EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSATEG00000007428 (Gene tree)
Gene ID: 113166881
Gene Symbol: pabpc1l
Alias: fi20g03|wu:fi20g03|zgc:55855
Full Name: poly(A) binding protein%2C cytoplasmic 1-like
Gene Type: protein_coding
Species: Anabas_testudineus
Status: putative
Strand: Plus strand
Length: 10159 bases
Position: chrOOHO01000023.1:16507396-16517554
Accession: ZDB-GENE-030131-5836
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSATEP00000010607	PABP	PF00658.18	6.5e-29	1	1
ENSATEP00000010607	RRM_5	PF13893.6	2.5e-08	1	2
ENSATEP00000010607	RRM_5	PF13893.6	2.5e-08	2	2
ENSATEP00000010607	RRM_1	PF00076.22	1.7e-89	1	4
ENSATEP00000010607	RRM_1	PF00076.22	1.7e-89	2	4
ENSATEP00000010607	RRM_1	PF00076.22	1.7e-89	3	4
ENSATEP00000010607	RRM_1	PF00076.22	1.7e-89	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSATET00000010791	-	1839	-	ENSATEP00000010607	612 (aa)	-	-

Gene Model

Click here to download ENSATEG00000007428's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSATEG00000007428's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSATEG00000007428	pabpc1l	52	34.884	ENSATEG00000008884	celf3a	72	34.884
ENSATEG00000007428	pabpc1l	54	30.263	ENSATEG00000016948	rbm45	58	30.872
ENSATEG00000007428	pabpc1l	50	37.209	ENSATEG00000002283	si:dkey-205h23.2	64	35.789
ENSATEG00000007428	pabpc1l	100	66.986	ENSATEG00000007402	pabpc4	98	66.826
ENSATEG00000007428	pabpc1l	99	69.146	ENSATEG00000024852	pabpc1a	98	69.194
ENSATEG00000007428	pabpc1l	99	70.270	ENSATEG00000012917	pabpc1b	98	70.111
ENSATEG00000007428	pabpc1l	59	38.202	ENSATEG00000007662	elavl1a	88	38.202
ENSATEG00000007428	pabpc1l	60	33.766	ENSATEG00000006741	-	80	30.841
ENSATEG00000007428	pabpc1l	69	31.690	ENSATEG00000007000	rbm19	63	31.690
ENSATEG00000007428	pabpc1l	59	30.682	ENSATEG00000014593	-	68	30.682

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSATEG00000007428	pabpc1l	99	69.144	ENSG00000101104	PABPC1L	98	76.543	Homo_sapiens
ENSATEG00000007428	pabpc1l	99	82.476	ENSAPOG00000010842	pabpc1l	99	82.476	Acanthochromis_polyacanthus
ENSATEG00000007428	pabpc1l	99	65.367	ENSAMEG00000004099	PABPC1L	100	65.116	Ailuropoda_melanoleuca
ENSATEG00000007428	pabpc1l	99	92.399	ENSACIG00000021004	-	99	95.238	Amphilophus_citrinellus
ENSATEG00000007428	pabpc1l	100	84.261	ENSAOCG00000006167	-	100	84.420	Amphiprion_ocellaris
ENSATEG00000007428	pabpc1l	100	85.900	ENSAPEG00000010558	-	99	90.698	Amphiprion_percula
ENSATEG00000007428	pabpc1l	98	71.014	ENSAPLG00000008415	PABPC1L	99	70.813	Anas_platyrhynchos
ENSATEG00000007428	pabpc1l	99	73.693	ENSACAG00000011841	PABPC1L	99	73.693	Anolis_carolinensis
