EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSATEG00000017867 (Gene tree)
Gene ID: 113172176
Gene Symbol: upf1
Alias: rent1|wu:fi40f07|wu:fj48a01|zgc:55472
Full Name: regulator of nonsense transcripts 1-like
Gene Type: protein_coding
Species: Anabas_testudineus
Status: putative
Strand: Minus strand
Length: 13956 bases
Position: chrOOHO01000003.1:17215577-17229532
Accession: 113172176
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSATEP00000025816	UPF1_Zn_bind	PF09416.10	2.1e-75	1	1
ENSATEP00000025816	ResIII	PF04851.15	2.7e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSATET00000026234	-	5722	XM_026375029	ENSATEP00000025816	1115 (aa)	XP_026230814	UPI000E4662A2

Gene Model

Click here to download ENSATEG00000017867's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSATEG00000017867's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSATEG00000017867	upf1	100	92.576	ENSATEG00000016606	-	100	91.548

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSATEG00000017867	upf1	100	90.677	ENSG00000005007	UPF1	100	89.886	Homo_sapiens
ENSATEG00000017867	upf1	100	97.939	ENSAPOG00000023773	upf1	100	97.939	Acanthochromis_polyacanthus
ENSATEG00000017867	upf1	100	92.576	ENSAPOG00000010916	-	100	91.548	Acanthochromis_polyacanthus
ENSATEG00000017867	upf1	100	90.201	ENSAMEG00000011474	UPF1	100	89.414	Ailuropoda_melanoleuca
ENSATEG00000017867	upf1	94	92.234	ENSACIG00000010985	-	100	91.309	Amphilophus_citrinellus
ENSATEG00000017867	upf1	100	96.057	ENSACIG00000019949	upf1	100	96.057	Amphilophus_citrinellus
ENSATEG00000017867	upf1	100	92.397	ENSAOCG00000006352	-	100	91.370	Amphiprion_ocellaris
ENSATEG00000017867	upf1	100	98.029	ENSAOCG00000018519	upf1	100	98.029	Amphiprion_ocellaris
ENSATEG00000017867	upf1	100	92.308	ENSAPEG00000006292	-	100	91.370	Amphiprion_percula
ENSATEG00000017867	upf1	100	98.029	ENSAPEG00000016344	upf1	100	98.029	Amphiprion_percula
ENSATEG00000017867	upf1	95	92.444	ENSAPLG00000009175	UPF1	100	91.511	Anas_platyrhynchos
ENSATEG00000017867	upf1	95	90.552	ENSANAG00000024107	UPF1	95	89.616	Aotus_nancymaae
ENSATEG00000017867	upf1	100	96.057	ENSACLG00000007181	upf1	100	96.057	Astatotilapia_calliptera
ENSATEG00000017867	upf1	100	91.897	ENSACLG00000022630	-	100	91.355	Astatotilapia_calliptera
ENSATEG00000017867	upf1	100	93.728	ENSAMXG00000042187	upf1	100	93.316	Astyanax_mexicanus
ENSATEG00000017867	upf1	100	90.218	ENSBTAG00000020922	UPF1	100	89.432	Bos_taurus
ENSATEG00000017867	upf1	80	54.353	WBGene00004880	smg-2	83	54.353	Caenorhabditis_elegans
ENSATEG00000017867	upf1	100	89.808	ENSCJAG00000019627	UPF1	100	89.024	Callithrix_jacchus
ENSATEG00000017867	upf1	100	89.983	ENSCAFG00000014578	UPF1	100	89.199	Canis_familiaris
ENSATEG00000017867	upf1	100	90.853	ENSCAFG00020012347	UPF1	100	90.062	Canis_lupus_dingo
ENSATEG00000017867	upf1	100	91.093	ENSCHIG00000011018	UPF1	100	90.300	Capra_hircus
ENSATEG00000017867	upf1	95	91.955	ENSTSYG00000008877	UPF1	98	91.020	Carlito_syrichta
ENSATEG00000017867	upf1	96	91.212	ENSCAPG00000005758	UPF1	95	90.926	Cavia_aperea
