EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSATEG00000016559 (Gene tree)
Gene ID: 113150901
Gene Symbol: lsm4
Alias: zgc:73057|zgc:77848
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Anabas_testudineus
Status: putative
Strand: Minus strand
Length: 3452 bases
Position: chrOOHO01000016.1:17743931-17747382
Accession: 113150901
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSATEP00000023861	LSM	PF01423.22	1.2e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSATET00000024245	-	2333	-	ENSATEP00000023861	152 (aa)	XP_026199438	UPI000E455521

Gene Model

Click here to download ENSATEG00000016559's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSATEG00000016559's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSATEG00000016559	lsm4	51	34.146	ENSATEG00000006310	oscp1a	54	33.333
ENSATEG00000016559	lsm4	51	35.000	ENSATEG00000011376	si:ch73-14h10.2	82	35.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSATEG00000016559	lsm4	58	98.864	ENSG00000130520	LSM4	99	75.000	Homo_sapiens
ENSATEG00000016559	lsm4	100	96.053	ENSAPOG00000005643	lsm4	100	96.053	Acanthochromis_polyacanthus
ENSATEG00000016559	lsm4	57	98.851	ENSAMEG00000011162	LSM4	67	96.939	Ailuropoda_melanoleuca
ENSATEG00000016559	lsm4	100	93.421	ENSAOCG00000006414	lsm4	100	92.763	Amphiprion_ocellaris
ENSATEG00000016559	lsm4	100	94.079	ENSAPEG00000006238	lsm4	100	93.421	Amphiprion_percula
ENSATEG00000016559	lsm4	58	98.864	ENSANAG00000034659	LSM4	71	96.970	Aotus_nancymaae
ENSATEG00000016559	lsm4	100	91.447	ENSACLG00000022738	lsm4	100	90.789	Astatotilapia_calliptera
ENSATEG00000016559	lsm4	100	85.621	ENSAMXG00000016932	lsm4	100	84.314	Astyanax_mexicanus
ENSATEG00000016559	lsm4	58	98.864	ENSBTAG00000008578	LSM4	71	96.970	Bos_taurus
ENSATEG00000016559	lsm4	55	75.904	WBGene00003078	lsm-4	81	68.000	Caenorhabditis_elegans
ENSATEG00000016559	lsm4	58	98.864	ENSCJAG00000014171	LSM4	71	96.970	Callithrix_jacchus
ENSATEG00000016559	lsm4	58	98.864	ENSCAFG00000014900	LSM4	65	96.970	Canis_familiaris
ENSATEG00000016559	lsm4	58	98.864	ENSCAFG00020012137	LSM4	71	96.970	Canis_lupus_dingo
ENSATEG00000016559	lsm4	57	98.851	ENSCHIG00000010928	LSM4	65	96.939	Capra_hircus
ENSATEG00000016559	lsm4	58	97.727	ENSTSYG00000030906	LSM4	71	95.960	Carlito_syrichta
ENSATEG00000016559	lsm4	58	97.727	ENSCAPG00000014140	LSM4	71	95.960	Cavia_aperea
ENSATEG00000016559	lsm4	58	97.727	ENSCPOG00000024117	LSM4	71	95.960	Cavia_porcellus
ENSATEG00000016559	lsm4	58	98.864	ENSCCAG00000036308	LSM4	71	96.970	Cebus_capucinus
ENSATEG00000016559	lsm4	71	94.495	ENSCATG00000029311	LSM4	97	74.627	Cercocebus_atys
ENSATEG00000016559	lsm4	58	98.864	ENSCLAG00000010828	LSM4	71	96.970	Chinchilla_lanigera
ENSATEG00000016559	lsm4	58	98.864	ENSCSAG00000005370	LSM4	71	96.970	Chlorocebus_sabaeus
ENSATEG00000016559	lsm4	58	100.000	ENSCPBG00000012925	LSM4	72	97.980	Chrysemys_picta_bellii