ENSATEG00000007428	pabpc1l	99	68.659	ENSANAG00000026826	PABPC1L	99	68.659	Aotus_nancymaae
ENSATEG00000007428	pabpc1l	100	88.553	ENSACLG00000024791	pabpc1l	100	87.917	Astatotilapia_calliptera
ENSATEG00000007428	pabpc1l	100	80.190	ENSAMXG00000013552	pabpc1l	100	79.556	Astyanax_mexicanus
ENSATEG00000007428	pabpc1l	63	87.500	ENSBTAG00000055300	-	100	87.500	Bos_taurus
ENSATEG00000007428	pabpc1l	66	63.669	ENSBTAG00000016849	PABPC1L	85	63.669	Bos_taurus
ENSATEG00000007428	pabpc1l	99	68.821	ENSCJAG00000017628	PABPC1L	99	68.821	Callithrix_jacchus
ENSATEG00000007428	pabpc1l	60	80.460	ENSCJAG00000038506	-	100	80.460	Callithrix_jacchus
ENSATEG00000007428	pabpc1l	99	63.053	ENSCAFG00000009573	PABPC1L	80	81.013	Canis_familiaris
ENSATEG00000007428	pabpc1l	99	67.961	ENSCAFG00020013828	PABPC1L	99	67.961	Canis_lupus_dingo
ENSATEG00000007428	pabpc1l	98	68.482	ENSCHIG00000025759	PABPC1L	91	68.482	Capra_hircus
ENSATEG00000007428	pabpc1l	99	68.336	ENSTSYG00000006645	PABPC1L	99	68.336	Carlito_syrichta
ENSATEG00000007428	pabpc1l	98	63.853	ENSCAPG00000014519	PABPC1L	99	63.388	Cavia_aperea
ENSATEG00000007428	pabpc1l	99	65.539	ENSCPOG00000013633	PABPC1L	99	65.539	Cavia_porcellus
ENSATEG00000007428	pabpc1l	99	68.013	ENSCCAG00000023338	PABPC1L	99	68.659	Cebus_capucinus
ENSATEG00000007428	pabpc1l	99	69.467	ENSCATG00000034065	PABPC1L	99	69.467	Cercocebus_atys
ENSATEG00000007428	pabpc1l	99	64.830	ENSCLAG00000005298	PABPC1L	99	65.478	Chinchilla_lanigera
ENSATEG00000007428	pabpc1l	99	69.305	ENSCSAG00000014242	PABPC1L	99	69.305	Chlorocebus_sabaeus
ENSATEG00000007428	pabpc1l	54	84.733	ENSCPBG00000007810	-	91	84.733	Chrysemys_picta_bellii
ENSATEG00000007428	pabpc1l	72	79.412	ENSCPBG00000017755	-	99	79.412	Chrysemys_picta_bellii
ENSATEG00000007428	pabpc1l	84	51.215	ENSCING00000002796	-	97	51.008	Ciona_intestinalis
ENSATEG00000007428	pabpc1l	99	65.217	ENSCSAVG00000004246	-	94	77.500	Ciona_savignyi
ENSATEG00000007428	pabpc1l	99	56.542	ENSCSAVG00000003102	-	100	83.893	Ciona_savignyi
ENSATEG00000007428	pabpc1l	99	66.134	ENSCANG00000037530	PABPC1L	99	66.240	Colobus_angolensis_palliatus
ENSATEG00000007428	pabpc1l	99	62.201	ENSCGRG00001021938	Pabpc1l	99	62.201	Cricetulus_griseus_chok1gshd
ENSATEG00000007428	pabpc1l	99	62.201	ENSCGRG00000007946	Pabpc1l	99	62.201	Cricetulus_griseus_crigri
ENSATEG00000007428	pabpc1l	99	78.033	ENSCSEG00000021295	pabpc1l	99	77.705	Cynoglossus_semilaevis
ENSATEG00000007428	pabpc1l	100	88.103	ENSCVAG00000015943	-	99	98.473	Cyprinodon_variegatus
ENSATEG00000007428	pabpc1l	99	79.140	ENSDARG00000002597	pabpc1l	88	95.385	Danio_rerio
