_bind	PF10373.9	3.2e-58	1	1
ENSATEP00000009207	PIN_4	PF13638.6	4.3e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSATET00000009367	-	7006	XM_026371203	ENSATEP00000009207	1667 (aa)	XP_026226988	UPI000E463964

Gene Model

Click here to download ENSATEG00000006483's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSATEG00000006483's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSATEG00000006483	smg6	73	55.547	ENSG00000070366	SMG6	100	58.684	Homo_sapiens
ENSATEG00000006483	smg6	100	78.354	ENSAPOG00000019448	smg6	100	78.593	Acanthochromis_polyacanthus
ENSATEG00000006483	smg6	73	55.418	ENSAMEG00000007632	SMG6	83	55.286	Ailuropoda_melanoleuca
ENSATEG00000006483	smg6	93	74.791	ENSACIG00000012997	smg6	100	74.662	Amphilophus_citrinellus
ENSATEG00000006483	smg6	100	79.070	ENSAOCG00000002630	smg6	100	79.428	Amphiprion_ocellaris
ENSATEG00000006483	smg6	100	78.772	ENSAPEG00000019101	smg6	100	79.129	Amphiprion_percula
ENSATEG00000006483	smg6	65	48.923	ENSACAG00000011783	SMG6	86	48.936	Anolis_carolinensis
ENSATEG00000006483	smg6	73	55.286	ENSANAG00000035760	SMG6	83	55.199	Aotus_nancymaae
ENSATEG00000006483	smg6	100	75.194	ENSACLG00000005288	smg6	100	76.463	Astatotilapia_calliptera
ENSATEG00000006483	smg6	79	68.835	ENSAMXG00000017326	smg6	90	67.573	Astyanax_mexicanus
ENSATEG00000006483	smg6	73	55.417	ENSBTAG00000000267	SMG6	85	55.127	Bos_taurus
ENSATEG00000006483	smg6	73	54.969	ENSCJAG00000001820	SMG6	83	55.286	Callithrix_jacchus
ENSATEG00000006483	smg6	76	53.788	ENSCAFG00000019260	SMG6	87	53.783	Canis_familiaris
ENSATEG00000006483	smg6	76	53.788	ENSCAFG00020009770	SMG6	87	53.783	Canis_lupus_dingo
ENSATEG00000006483	smg6	73	55.469	ENSCHIG00000021998	SMG6	83	55.442	Capra_hircus
ENSATEG00000006483	smg6	73	54.531	ENSTSYG00000003406	SMG6	100	58.318	Carlito_syrichta
ENSATEG00000006483	smg6	69	51.613	ENSCAPG00000016197	SMG6	84	52.727	Cavia_aperea
ENSATEG00000006483	smg6	75	53.217	ENSCPOG00000014878	SMG6	90	59.735	Cavia_porcellus
ENSATEG00000006483	smg6	74	53.940	ENSCCAG00000035801	SMG6	84	54.314	Cebus_capucinus
ENSATEG00000006483	smg6	73	54.934	ENSCATG00000031956	SMG6	83	55.043	Cercocebus_atys
ENSATEG00000006483	smg6	75	53.513	ENSCLAG00000006748	SMG6	84	60.377	Chinchilla_lanigera
ENSATEG00000006483	smg6	73	55.089	ENSCSAG00000013800	SMG6	83	55.199	Chlorocebus_sabaeus
ENSATEG00000006483	smg6	99	52.968	ENSCPBG00000020369	SMG6	98	53.782	Chrysemys_picta_bellii
ENSATEG00000006483	smg6	90	48.540	ENSCANG00000031764	SMG6	100	59.049	Colobus_angolensis_palliatus
ENSATEG00000006483	smg6	73	50.310	ENSCGRG00000007782	Smg6	84	51.334	Cricetulus_griseus_crigri
ENSATEG00000006483	smg6	100	70.240	ENSCSEG00000012757	smg6	100	70.156	Cynoglossus_semilaevis
ENSATEG00000006483	smg6	100	68.314	ENSCVAG00000012789	smg6	100	68.033	Cyprinodon_variegatus
ENSATEG00000006483	smg6	100	56.054	ENSDARG00000100481	smg6	100	54.465	Danio_rerio
ENSATEG00000006483	smg6	73	54.630	ENSDNOG00000048283	SMG6	83	54.248	Dasypus_novemcinctus