ENSATEG00000016559	lsm4	57	93.023	ENSCING00000007519	-	76	87.629	Ciona_intestinalis
ENSATEG00000016559	lsm4	57	93.023	ENSCSAVG00000008596	-	78	87.629	Ciona_savignyi
ENSATEG00000016559	lsm4	58	98.864	ENSCANG00000043686	LSM4	97	72.464	Colobus_angolensis_palliatus
ENSATEG00000016559	lsm4	58	95.455	ENSCGRG00001014436	Lsm4	71	93.939	Cricetulus_griseus_chok1gshd
ENSATEG00000016559	lsm4	57	95.402	ENSCGRG00000009398	Lsm4	71	93.878	Cricetulus_griseus_crigri
ENSATEG00000016559	lsm4	100	80.263	ENSCSEG00000016127	lsm4	100	88.158	Cynoglossus_semilaevis
ENSATEG00000016559	lsm4	90	88.321	ENSCVAG00000021828	lsm4	98	88.321	Cyprinodon_variegatus
ENSATEG00000016559	lsm4	100	89.474	ENSCVAG00000010601	lsm4	100	89.474	Cyprinodon_variegatus
ENSATEG00000016559	lsm4	89	83.803	ENSDARG00000023852	lsm4	99	80.137	Danio_rerio
ENSATEG00000016559	lsm4	58	97.727	ENSDORG00000024225	Lsm4	71	95.960	Dipodomys_ordii
ENSATEG00000016559	lsm4	66	82.000	FBgn0032240	CG17768	63	81.818	Drosophila_melanogaster
ENSATEG00000016559	lsm4	86	91.538	ENSELUG00000012821	lsm4	93	93.496	Esox_lucius
ENSATEG00000016559	lsm4	58	98.864	ENSFCAG00000040580	LSM4	71	96.970	Felis_catus
ENSATEG00000016559	lsm4	57	100.000	ENSFALG00000009478	LSM4	71	97.959	Ficedula_albicollis
ENSATEG00000016559	lsm4	57	98.851	ENSFDAG00000010124	LSM4	71	96.939	Fukomys_damarensis
ENSATEG00000016559	lsm4	99	77.632	ENSGMOG00000007729	lsm4	99	76.316	Gadus_morhua
ENSATEG00000016559	lsm4	58	100.000	ENSGALG00000003385	LSM4	72	97.980	Gallus_gallus
ENSATEG00000016559	lsm4	100	88.158	ENSGAFG00000004903	lsm4	97	85.401	Gambusia_affinis
ENSATEG00000016559	lsm4	100	87.013	ENSGACG00000008140	lsm4	100	88.312	Gasterosteus_aculeatus
ENSATEG00000016559	lsm4	58	100.000	ENSGAGG00000017812	LSM4	72	97.980	Gopherus_agassizii
ENSATEG00000016559	lsm4	58	98.864	ENSGGOG00000012914	-	97	74.627	Gorilla_gorilla
ENSATEG00000016559	lsm4	100	90.789	ENSHBUG00000008858	lsm4	80	90.132	Haplochromis_burtoni
ENSATEG00000016559	lsm4	88	77.778	ENSHGLG00000006568	LSM4	71	96.970	Heterocephalus_glaber_female
ENSATEG00000016559	lsm4	61	98.913	ENSHGLG00100007894	LSM4	99	98.913	Heterocephalus_glaber_male
ENSATEG00000016559	lsm4	100	90.132	ENSHCOG00000008819	lsm4	100	90.132	Hippocampus_comes
ENSATEG00000016559	lsm4	100	85.621	ENSIPUG00000005368	Lsm4	100	84.967	Ictalurus_punctatus
ENSATEG00000016559	lsm4	58	98.864	ENSSTOG00000016494	LSM4	71	96.970	Ictidomys_tridecemlineatus
ENSATEG00000016559	lsm4	58	96.591	ENSJJAG00000017420	Lsm4	71	94.949	Jaculus_jaculus
ENSATEG00000016559	lsm4	100	87.500	ENSKMAG00000005073	lsm4	100	88.816	Kryptolebias_marmoratus
ENSATEG00000016559	lsm4	100	94.737	ENSLBEG00000027930	lsm4	100	94.079	Labrus_bergylta
ENSATEG00000016559	lsm4	58	100.000	ENSLACG00000015861	LSM4	71	97.980	Latimeria_chalumnae
ENSATEG00000016559	lsm4	84	91.406	ENSLOCG00000002025	lsm4	100	80.392	Lepisosteus_oculatus
ENSATEG00000016559	lsm4	57	97.701	ENSLAFG00000017459	LSM4	71	95.918	Loxodonta_africana