ENSATEG00000017867	upf1	100	91.054	ENSCPOG00000025463	UPF1	100	90.168	Cavia_porcellus
ENSATEG00000017867	upf1	100	90.677	ENSCCAG00000032175	UPF1	100	89.886	Cebus_capucinus
ENSATEG00000017867	upf1	94	91.925	ENSCATG00000040306	UPF1	98	90.833	Cercocebus_atys
ENSATEG00000017867	upf1	95	91.862	ENSCLAG00000004037	UPF1	99	89.935	Chinchilla_lanigera
ENSATEG00000017867	upf1	100	90.677	ENSCSAG00000005276	UPF1	100	89.886	Chlorocebus_sabaeus
ENSATEG00000017867	upf1	100	91.512	ENSCPBG00000012513	UPF1	100	90.539	Chrysemys_picta_bellii
ENSATEG00000017867	upf1	76	79.812	ENSCING00000021399	-	99	79.460	Ciona_intestinalis
ENSATEG00000017867	upf1	99	71.745	ENSCSAVG00000006533	-	99	71.454	Ciona_savignyi
ENSATEG00000017867	upf1	95	91.862	ENSCANG00000029819	UPF1	97	90.926	Colobus_angolensis_palliatus
ENSATEG00000017867	upf1	100	90.813	ENSCGRG00001021067	Upf1	100	90.106	Cricetulus_griseus_chok1gshd
ENSATEG00000017867	upf1	95	91.581	ENSCGRG00000013480	Upf1	98	89.658	Cricetulus_griseus_crigri
ENSATEG00000017867	upf1	100	89.257	ENSCSEG00000017239	upf1	100	89.705	Cynoglossus_semilaevis
ENSATEG00000017867	upf1	100	92.838	ENSCSEG00000016159	-	100	91.585	Cynoglossus_semilaevis
ENSATEG00000017867	upf1	100	91.860	ENSCVAG00000010561	upf1	100	91.324	Cyprinodon_variegatus
ENSATEG00000017867	upf1	100	93.728	ENSDARG00000016302	upf1	100	93.226	Danio_rerio
ENSATEG00000017867	upf1	95	89.439	ENSDORG00000009984	Upf1	95	88.598	Dipodomys_ordii
ENSATEG00000017867	upf1	83	72.252	FBgn0030354	Upf1	81	70.924	Drosophila_melanogaster
ENSATEG00000017867	upf1	53	87.086	ENSEBUG00000010069	upf1	96	87.417	Eptatretus_burgeri
ENSATEG00000017867	upf1	100	91.093	ENSEASG00005006549	UPF1	100	90.300	Equus_asinus_asinus
ENSATEG00000017867	upf1	100	91.093	ENSECAG00000010639	UPF1	100	90.300	Equus_caballus
ENSATEG00000017867	upf1	100	92.335	ENSELUG00000012916	-	100	91.918	Esox_lucius
ENSATEG00000017867	upf1	100	93.996	ENSELUG00000020917	upf1	100	92.781	Esox_lucius
ENSATEG00000017867	upf1	100	89.983	ENSFCAG00000009757	UPF1	100	89.199	Felis_catus
ENSATEG00000017867	upf1	95	93.052	ENSFALG00000009312	UPF1	96	92.019	Ficedula_albicollis
ENSATEG00000017867	upf1	95	91.768	ENSFDAG00000014816	UPF1	99	89.843	Fukomys_damarensis
ENSATEG00000017867	upf1	87	94.514	ENSFHEG00000016276	-	96	94.514	Fundulus_heteroclitus
ENSATEG00000017867	upf1	100	92.692	ENSFHEG00000006428	upf1	100	91.533	Fundulus_heteroclitus
ENSATEG00000017867	upf1	100	90.796	ENSGMOG00000007541	upf1	100	90.371	Gadus_morhua
ENSATEG00000017867	upf1	100	91.189	ENSGALG00000003220	UPF1	100	90.220	Gallus_gallus
ENSATEG00000017867	upf1	100	91.860	ENSGAFG00000004831	upf1	100	91.339	Gambusia_affinis
ENSATEG00000017867	upf1	62	96.398	ENSGAFG00000015443	-	85	96.398	Gambusia_affinis
ENSATEG00000017867	upf1	100	91.741	ENSGAGG00000022217	UPF1	100	91.119	Gopherus_agassizii
ENSATEG00000017867	upf1	95	92.817	ENSGGOG00000002608	UPF1	99	91.871	Gorilla_gorilla
ENSATEG00000017867	upf1	85	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSATEG00000017867	upf1	88	96.154	ENSHBUG00000014694	upf1	100	96.154	Haplochromis_burtoni
