EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSATEG00000006924 (Gene tree)
Gene ID: 113155007
Gene Symbol: prdm1b
Alias: -
Full Name: PR domain zinc finger protein 1-like
Gene Type: protein_coding
Species: Anabas_testudineus
Status: putative
Strand: Plus strand
Length: 10340 bases
Position: chrOOHO01000017.1:29594078-29604417
Accession: 113155007
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSATEP00000009889	zf-C2H2	PF00096.26	4.5e-19	1	3
ENSATEP00000009889	zf-C2H2	PF00096.26	4.5e-19	2	3
ENSATEP00000009889	zf-C2H2	PF00096.26	4.5e-19	3	3
ENSATEP00000009893	zf-C2H2	PF00096.26	4.9e-19	1	3
ENSATEP00000009893	zf-C2H2	PF00096.26	4.9e-19	2	3
ENSATEP00000009893	zf-C2H2	PF00096.26	4.9e-19	3	3
ENSATEP00000009889	zf-met	PF12874.7	2e-05	1	1
ENSATEP00000009893	zf-met	PF12874.7	2.1e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSATET00000010069	-	3796	-	ENSATEP00000009893	625 (aa)	XP_026205249	UPI000E460F11
ENSATET00000010065	-	1863	-	ENSATEP00000009889	620 (aa)	-	-
ENSATET00000010028	-	1363	-	ENSATEP00000009852	454 (aa)	-	-

Gene Model

Click here to download ENSATEG00000006924's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSATEG00000006924's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSATEG00000006924	prdm1b	54	63.380	ENSATEG00000021017	prdm1a	59	63.380