ENSATEG00000016559	lsm4	58	98.864	ENSMFAG00000031194	LSM4	97	72.464	Macaca_fascicularis
ENSATEG00000016559	lsm4	58	98.864	ENSMMUG00000004405	LSM4	71	96.970	Macaca_mulatta
ENSATEG00000016559	lsm4	68	94.231	ENSMNEG00000042899	LSM4	97	72.464	Macaca_nemestrina
ENSATEG00000016559	lsm4	71	94.495	ENSMLEG00000027948	LSM4	97	74.627	Mandrillus_leucophaeus
ENSATEG00000016559	lsm4	100	89.474	ENSMAMG00000006190	lsm4	100	88.816	Mastacembelus_armatus
ENSATEG00000016559	lsm4	100	90.789	ENSMZEG00005016420	lsm4	100	90.132	Maylandia_zebra
ENSATEG00000016559	lsm4	89	75.912	ENSMGAG00000004976	LSM4	71	97.959	Meleagris_gallopavo
ENSATEG00000016559	lsm4	65	95.960	ENSMICG00000000222	LSM4	71	95.960	Microcebus_murinus
ENSATEG00000016559	lsm4	58	95.455	ENSMOCG00000020861	Lsm4	71	93.939	Microtus_ochrogaster
ENSATEG00000016559	lsm4	100	92.105	ENSMALG00000018159	lsm4	100	92.105	Monopterus_albus
ENSATEG00000016559	lsm4	58	95.455	MGP_CAROLIEiJ_G0031158	Lsm4	71	93.939	Mus_caroli
ENSATEG00000016559	lsm4	58	95.455	ENSMUSG00000031848	Lsm4	96	87.879	Mus_musculus
ENSATEG00000016559	lsm4	58	95.455	MGP_PahariEiJ_G0021623	Lsm4	71	93.939	Mus_pahari
ENSATEG00000016559	lsm4	58	95.455	MGP_SPRETEiJ_G0032276	Lsm4	71	93.939	Mus_spretus
ENSATEG00000016559	lsm4	58	98.864	ENSMPUG00000015589	LSM4	71	96.970	Mustela_putorius_furo
ENSATEG00000016559	lsm4	57	98.851	ENSMLUG00000004010	LSM4	71	96.939	Myotis_lucifugus
ENSATEG00000016559	lsm4	58	95.455	ENSNGAG00000008644	Lsm4	71	93.939	Nannospalax_galili
ENSATEG00000016559	lsm4	71	97.222	ENSNBRG00000022150	lsm4	67	97.222	Neolamprologus_brichardi
ENSATEG00000016559	lsm4	51	97.403	ENSOPRG00000005575	LSM4	71	95.238	Ochotona_princeps
ENSATEG00000016559	lsm4	58	88.636	ENSODEG00000004519	-	72	86.869	Octodon_degus
ENSATEG00000016559	lsm4	58	98.864	ENSODEG00000020549	-	71	96.970	Octodon_degus
ENSATEG00000016559	lsm4	88	62.222	ENSODEG00000011712	-	96	62.222	Octodon_degus
ENSATEG00000016559	lsm4	100	91.447	ENSONIG00000012724	lsm4	100	90.789	Oreochromis_niloticus
ENSATEG00000016559	lsm4	57	94.505	ENSOANG00000007434	LSM4	88	93.137	Ornithorhynchus_anatinus
ENSATEG00000016559	lsm4	100	88.158	ENSORLG00000008391	lsm4	100	87.500	Oryzias_latipes
ENSATEG00000016559	lsm4	100	88.816	ENSORLG00020014829	lsm4	100	88.158	Oryzias_latipes_hni
ENSATEG00000016559	lsm4	100	88.158	ENSORLG00015010205	lsm4	100	87.500	Oryzias_latipes_hsok
ENSATEG00000016559	lsm4	100	87.500	ENSOMEG00000003606	lsm4	100	87.500	Oryzias_melastigma
ENSATEG00000016559	lsm4	64	95.918	ENSOGAG00000027992	LSM4	67	95.918	Otolemur_garnettii
ENSATEG00000016559	lsm4	57	98.851	ENSOARG00000012553	LSM4	68	96.939	Ovis_aries
ENSATEG00000016559	lsm4	58	98.864	ENSPPAG00000044045	-	71	96.970	Pan_paniscus
ENSATEG00000016559	lsm4	58	98.864	ENSPPRG00000018264	LSM4	71	96.970	Panthera_pardus
ENSATEG00000016559	lsm4	57	98.851	ENSPTIG00000006306	LSM4	71	96.939	Panthera_tigris_altaica