ENSATEG00000017867	upf1	100	89.634	ENSHGLG00000010900	UPF1	100	89.024	Heterocephalus_glaber_female
ENSATEG00000017867	upf1	95	89.991	ENSHGLG00100005904	UPF1	96	89.242	Heterocephalus_glaber_male
ENSATEG00000017867	upf1	100	91.682	ENSHCOG00000008918	upf1	100	91.778	Hippocampus_comes
ENSATEG00000017867	upf1	100	93.817	ENSIPUG00000005108	UPF1	100	93.405	Ictalurus_punctatus
ENSATEG00000017867	upf1	100	90.589	ENSSTOG00000009196	UPF1	100	89.886	Ictidomys_tridecemlineatus
ENSATEG00000017867	upf1	100	90.096	ENSJJAG00000023151	Upf1	100	89.395	Jaculus_jaculus
ENSATEG00000017867	upf1	100	91.719	ENSKMAG00000004962	upf1	100	91.324	Kryptolebias_marmoratus
ENSATEG00000017867	upf1	100	97.670	ENSLBEG00000014862	upf1	100	97.670	Labrus_bergylta
ENSATEG00000017867	upf1	100	92.225	ENSLBEG00000027848	-	100	91.510	Labrus_bergylta
ENSATEG00000017867	upf1	64	92.437	ENSLACG00000008482	UPF1	100	90.769	Latimeria_chalumnae
ENSATEG00000017867	upf1	100	93.107	ENSLOCG00000002072	upf1	100	92.253	Lepisosteus_oculatus
ENSATEG00000017867	upf1	100	89.878	ENSLAFG00000014963	UPF1	100	89.092	Loxodonta_africana
ENSATEG00000017867	upf1	100	90.439	ENSMFAG00000037748	UPF1	100	89.649	Macaca_fascicularis
ENSATEG00000017867	upf1	100	90.201	ENSMMUG00000023286	UPF1	100	89.414	Macaca_mulatta
ENSATEG00000017867	upf1	100	90.439	ENSMNEG00000000046	UPF1	100	89.649	Macaca_nemestrina
ENSATEG00000017867	upf1	95	91.862	ENSMLEG00000028404	UPF1	99	90.926	Mandrillus_leucophaeus
ENSATEG00000017867	upf1	100	98.386	ENSMAMG00000006229	upf1	100	98.386	Mastacembelus_armatus
ENSATEG00000017867	upf1	100	92.315	ENSMAMG00000006231	-	100	91.378	Mastacembelus_armatus
ENSATEG00000017867	upf1	100	91.897	ENSMZEG00005016386	-	100	91.355	Maylandia_zebra
ENSATEG00000017867	upf1	100	96.953	ENSMZEG00005003489	upf1	100	96.953	Maylandia_zebra
ENSATEG00000017867	upf1	95	91.963	ENSMGAG00000004745	UPF1	100	91.028	Meleagris_gallopavo
ENSATEG00000017867	upf1	95	91.581	ENSMAUG00000011398	Upf1	95	89.658	Mesocricetus_auratus
ENSATEG00000017867	upf1	100	90.765	ENSMICG00000001659	UPF1	100	89.974	Microcebus_murinus
ENSATEG00000017867	upf1	100	89.939	ENSMOCG00000005699	Upf1	100	89.326	Microtus_ochrogaster
ENSATEG00000017867	upf1	95	89.831	ENSMMOG00000007537	-	99	88.764	Mola_mola
ENSATEG00000017867	upf1	100	95.516	ENSMMOG00000007881	upf1	100	95.516	Mola_mola
ENSATEG00000017867	upf1	100	90.096	ENSMODG00000003689	UPF1	100	89.401	Monodelphis_domestica
ENSATEG00000017867	upf1	100	91.266	ENSMALG00000018100	-	100	90.160	Monopterus_albus
ENSATEG00000017867	upf1	100	95.336	ENSMALG00000000144	upf1	100	95.336	Monopterus_albus
ENSATEG00000017867	upf1	100	90.724	MGP_CAROLIEiJ_G0031142	Upf1	100	90.018	Mus_caroli
ENSATEG00000017867	upf1	100	90.724	ENSMUSG00000058301	Upf1	100	90.018	Mus_musculus
ENSATEG00000017867	upf1	100	90.724	MGP_PahariEiJ_G0021607	Upf1	100	90.018	Mus_pahari
ENSATEG00000017867	upf1	100	90.724	MGP_SPRETEiJ_G0032260	Upf1	100	90.018	Mus_spretus
ENSATEG00000017867	upf1	100	90.853	ENSMPUG00000015516	UPF1	100	90.062	Mustela_putorius_furo
ENSATEG00000017867	upf1	99	90.733	ENSMLUG00000012122	UPF1	99	89.938	Myotis_lucifugus