ENSATEG00000006483	smg6	75	50.605	ENSDORG00000016614	Smg6	84	60.849	Dipodomys_ordii
ENSATEG00000006483	smg6	69	90.000	ENSETEG00000016790	SMG6	79	90.000	Echinops_telfairi
ENSATEG00000006483	smg6	58	47.410	ENSEBUG00000005059	smg6	61	47.410	Eptatretus_burgeri
ENSATEG00000006483	smg6	73	55.504	ENSEASG00005009318	SMG6	83	55.808	Equus_asinus_asinus
ENSATEG00000006483	smg6	73	55.736	ENSECAG00000006519	SMG6	83	56.044	Equus_caballus
ENSATEG00000006483	smg6	73	46.885	ENSEEUG00000003493	SMG6	84	47.352	Erinaceus_europaeus
ENSATEG00000006483	smg6	97	64.702	ENSELUG00000005934	smg6	95	69.088	Esox_lucius
ENSATEG00000006483	smg6	73	55.418	ENSFCAG00000028817	SMG6	83	55.364	Felis_catus
ENSATEG00000006483	smg6	77	54.211	ENSFALG00000006538	SMG6	88	53.910	Ficedula_albicollis
ENSATEG00000006483	smg6	73	54.454	ENSFDAG00000015106	SMG6	84	60.849	Fukomys_damarensis
ENSATEG00000006483	smg6	100	68.713	ENSFHEG00000013282	smg6	100	69.029	Fundulus_heteroclitus
ENSATEG00000006483	smg6	76	53.673	ENSGALG00000003108	SMG6	81	55.091	Gallus_gallus
ENSATEG00000006483	smg6	100	70.024	ENSGAFG00000000379	smg6	100	69.935	Gambusia_affinis
ENSATEG00000006483	smg6	82	82.857	ENSGACG00000020521	smg6	98	82.857	Gasterosteus_aculeatus
ENSATEG00000006483	smg6	73	54.239	ENSGAGG00000025617	SMG6	84	54.275	Gopherus_agassizii
ENSATEG00000006483	smg6	73	54.779	ENSGGOG00000017156	SMG6	83	55.043	Gorilla_gorilla
ENSATEG00000006483	smg6	100	75.432	ENSHBUG00000021311	smg6	100	75.671	Haplochromis_burtoni
ENSATEG00000006483	smg6	75	54.056	ENSHGLG00000012882	SMG6	84	60.377	Heterocephalus_glaber_female
ENSATEG00000006483	smg6	75	53.887	ENSHGLG00100017815	SMG6	84	60.377	Heterocephalus_glaber_male
ENSATEG00000006483	smg6	65	68.962	ENSHCOG00000008761	smg6	84	68.704	Hippocampus_comes
ENSATEG00000006483	smg6	100	53.419	ENSIPUG00000012493	smg6	100	52.896	Ictalurus_punctatus
ENSATEG00000006483	smg6	57	50.797	ENSJJAG00000015367	Smg6	75	51.016	Jaculus_jaculus
ENSATEG00000006483	smg6	100	72.537	ENSKMAG00000000279	smg6	100	72.657	Kryptolebias_marmoratus
ENSATEG00000006483	smg6	100	75.943	ENSLBEG00000002184	smg6	100	75.943	Labrus_bergylta
ENSATEG00000006483	smg6	66	64.349	ENSLOCG00000006448	smg6	99	55.166	Lepisosteus_oculatus
ENSATEG00000006483	smg6	73	54.292	ENSLAFG00000001261	SMG6	83	54.496	Loxodonta_africana
ENSATEG00000006483	smg6	73	55.089	ENSMFAG00000003394	SMG6	83	55.199	Macaca_fascicularis
ENSATEG00000006483	smg6	73	54.701	ENSMMUG00000023161	SMG6	83	54.808	Macaca_mulatta
ENSATEG00000006483	smg6	73	52.767	ENSMNEG00000044592	SMG6	86	52.280	Macaca_nemestrina
ENSATEG00000006483	smg6	86	60.281	ENSMLEG00000029353	SMG6	84	60.035	Mandrillus_leucophaeus
ENSATEG00000006483	smg6	100	80.574	ENSMAMG00000020119	smg6	100	81.274	Mastacembelus_armatus
ENSATEG00000006483	smg6	100	75.075	ENSMZEG00005024736	smg6	100	75.253	Maylandia_zebra
ENSATEG00000006483	smg6	55	50.052	ENSMGAG00000005401	-	81	50.634	Meleagris_gallopavo