ENSATEG00000007428	pabpc1l	99	68.669	ENSDNOG00000048450	PABPC1L	99	68.669	Dasypus_novemcinctus
ENSATEG00000007428	pabpc1l	99	66.505	ENSDORG00000001067	Pabpc1l	99	66.505	Dipodomys_ordii
ENSATEG00000007428	pabpc1l	95	76.829	ENSETEG00000009969	PABPC1L	72	76.829	Echinops_telfairi
ENSATEG00000007428	pabpc1l	63	85.119	ENSEASG00005023408	-	100	85.119	Equus_asinus_asinus
ENSATEG00000007428	pabpc1l	51	75.316	ENSEASG00005023407	-	64	75.316	Equus_asinus_asinus
ENSATEG00000007428	pabpc1l	67	65.236	ENSECAG00000040139	-	84	65.236	Equus_caballus
ENSATEG00000007428	pabpc1l	99	66.885	ENSEEUG00000005978	PABPC1L	99	66.885	Erinaceus_europaeus
ENSATEG00000007428	pabpc1l	100	82.437	ENSELUG00000001811	pabpc1l	100	81.487	Esox_lucius
ENSATEG00000007428	pabpc1l	99	69.530	ENSFCAG00000011692	PABPC1L	99	69.530	Felis_catus
ENSATEG00000007428	pabpc1l	86	72.285	ENSFALG00000005372	PABPC1L	87	72.937	Ficedula_albicollis
ENSATEG00000007428	pabpc1l	99	65.196	ENSFDAG00000008291	PABPC1L	99	64.706	Fukomys_damarensis
ENSATEG00000007428	pabpc1l	100	88.141	ENSFHEG00000003398	pabpc1l	100	87.500	Fundulus_heteroclitus
ENSATEG00000007428	pabpc1l	99	82.931	ENSGMOG00000004437	pabpc1l	99	82.770	Gadus_morhua
ENSATEG00000007428	pabpc1l	96	67.065	ENSGALG00000004123	PABPC1L	99	80.048	Gallus_gallus
ENSATEG00000007428	pabpc1l	100	82.451	ENSGAFG00000021057	pabpc1l	100	81.543	Gambusia_affinis
ENSATEG00000007428	pabpc1l	99	86.443	ENSGACG00000002792	pabpc1l	100	86.284	Gasterosteus_aculeatus
ENSATEG00000007428	pabpc1l	99	73.365	ENSGAGG00000000589	PABPC1L	98	73.046	Gopherus_agassizii
ENSATEG00000007428	pabpc1l	99	69.144	ENSGGOG00000004584	PABPC1L	99	69.144	Gorilla_gorilla
ENSATEG00000007428	pabpc1l	100	88.553	ENSHBUG00000006134	pabpc1l	100	87.917	Haplochromis_burtoni
ENSATEG00000007428	pabpc1l	100	65.971	ENSHGLG00000008434	PABPC1L	99	65.971	Heterocephalus_glaber_female
ENSATEG00000007428	pabpc1l	59	86.517	ENSHGLG00100019506	-	100	86.517	Heterocephalus_glaber_male
ENSATEG00000007428	pabpc1l	100	65.971	ENSHGLG00100012151	PABPC1L	99	65.971	Heterocephalus_glaber_male
ENSATEG00000007428	pabpc1l	99	85.240	ENSHCOG00000009270	pabpc1l	100	84.411	Hippocampus_comes
ENSATEG00000007428	pabpc1l	60	62.644	ENSIPUG00000006760	-	88	62.644	Ictalurus_punctatus
ENSATEG00000007428	pabpc1l	60	61.453	ENSIPUG00000006780	-	85	62.644	Ictalurus_punctatus
ENSATEG00000007428	pabpc1l	100	78.447	ENSIPUG00000012602	pabpc1l	100	78.130	Ictalurus_punctatus
ENSATEG00000007428	pabpc1l	99	68.174	ENSSTOG00000003739	PABPC1L	99	68.174	Ictidomys_tridecemlineatus