ENSATEG00000017867	upf1	100	89.616	ENSNGAG00000024107	Upf1	100	88.918	Nannospalax_galili
ENSATEG00000017867	upf1	100	88.574	ENSNBRG00000022069	-	100	90.476	Neolamprologus_brichardi
ENSATEG00000017867	upf1	100	93.280	ENSNBRG00000000670	upf1	100	93.100	Neolamprologus_brichardi
ENSATEG00000017867	upf1	95	86.249	ENSNLEG00000006062	UPF1	99	85.313	Nomascus_leucogenys
ENSATEG00000017867	upf1	83	86.174	ENSMEUG00000014146	-	83	84.280	Notamacropus_eugenii
ENSATEG00000017867	upf1	95	86.295	ENSOPRG00000014018	UPF1	88	90.033	Ochotona_princeps
ENSATEG00000017867	upf1	100	90.869	ENSODEG00000012426	UPF1	100	90.071	Octodon_degus
ENSATEG00000017867	upf1	100	96.953	ENSONIG00000010452	upf1	100	96.953	Oreochromis_niloticus
ENSATEG00000017867	upf1	100	91.897	ENSONIG00000012729	-	100	91.592	Oreochromis_niloticus
ENSATEG00000017867	upf1	100	90.140	ENSOANG00000004568	UPF1	100	89.267	Ornithorhynchus_anatinus
ENSATEG00000017867	upf1	100	92.232	ENSORLG00000008453	upf1	100	90.836	Oryzias_latipes
ENSATEG00000017867	upf1	100	92.150	ENSORLG00020014758	upf1	100	90.756	Oryzias_latipes_hni
ENSATEG00000017867	upf1	100	92.150	ENSORLG00015010165	upf1	100	90.756	Oryzias_latipes_hsok
ENSATEG00000017867	upf1	100	92.589	ENSOMEG00000003665	upf1	100	91.192	Oryzias_melastigma
ENSATEG00000017867	upf1	100	90.765	ENSOGAG00000012866	UPF1	100	89.974	Otolemur_garnettii
ENSATEG00000017867	upf1	96	89.040	ENSOARG00000010739	UPF1	100	88.134	Ovis_aries
ENSATEG00000017867	upf1	95	91.862	ENSPPAG00000043884	UPF1	96	90.926	Pan_paniscus
ENSATEG00000017867	upf1	100	89.983	ENSPPRG00000023470	UPF1	100	89.199	Panthera_pardus
ENSATEG00000017867	upf1	95	90.849	ENSPTIG00000010159	UPF1	99	89.906	Panthera_tigris_altaica
ENSATEG00000017867	upf1	100	90.439	ENSPTRG00000010721	UPF1	100	89.649	Pan_troglodytes
ENSATEG00000017867	upf1	100	90.439	ENSPANG00000008847	UPF1	100	89.649	Papio_anubis
ENSATEG00000017867	upf1	90	95.631	ENSPKIG00000006069	upf1	95	96.964	Paramormyrops_kingsleyae
ENSATEG00000017867	upf1	70	91.315	ENSPSIG00000009491	UPF1	100	89.911	Pelodiscus_sinensis
ENSATEG00000017867	upf1	100	92.576	ENSPMGG00000017327	upf1	100	92.755	Periophthalmus_magnuspinnatus
ENSATEG00000017867	upf1	100	89.939	ENSPEMG00000001085	Upf1	100	89.239	Peromyscus_maniculatus_bairdii
ENSATEG00000017867	upf1	100	86.756	ENSPMAG00000001206	upf1	100	85.511	Petromyzon_marinus
ENSATEG00000017867	upf1	100	91.461	ENSPCIG00000006156	UPF1	100	90.669	Phascolarctos_cinereus
ENSATEG00000017867	upf1	100	94.170	ENSPLAG00000018155	-	100	94.170	Poecilia_latipinna
ENSATEG00000017867	upf1	100	92.039	ENSPLAG00000016232	-	100	91.324	Poecilia_latipinna
ENSATEG00000017867	upf1	100	93.901	ENSPMEG00000011443	-	100	93.004	Poecilia_mexicana
ENSATEG00000017867	upf1	100	91.957	ENSPMEG00000016319	-	100	91.242	Poecilia_mexicana
ENSATEG00000017867	upf1	100	91.860	ENSPREG00000011247	-	100	91.145	Poecilia_reticulata
ENSATEG00000017867	upf1	100	94.002	ENSPREG00000009940	upf1	100	94.002	Poecilia_reticulata
ENSATEG00000017867	upf1	100	84.756	ENSPPYG00000009752	UPF1	100	84.146	Pongo_abelii