ENSATEG00000006483	smg6	73	55.047	ENSMICG00000012913	SMG6	83	55.477	Microcebus_murinus
ENSATEG00000006483	smg6	100	69.695	ENSMMOG00000010883	smg6	100	69.874	Mola_mola
ENSATEG00000006483	smg6	73	55.349	ENSMODG00000010622	SMG6	83	54.786	Monodelphis_domestica
ENSATEG00000006483	smg6	100	78.900	ENSMALG00000001106	smg6	100	78.900	Monopterus_albus
ENSATEG00000006483	smg6	73	54.694	MGP_CAROLIEiJ_G0016729	Smg6	98	63.315	Mus_caroli
ENSATEG00000006483	smg6	73	54.560	ENSMUSG00000038290	Smg6	97	63.636	Mus_musculus
ENSATEG00000006483	smg6	73	54.277	MGP_PahariEiJ_G0017866	Smg6	96	63.866	Mus_pahari
ENSATEG00000006483	smg6	73	54.482	MGP_SPRETEiJ_G0017572	Smg6	98	63.361	Mus_spretus
ENSATEG00000006483	smg6	76	54.018	ENSMPUG00000013046	SMG6	83	55.208	Mustela_putorius_furo
ENSATEG00000006483	smg6	73	55.339	ENSMLUG00000005739	SMG6	83	55.294	Myotis_lucifugus
ENSATEG00000006483	smg6	76	53.278	ENSNGAG00000007287	Smg6	84	61.321	Nannospalax_galili
ENSATEG00000006483	smg6	98	72.127	ENSNBRG00000009511	smg6	99	74.951	Neolamprologus_brichardi
ENSATEG00000006483	smg6	73	55.399	ENSNLEG00000017171	SMG6	100	58.684	Nomascus_leucogenys
ENSATEG00000006483	smg6	75	54.580	ENSMEUG00000015804	SMG6	87	54.391	Notamacropus_eugenii
ENSATEG00000006483	smg6	50	62.105	ENSOPRG00000000579	SMG6	82	62.105	Ochotona_princeps
ENSATEG00000006483	smg6	77	46.731	ENSODEG00000008038	SMG6	81	53.757	Octodon_degus
ENSATEG00000006483	smg6	100	75.492	ENSONIG00000005594	smg6	100	79.234	Oreochromis_niloticus
ENSATEG00000006483	smg6	76	53.737	ENSOCUG00000013018	SMG6	86	53.974	Oryctolagus_cuniculus
ENSATEG00000006483	smg6	100	68.152	ENSORLG00000003317	smg6	100	68.549	Oryzias_latipes
ENSATEG00000006483	smg6	100	68.195	ENSORLG00020015343	smg6	100	68.274	Oryzias_latipes_hni
ENSATEG00000006483	smg6	100	68.512	ENSORLG00015020454	smg6	100	68.750	Oryzias_latipes_hsok
ENSATEG00000006483	smg6	100	67.619	ENSOMEG00000010838	smg6	100	68.452	Oryzias_melastigma
ENSATEG00000006483	smg6	73	55.321	ENSOGAG00000004483	SMG6	83	55.105	Otolemur_garnettii
ENSATEG00000006483	smg6	73	55.547	ENSOARG00000015076	SMG6	83	55.521	Ovis_aries
ENSATEG00000006483	smg6	73	54.814	ENSPPAG00000043296	SMG6	86	54.504	Pan_paniscus
ENSATEG00000006483	smg6	73	55.418	ENSPPRG00000014581	SMG6	83	55.364	Panthera_pardus
ENSATEG00000006483	smg6	73	55.418	ENSPTIG00000008925	SMG6	100	58.867	Panthera_tigris_altaica
ENSATEG00000006483	smg6	73	55.074	ENSPTRG00000008544	SMG6	100	58.684	Pan_troglodytes
ENSATEG00000006483	smg6	73	55.012	ENSPANG00000024588	SMG6	86	54.167	Papio_anubis
ENSATEG00000006483	smg6	71	50.485	ENSPSIG00000006660	SMG6	86	51.338	Pelodiscus_sinensis
ENSATEG00000006483	smg6	95	80.272	ENSPMGG00000000844	smg6	99	79.728	Periophthalmus_magnuspinnatus
ENSATEG00000006483	smg6	73	54.714	ENSPEMG00000020707	Smg6	85	61.792	Peromyscus_maniculatus_bairdii
ENSATEG00000006483	smg6	100	70.995	ENSPFOG00000012035	smg6	97	75.486	Poecilia_formosa