ENSATEG00000007428	pabpc1l	99	53.597	ENSJJAG00000022406	Pabpc1l	99	53.597	Jaculus_jaculus
ENSATEG00000007428	pabpc1l	100	88.331	ENSKMAG00000016847	pabpc1l	100	88.169	Kryptolebias_marmoratus
ENSATEG00000007428	pabpc1l	100	88.553	ENSLBEG00000010084	pabpc1l	100	88.076	Labrus_bergylta
ENSATEG00000007428	pabpc1l	99	72.214	ENSLACG00000005762	PABPC1L	99	72.214	Latimeria_chalumnae
ENSATEG00000007428	pabpc1l	99	80.666	ENSLOCG00000007519	pabpc1l	99	80.190	Lepisosteus_oculatus
ENSATEG00000007428	pabpc1l	99	67.619	ENSLAFG00000003553	PABPC1L	100	66.984	Loxodonta_africana
ENSATEG00000007428	pabpc1l	99	69.467	ENSMFAG00000040365	PABPC1L	99	69.467	Macaca_fascicularis
ENSATEG00000007428	pabpc1l	99	68.116	ENSMNEG00000032298	PABPC1L	99	67.794	Macaca_nemestrina
ENSATEG00000007428	pabpc1l	99	69.467	ENSMLEG00000043139	PABPC1L	99	69.467	Mandrillus_leucophaeus
ENSATEG00000007428	pabpc1l	97	92.833	ENSMAMG00000011854	pabpc1l	97	92.333	Mastacembelus_armatus
ENSATEG00000007428	pabpc1l	100	88.553	ENSMZEG00005023713	pabpc1l	100	87.917	Maylandia_zebra
ENSATEG00000007428	pabpc1l	99	72.480	ENSMGAG00000003674	PABPC1L	99	72.480	Meleagris_gallopavo
ENSATEG00000007428	pabpc1l	99	60.905	ENSMOCG00000013186	Pabpc1l	99	60.905	Microtus_ochrogaster
ENSATEG00000007428	pabpc1l	99	90.468	ENSMMOG00000020574	-	99	89.822	Mola_mola
ENSATEG00000007428	pabpc1l	97	71.096	ENSMODG00000016198	PABPC1L	99	71.096	Monodelphis_domestica
ENSATEG00000007428	pabpc1l	97	89.786	ENSMALG00000021622	pabpc1l	100	89.456	Monopterus_albus
ENSATEG00000007428	pabpc1l	99	61.563	MGP_CAROLIEiJ_G0024627	Pabpc1l	99	61.760	Mus_caroli
ENSATEG00000007428	pabpc1l	99	61.836	ENSMUSG00000054582	Pabpc1l	99	62.036	Mus_musculus
ENSATEG00000007428	pabpc1l	100	61.722	MGP_PahariEiJ_G0026071	Pabpc1l	100	61.722	Mus_pahari
ENSATEG00000007428	pabpc1l	99	61.563	MGP_SPRETEiJ_G0025549	Pabpc1l	99	61.760	Mus_spretus
ENSATEG00000007428	pabpc1l	99	69.169	ENSMPUG00000017646	PABPC1L	99	69.010	Mustela_putorius_furo
ENSATEG00000007428	pabpc1l	98	65.391	ENSMLUG00000006324	PABPC1L	98	65.329	Myotis_lucifugus
ENSATEG00000007428	pabpc1l	99	63.680	ENSNGAG00000010458	Pabpc1l	99	63.680	Nannospalax_galili
ENSATEG00000007428	pabpc1l	99	94.699	ENSNBRG00000016633	pabpc1l	99	94.699	Neolamprologus_brichardi
ENSATEG00000007428	pabpc1l	90	65.636	ENSMEUG00000007905	-	89	65.636	Notamacropus_eugenii
ENSATEG00000007428	pabpc1l	99	68.174	ENSOPRG00000011846	PABPC1L	99	68.013	Ochotona_princeps
ENSATEG00000007428	pabpc1l	99	61.688	ENSODEG00000015482	PABPC1L	99	61.905	Octodon_degus
ENSATEG00000007428	pabpc1l	58	80.625	ENSODEG00000002920	-	97	80.625	Octodon_degus