ENSATEG00000017867	upf1	76	98.990	ENSPCAG00000012962	UPF1	76	98.990	Procavia_capensis
ENSATEG00000017867	upf1	100	90.455	ENSPCOG00000023813	UPF1	100	89.667	Propithecus_coquereli
ENSATEG00000017867	upf1	67	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSATEG00000017867	upf1	100	96.953	ENSPNYG00000003694	upf1	100	96.953	Pundamilia_nyererei
ENSATEG00000017867	upf1	100	92.129	ENSPNYG00000016731	-	100	91.592	Pundamilia_nyererei
ENSATEG00000017867	upf1	100	93.817	ENSPNAG00000025614	upf1	100	93.405	Pygocentrus_nattereri
ENSATEG00000017867	upf1	100	90.724	ENSRNOG00000020134	Upf1	100	90.018	Rattus_norvegicus
ENSATEG00000017867	upf1	95	89.523	ENSRBIG00000013894	UPF1	98	91.515	Rhinopithecus_bieti
ENSATEG00000017867	upf1	95	91.862	ENSRROG00000040935	UPF1	98	91.515	Rhinopithecus_roxellana
ENSATEG00000017867	upf1	71	57.697	YMR080C	NAM7	84	56.916	Saccharomyces_cerevisiae
ENSATEG00000017867	upf1	95	91.620	ENSSBOG00000023632	UPF1	96	90.689	Saimiri_boliviensis_boliviensis
ENSATEG00000017867	upf1	95	92.344	ENSSHAG00000010499	UPF1	100	91.410	Sarcophilus_harrisii
ENSATEG00000017867	upf1	100	93.470	ENSSFOG00015021095	upf1	100	92.616	Scleropages_formosus
ENSATEG00000017867	upf1	100	92.315	ENSSMAG00000021018	-	100	91.111	Scophthalmus_maximus
ENSATEG00000017867	upf1	100	96.685	ENSSMAG00000005055	upf1	100	96.685	Scophthalmus_maximus
ENSATEG00000017867	upf1	100	92.404	ENSSDUG00000009629	-	100	91.378	Seriola_dumerili
ENSATEG00000017867	upf1	100	98.834	ENSSDUG00000013320	upf1	100	98.834	Seriola_dumerili
ENSATEG00000017867	upf1	100	97.937	ENSSLDG00000020868	upf1	100	97.937	Seriola_lalandi_dorsalis
ENSATEG00000017867	upf1	100	92.404	ENSSLDG00000006878	-	100	91.378	Seriola_lalandi_dorsalis
ENSATEG00000017867	upf1	100	91.489	ENSSPUG00000010538	UPF1	100	90.691	Sphenodon_punctatus
ENSATEG00000017867	upf1	100	92.665	ENSSPAG00000011521	-	100	91.689	Stegastes_partitus
ENSATEG00000017867	upf1	100	94.439	ENSSPAG00000000003	upf1	100	94.439	Stegastes_partitus
ENSATEG00000017867	upf1	100	91.005	ENSSSCG00000039301	UPF1	99	91.887	Sus_scrofa
ENSATEG00000017867	upf1	81	87.340	ENSTGUG00000001057	UPF1	100	90.976	Taeniopygia_guttata
ENSATEG00000017867	upf1	100	91.592	ENSTRUG00000005131	-	100	90.820	Takifugu_rubripes
ENSATEG00000017867	upf1	100	95.161	ENSTRUG00000000150	upf1	100	95.789	Takifugu_rubripes
ENSATEG00000017867	upf1	100	87.390	ENSTTRG00000011544	UPF1	100	86.508	Tursiops_truncatus
ENSATEG00000017867	upf1	100	90.853	ENSUAMG00000007093	UPF1	100	90.062	Ursus_americanus
ENSATEG00000017867	upf1	95	92.925	ENSUMAG00000006652	UPF1	99	92.159	Ursus_maritimus
ENSATEG00000017867	upf1	100	90.853	ENSVVUG00000007797	UPF1	100	90.062	Vulpes_vulpes
ENSATEG00000017867	upf1	100	78.733	ENSXETG00000013602	upf1	100	77.461	Xenopus_tropicalis
ENSATEG00000017867	upf1	94	92.271	ENSXCOG00000005764	-	99	91.714	Xiphophorus_couchianus
ENSATEG00000017867	upf1	97	92.579	ENSXCOG00000015275	-	96	92.301	Xiphophorus_couchianus
ENSATEG00000017867	upf1	100	92.735	ENSXMAG00000001703	-	100	92.466	Xiphophorus_maculatus
ENSATEG00000017867	upf1	100	91.868	ENSXMAG00000002540	-	100	91.347	Xiphophorus_maculatus