ENSATEG00000006483	smg6	100	70.918	ENSPLAG00000017660	smg6	100	70.536	Poecilia_latipinna
ENSATEG00000006483	smg6	100	70.935	ENSPMEG00000000258	smg6	100	70.655	Poecilia_mexicana
ENSATEG00000006483	smg6	100	70.220	ENSPREG00000010066	smg6	100	69.780	Poecilia_reticulata
ENSATEG00000006483	smg6	73	50.658	ENSPPYG00000007790	SMG6	83	51.402	Pongo_abelii
ENSATEG00000006483	smg6	71	60.317	ENSPCAG00000000552	SMG6	85	51.775	Procavia_capensis
ENSATEG00000006483	smg6	73	55.286	ENSPCOG00000020925	SMG6	83	55.199	Propithecus_coquereli
ENSATEG00000006483	smg6	73	51.006	ENSPVAG00000002159	SMG6	83	51.613	Pteropus_vampyrus
ENSATEG00000006483	smg6	93	72.447	ENSPNYG00000024151	smg6	99	74.560	Pundamilia_nyererei
ENSATEG00000006483	smg6	89	59.785	ENSPNAG00000015480	smg6	100	52.225	Pygocentrus_nattereri
ENSATEG00000006483	smg6	73	54.096	ENSRNOG00000003041	Smg6	97	63.315	Rattus_norvegicus
ENSATEG00000006483	smg6	75	54.107	ENSRBIG00000024746	SMG6	86	54.470	Rhinopithecus_bieti
ENSATEG00000006483	smg6	73	54.977	ENSRROG00000030423	SMG6	100	59.049	Rhinopithecus_roxellana
ENSATEG00000006483	smg6	73	54.503	ENSSBOG00000022518	SMG6	83	53.245	Saimiri_boliviensis_boliviensis
ENSATEG00000006483	smg6	75	54.587	ENSSHAG00000010045	SMG6	86	54.366	Sarcophilus_harrisii
ENSATEG00000006483	smg6	94	54.442	ENSSFOG00015005436	smg6	91	55.392	Scleropages_formosus
ENSATEG00000006483	smg6	100	78.708	ENSSMAG00000019777	smg6	100	78.708	Scophthalmus_maximus
ENSATEG00000006483	smg6	100	82.915	ENSSDUG00000016412	smg6	100	82.975	Seriola_dumerili
ENSATEG00000006483	smg6	91	82.731	ENSSLDG00000020747	smg6	98	82.797	Seriola_lalandi_dorsalis
ENSATEG00000006483	smg6	77	53.555	ENSSPUG00000007152	SMG6	87	53.343	Sphenodon_punctatus
ENSATEG00000006483	smg6	100	79.356	ENSSPAG00000015633	smg6	100	79.356	Stegastes_partitus
ENSATEG00000006483	smg6	73	55.685	ENSSSCG00000017826	SMG6	83	55.869	Sus_scrofa
ENSATEG00000006483	smg6	77	53.104	ENSTGUG00000005836	SMG6	88	52.919	Taeniopygia_guttata
ENSATEG00000006483	smg6	91	70.099	ENSTRUG00000000358	smg6	99	70.033	Takifugu_rubripes
ENSATEG00000006483	smg6	91	77.901	ENSTNIG00000016164	smg6	100	78.103	Tetraodon_nigroviridis
ENSATEG00000006483	smg6	73	52.208	ENSTBEG00000011424	SMG6	83	52.160	Tupaia_belangeri
ENSATEG00000006483	smg6	65	56.757	ENSTTRG00000001175	SMG6	74	56.553	Tursiops_truncatus
ENSATEG00000006483	smg6	73	55.401	ENSUAMG00000025152	SMG6	85	55.191	Ursus_americanus
ENSATEG00000006483	smg6	73	55.418	ENSUMAG00000009306	SMG6	85	55.286	Ursus_maritimus
ENSATEG00000006483	smg6	62	95.833	ENSVPAG00000000225	SMG6	70	95.833	Vicugna_pacos
ENSATEG00000006483	smg6	76	53.713	ENSVVUG00000021727	SMG6	84	55.044	Vulpes_vulpes
ENSATEG00000006483	smg6	65	54.865	ENSXETG00000023799	SMG6	74	54.155	Xenopus_tropicalis
ENSATEG00000006483	smg6	98	68.670	ENSXCOG00000009867	smg6	99	67.697	Xiphophorus_couchianus
ENSATEG00000006483	smg6	100	70.588	ENSXMAG00000010321	smg6	100	69.935	Xiphophorus_maculatus