ENSATEG00000007428	pabpc1l	100	88.553	ENSONIG00000017314	pabpc1l	100	87.917	Oreochromis_niloticus
ENSATEG00000007428	pabpc1l	90	62.545	ENSOANG00000015793	-	100	62.366	Ornithorhynchus_anatinus
ENSATEG00000007428	pabpc1l	99	65.842	ENSOCUG00000003005	PABPC1L	99	65.997	Oryctolagus_cuniculus
ENSATEG00000007428	pabpc1l	99	89.720	ENSORLG00000010322	pabpc1l	100	90.588	Oryzias_latipes
ENSATEG00000007428	pabpc1l	99	89.720	ENSORLG00020021193	pabpc1l	100	90.588	Oryzias_latipes_hni
ENSATEG00000007428	pabpc1l	99	89.720	ENSORLG00015017018	pabpc1l	100	89.720	Oryzias_latipes_hsok
ENSATEG00000007428	pabpc1l	100	82.371	ENSOMEG00000010789	pabpc1l	100	81.915	Oryzias_melastigma
ENSATEG00000007428	pabpc1l	99	67.516	ENSOGAG00000032999	PABPC1L	99	67.197	Otolemur_garnettii
ENSATEG00000007428	pabpc1l	99	68.780	ENSOARG00000004578	PABPC1L	99	68.780	Ovis_aries
ENSATEG00000007428	pabpc1l	99	69.305	ENSPPAG00000039677	PABPC1L	99	69.305	Pan_paniscus
ENSATEG00000007428	pabpc1l	63	67.901	ENSPPRG00000019327	-	98	67.901	Panthera_pardus
ENSATEG00000007428	pabpc1l	98	69.508	ENSPTIG00000006524	PABPC1L	99	69.508	Panthera_tigris_altaica
ENSATEG00000007428	pabpc1l	63	76.852	ENSPTRG00000013531	PABPC1L	98	76.852	Pan_troglodytes
ENSATEG00000007428	pabpc1l	99	69.467	ENSPANG00000018788	PABPC1L	99	69.467	Papio_anubis
ENSATEG00000007428	pabpc1l	100	80.223	ENSPKIG00000007322	pabpc1l	100	79.904	Paramormyrops_kingsleyae
ENSATEG00000007428	pabpc1l	53	83.969	ENSPKIG00000016810	-	93	83.969	Paramormyrops_kingsleyae
ENSATEG00000007428	pabpc1l	68	81.295	ENSPSIG00000013289	PABPC1L	99	81.295	Pelodiscus_sinensis
ENSATEG00000007428	pabpc1l	63	96.212	ENSPMGG00000023117	pabpc1l	99	96.212	Periophthalmus_magnuspinnatus
ENSATEG00000007428	pabpc1l	71	88.718	ENSPMGG00000023121	-	91	88.718	Periophthalmus_magnuspinnatus
ENSATEG00000007428	pabpc1l	99	61.851	ENSPEMG00000020671	Pabpc1l	99	61.760	Peromyscus_maniculatus_bairdii
ENSATEG00000007428	pabpc1l	100	88.673	ENSPFOG00000013241	pabpc1l	100	87.122	Poecilia_formosa
ENSATEG00000007428	pabpc1l	63	98.462	ENSPLAG00000023686	-	92	98.462	Poecilia_latipinna
ENSATEG00000007428	pabpc1l	100	87.122	ENSPLAG00000017490	-	100	86.804	Poecilia_latipinna
ENSATEG00000007428	pabpc1l	100	87.400	ENSPMEG00000007677	pabpc1l	100	86.603	Poecilia_mexicana
ENSATEG00000007428	pabpc1l	63	98.462	ENSPMEG00000009185	-	88	98.462	Poecilia_mexicana
ENSATEG00000007428	pabpc1l	67	95.134	ENSPREG00000015886	pabpc1l	99	95.134	Poecilia_reticulata
ENSATEG00000007428	pabpc1l	99	69.305	ENSPPYG00000011042	PABPC1L	99	69.305	Pongo_abelii
ENSATEG00000007428	pabpc1l	61	85.938	ENSPCAG00000011787	-	75	85.938	Procavia_capensis