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSATEG00000006924	prdm1b	96	37.946	ENSAPOG00000014135	-	81	37.870	Acanthochromis_polyacanthus
ENSATEG00000006924	prdm1b	73	71.895	ENSAPOG00000022084	prdm1b	95	72.331	Acanthochromis_polyacanthus
ENSATEG00000006924	prdm1b	97	79.242	ENSACIG00000014426	prdm1b	98	79.242	Amphilophus_citrinellus
ENSATEG00000006924	prdm1b	94	76.410	ENSAOCG00000002230	prdm1b	98	76.239	Amphiprion_ocellaris
ENSATEG00000006924	prdm1b	100	75.840	ENSAPEG00000019826	prdm1b	100	75.680	Amphiprion_percula
ENSATEG00000006924	prdm1b	93	84.111	ENSACLG00000005487	prdm1b	90	84.111	Astatotilapia_calliptera
ENSATEG00000006924	prdm1b	65	60.563	ENSCSEG00000009707	prdm1a	58	60.563	Cynoglossus_semilaevis
ENSATEG00000006924	prdm1b	87	52.508	ENSCVAG00000019081	prdm1a	61	63.380	Cyprinodon_variegatus
ENSATEG00000006924	prdm1b	99	76.613	ENSCVAG00000016746	prdm1b	99	76.414	Cyprinodon_variegatus
ENSATEG00000006924	prdm1b	100	77.866	ENSFHEG00000019848	prdm1b	100	76.752	Fundulus_heteroclitus
ENSATEG00000006924	prdm1b	96	78.878	ENSGAFG00000016191	prdm1b	96	79.208	Gambusia_affinis
ENSATEG00000006924	prdm1b	92	72.995	ENSGACG00000002716	prdm1b	86	72.340	Gasterosteus_aculeatus
ENSATEG00000006924	prdm1b	93	84.948	ENSHBUG00000001475	prdm1b	95	84.948	Haplochromis_burtoni
ENSATEG00000006924	prdm1b	100	76.236	ENSHCOG00000003617	prdm1b	100	75.439	Hippocampus_comes
ENSATEG00000006924	prdm1b	86	72.727	ENSIPUG00000013740	prdm1b	92	54.146	Ictalurus_punctatus
ENSATEG00000006924	prdm1b	92	73.333	ENSKMAG00000011218	prdm1b	91	72.089	Kryptolebias_marmoratus
ENSATEG00000006924	prdm1b	53	64.789	ENSKMAG00000017597	prdm1a	62	64.789	Kryptolebias_marmoratus
ENSATEG00000006924	prdm1b	88	38.934	ENSKMAG00000016247	-	78	37.730	Kryptolebias_marmoratus
ENSATEG00000006924	prdm1b	100	86.169	ENSLBEG00000020955	prdm1b	100	84.897	Labrus_bergylta
ENSATEG00000006924	prdm1b	80	74.648	ENSLOCG00000004978	prdm1b	64	74.648	Lepisosteus_oculatus
ENSATEG00000006924	prdm1b	100	82.419	ENSMZEG00005026361	prdm1b	95	82.419	Maylandia_zebra
ENSATEG00000006924	prdm1b	94	83.993	ENSMMOG00000013458	prdm1b	96	83.649	Mola_mola
ENSATEG00000006924	prdm1b	97	81.054	ENSMALG00000011410	prdm1b	99	80.890	Monopterus_albus
ENSATEG00000006924	prdm1b	91	92.857	ENSONIG00000013583	prdm1b	78	92.857	Oreochromis_niloticus
ENSATEG00000006924	prdm1b	85	37.604	ENSONIG00000014709	-	76	36.693	Oreochromis_niloticus
ENSATEG00000006924	prdm1b	99	68.019	ENSORLG00000010025	prdm1b	99	67.395	Oryzias_latipes
ENSATEG00000006924	prdm1b	91	69.625	ENSORLG00015009022	prdm1b	92	69.192	Oryzias_latipes_hsok
ENSATEG00000006924	prdm1b	99	48.232	ENSPKIG00000022335	prdm1b	73	77.465	Paramormyrops_kingsleyae
ENSATEG00000006924	prdm1b	87	71.248	ENSPFOG00000003103	prdm1b	55	86.798	Poecilia_formosa
ENSATEG00000006924	prdm1b	99	80.349	ENSPLAG00000018491	prdm1b	99	80.349	Poecilia_latipinna
ENSATEG00000006924	prdm1b	100	81.717	ENSPMEG00000007869	prdm1b	100	81.717	Poecilia_mexicana
ENSATEG00000006924	prdm1b	99	79.905	ENSPREG00000011327	prdm1b	99	79.430	Poecilia_reticulata
ENSATEG00000006924	prdm1b	74	64.789	ENSPVAG00000011732	PRDM1	60	64.789	Pteropus_vampyrus
ENSATEG00000006924	prdm1b	92	60.664	ENSSFOG00015021896	prdm1b	79	60.315	Scleropages_formosus
ENSATEG00000006924	prdm1b	100	85.350	ENSSMAG00000020467	prdm1b	100	85.350	Scophthalmus_maximus
ENSATEG00000006924	prdm1b	92	36.858	ENSSMAG00000017518	-	78	37.077	Scophthalmus_maximus
ENSATEG00000006924	prdm1b	83	52.985	ENSSDUG00000000524	-	61	52.985	Seriola_dumerili
ENSATEG00000006924	prdm1b	100	89.968	ENSSDUG00000020610	prdm1b	100	89.968	Seriola_dumerili
ENSATEG00000006924	prdm1b	99	89.440	ENSSLDG00000021973	prdm1b	99	89.091	Seriola_lalandi_dorsalis
ENSATEG00000006924	prdm1b	100	80.640	ENSSPAG00000000803	prdm1b	100	81.150	Stegastes_partitus
ENSATEG00000006924	prdm1b	88	40.097	ENSSPAG00000009830	-	75	39.677	Stegastes_partitus
ENSATEG00000006924	prdm1b	95	80.236	ENSXCOG00000018920	prdm1b	84	79.899	Xiphophorus_couchianus
ENSATEG00000006924	prdm1b	99	74.057	ENSXMAG00000016765	prdm1b	95	77.513	Xiphophorus_maculatus