ENSATEG00000016559	lsm4	72	94.545	ENSPTRG00000031470	LSM4	71	96.970	Pan_troglodytes
ENSATEG00000016559	lsm4	71	94.495	ENSPANG00000014399	LSM4	97	74.627	Papio_anubis
ENSATEG00000016559	lsm4	100	84.314	ENSPKIG00000006154	lsm4	100	83.660	Paramormyrops_kingsleyae
ENSATEG00000016559	lsm4	57	100.000	ENSPSIG00000012358	LSM4	72	97.959	Pelodiscus_sinensis
ENSATEG00000016559	lsm4	58	95.455	ENSPEMG00000001358	Lsm4	71	93.939	Peromyscus_maniculatus_bairdii
ENSATEG00000016559	lsm4	100	88.158	ENSPFOG00000000570	lsm4	76	88.158	Poecilia_formosa
ENSATEG00000016559	lsm4	100	88.158	ENSPLAG00000016267	lsm4	100	88.158	Poecilia_latipinna
ENSATEG00000016559	lsm4	100	88.158	ENSPMEG00000016378	lsm4	100	88.158	Poecilia_mexicana
ENSATEG00000016559	lsm4	100	88.816	ENSPREG00000011290	lsm4	76	88.816	Poecilia_reticulata
ENSATEG00000016559	lsm4	58	98.864	ENSPPYG00000009736	LSM4	71	96.970	Pongo_abelii
ENSATEG00000016559	lsm4	65	95.960	ENSPCOG00000019837	LSM4	71	95.960	Propithecus_coquereli
ENSATEG00000016559	lsm4	58	98.864	ENSPVAG00000015383	LSM4	71	96.970	Pteropus_vampyrus
ENSATEG00000016559	lsm4	100	90.789	ENSPNYG00000016794	lsm4	100	90.132	Pundamilia_nyererei
ENSATEG00000016559	lsm4	95	86.897	ENSPNAG00000016598	lsm4	100	86.207	Pygocentrus_nattereri
ENSATEG00000016559	lsm4	58	95.455	ENSRNOG00000019572	Lsm4	71	93.939	Rattus_norvegicus
ENSATEG00000016559	lsm4	58	98.864	ENSRBIG00000024717	LSM4	97	73.913	Rhinopithecus_bieti
ENSATEG00000016559	lsm4	71	94.495	ENSRROG00000045706	LSM4	97	73.913	Rhinopithecus_roxellana
ENSATEG00000016559	lsm4	55	40.860	YER112W	LSM4	51	41.053	Saccharomyces_cerevisiae
ENSATEG00000016559	lsm4	58	100.000	ENSSHAG00000011559	LSM4	71	97.980	Sarcophilus_harrisii
ENSATEG00000016559	lsm4	100	84.967	ENSSFOG00015021067	lsm4	100	84.314	Scleropages_formosus
ENSATEG00000016559	lsm4	100	87.500	ENSSMAG00000021020	lsm4	100	88.889	Scophthalmus_maximus
ENSATEG00000016559	lsm4	100	88.024	ENSSDUG00000009588	lsm4	100	88.024	Seriola_dumerili
ENSATEG00000016559	lsm4	100	87.500	ENSSLDG00000006827	lsm4	100	87.500	Seriola_lalandi_dorsalis
ENSATEG00000016559	lsm4	88	75.540	ENSSPUG00000010166	LSM4	63	97.959	Sphenodon_punctatus
ENSATEG00000016559	lsm4	100	95.395	ENSSPAG00000011615	lsm4	100	95.395	Stegastes_partitus
ENSATEG00000016559	lsm4	58	98.864	ENSSSCG00000034314	LSM4	71	96.970	Sus_scrofa
ENSATEG00000016559	lsm4	100	87.500	ENSTRUG00000021737	lsm4	100	87.500	Takifugu_rubripes
ENSATEG00000016559	lsm4	100	82.353	ENSTNIG00000010191	lsm4	100	82.353	Tetraodon_nigroviridis
ENSATEG00000016559	lsm4	72	94.545	ENSUAMG00000000665	LSM4	91	94.545	Ursus_americanus
ENSATEG00000016559	lsm4	58	98.864	ENSUMAG00000009013	LSM4	71	96.970	Ursus_maritimus
ENSATEG00000016559	lsm4	57	98.851	ENSVVUG00000008136	LSM4	50	96.939	Vulpes_vulpes
ENSATEG00000016559	lsm4	64	96.939	ENSXETG00000024933	lsm4	71	96.939	Xenopus_tropicalis
ENSATEG00000016559	lsm4	100	88.158	ENSXMAG00000026672	lsm4	76	88.158	Xiphophorus_maculatus