ENSATEG00000007428	pabpc1l	99	69.355	ENSPCOG00000020630	PABPC1L	99	69.355	Propithecus_coquereli
ENSATEG00000007428	pabpc1l	99	67.585	ENSPVAG00000012663	PABPC1L	99	67.585	Pteropus_vampyrus
ENSATEG00000007428	pabpc1l	99	94.940	ENSPNYG00000004101	pabpc1l	99	94.940	Pundamilia_nyererei
ENSATEG00000007428	pabpc1l	100	73.333	ENSPNAG00000021248	pabpc1l	100	73.175	Pygocentrus_nattereri
ENSATEG00000007428	pabpc1l	99	62.036	ENSRNOG00000012750	Pabpc1l	99	62.080	Rattus_norvegicus
ENSATEG00000007428	pabpc1l	99	69.467	ENSRBIG00000035381	PABPC1L	99	69.467	Rhinopithecus_bieti
ENSATEG00000007428	pabpc1l	99	69.305	ENSRROG00000044498	PABPC1L	99	69.305	Rhinopithecus_roxellana
ENSATEG00000007428	pabpc1l	99	68.659	ENSSBOG00000009532	-	99	68.659	Saimiri_boliviensis_boliviensis
ENSATEG00000007428	pabpc1l	98	64.300	ENSSHAG00000011446	PABPC1L	100	64.097	Sarcophilus_harrisii
ENSATEG00000007428	pabpc1l	100	79.491	ENSSFOG00015017304	pabpc1l	100	78.378	Scleropages_formosus
ENSATEG00000007428	pabpc1l	100	90.080	ENSSMAG00000010516	pabpc1l	98	98.450	Scophthalmus_maximus
ENSATEG00000007428	pabpc1l	100	91.097	ENSSDUG00000014743	pabpc1l	100	90.461	Seriola_dumerili
ENSATEG00000007428	pabpc1l	97	91.751	ENSSLDG00000006981	pabpc1l	98	94.064	Seriola_lalandi_dorsalis
ENSATEG00000007428	pabpc1l	99	72.742	ENSSPUG00000004233	PABPC1L	99	71.949	Sphenodon_punctatus
ENSATEG00000007428	pabpc1l	100	80.229	ENSSPAG00000017137	pabpc1l	100	77.162	Stegastes_partitus
ENSATEG00000007428	pabpc1l	99	69.935	ENSSSCG00000007382	PABPC1L	99	69.935	Sus_scrofa
ENSATEG00000007428	pabpc1l	99	70.983	ENSTGUG00000005114	PABPC1L	100	70.515	Taeniopygia_guttata
ENSATEG00000007428	pabpc1l	97	86.371	ENSTRUG00000011085	pabpc1l	97	85.714	Takifugu_rubripes
ENSATEG00000007428	pabpc1l	99	84.615	ENSTNIG00000017903	pabpc1l	98	83.814	Tetraodon_nigroviridis
ENSATEG00000007428	pabpc1l	94	77.397	ENSTBEG00000002851	PABPC1L	79	77.397	Tupaia_belangeri
ENSATEG00000007428	pabpc1l	94	67.466	ENSTTRG00000007618	PABPC1L	100	67.500	Tursiops_truncatus
ENSATEG00000007428	pabpc1l	99	67.758	ENSUAMG00000017682	PABPC1L	99	67.758	Ursus_americanus
ENSATEG00000007428	pabpc1l	66	74.095	ENSUMAG00000025436	PABPC1L	92	74.095	Ursus_maritimus
ENSATEG00000007428	pabpc1l	98	75.494	ENSVVUG00000018939	PABPC1L	99	75.494	Vulpes_vulpes
ENSATEG00000007428	pabpc1l	99	70.906	ENSXETG00000022831	pabpc1l	99	70.747	Xenopus_tropicalis
ENSATEG00000007428	pabpc1l	98	92.823	ENSXCOG00000005459	pabpc1l	99	93.617	Xiphophorus_couchianus
ENSATEG00000007428	pabpc1l	100	86.645	ENSXMAG00000017135	pabpc1l	100	86.010	Xiphophorus_maculatus