EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
Description
Ensembl ID
ENSATEG00000018742 (Gene tree)
Gene ID
113161109
Gene Symbol
upf3b
Alias
zgc:174674|zgc:66390
Full Name
UPF3B%2C regulator of nonsense mediated mRNA decay
Gene Type
protein_coding
Species
Anabas_testudineus
Status
putative
Strand
Plus strand
Length
4413 bases
Position
chrOOHO01000011.1:15178106-15182518
Accession
113161109
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSATEP00000027090Smg4_UPF3PF03467.157.5e-5511
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSATET00000027518-2943-ENSATEP00000027090463 (aa)XP_026214415UPI000E464192
Gene Model
Click here to download ENSATEG00000018742's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSATEG00000018742's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSATEG00000018742upf3b9555.460ENSG00000125351UPF3B9669.524Homo_sapiens
ENSATEG00000018742upf3b8850.242ENSG00000169062UPF3A8349.275Homo_sapiens
ENSATEG00000018742upf3b10086.825ENSAPOG00000012775upf3b10086.825Acanthochromis_polyacanthus
ENSATEG00000018742upf3b9459.735ENSAMEG00000000163UPF3B9458.758Ailuropoda_melanoleuca
ENSATEG00000018742upf3b10077.564ENSACIG00000013582upf3b10082.051Amphilophus_citrinellus
ENSATEG00000018742upf3b10085.961ENSAOCG00000000706upf3b10085.961Amphiprion_ocellaris
ENSATEG00000018742upf3b10086.393ENSAPEG00000005545upf3b10086.393Amphiprion_percula
ENSATEG00000018742upf3b8951.905ENSACAG00000001540UPF3A9647.597Anolis_carolinensis
ENSATEG00000018742upf3b9860.897ENSACAG00000003625UPF3B9858.458Anolis_carolinensis
ENSATEG00000018742upf3b9758.209ENSANAG00000021894-9769.378Aotus_nancymaae
ENSATEG00000018742upf3b9655.150ENSANAG00000025598-9460.526Aotus_nancymaae
ENSATEG00000018742upf3b10083.656ENSACLG00000001649upf3b10083.226Astatotilapia_calliptera
ENSATEG00000018742upf3b6783.784ENSAMXG00000000199upf3b10083.784Astyanax_mexicanus
ENSATEG00000018742upf3b9145.622ENSAMXG00000002608upf3a8949.433Astyanax_mexicanus
ENSATEG00000018742upf3b5569.118ENSBTAG00000035615UPF3B6869.194Bos_taurus
ENSATEG00000018742upf3b9757.816ENSCJAG00000004975UPF3B9768.900Callithrix_jacchus
ENSATEG00000018742upf3b9657.974ENSCAFG00000018426UPF3B9658.758Canis_familiaris
ENSATEG00000018742upf3b9457.080ENSCAFG00020004074UPF3B9456.541Canis_lupus_dingo
ENSATEG00000018742upf3b9656.576ENSCHIG00000000247-9456.897Capra_hircus
ENSATEG00000018742upf3b9656.367ENSCHIG00000018011-9656.681Capra_hircus
ENSATEG00000018742upf3b9340.783ENSCHIG00000011454-8439.409Capra_hircus
ENSATEG00000018742upf3b9657.511ENSTSYG00000014690UPF3B9664.186Carlito_syrichta
ENSATEG00000018742upf3b5550.781ENSCCAG00000021964-6045.641Cebus_capucinus
ENSATEG00000018742upf3b9239.866ENSCCAG00000029813-9639.640Cebus_capucinus
ENSATEG00000018742upf3b9555.460ENSCATG00000017506UPF3B9769.378Cercocebus_atys
ENSATEG00000018742upf3b6367.314ENSCLAG00000003260UPF3B9658.315Chinchilla_lanigera
ENSATEG00000018742upf3b9553.958ENSCSAG00000018348UPF3B9755.649Chlorocebus_sabaeus
ENSATEG00000018742upf3b9460.407ENSCPBG00000020685UPF3B9458.145Chrysemys_picta_bellii
ENSATEG00000018742upf3b5568.750ENSCANG00000029220UPF3B6669.194Colobus_angolensis_palliatus
ENSATEG00000018742upf3b9455.088ENSCGRG00001006858-9456.236Cricetulus_griseus_chok1gshd
ENSATEG00000018742upf3b6857.229ENSCGRG00001013643-9254.493Cricetulus_griseus_chok1gshd
ENSATEG00000018742upf3b8658.145ENSCGRG00000007627Upf3b9359.406Cricetulus_griseus_crigri
ENSATEG00000018742upf3b9976.458ENSCSEG00000002046upf3b9976.667Cynoglossus_semilaevis
ENSATEG00000018742upf3b9350.673ENSCSEG00000005106upf3a9152.784Cynoglossus_semilaevis
ENSATEG00000018742upf3b10079.310ENSCVAG00000005030upf3b10078.448Cyprinodon_variegatus
ENSATEG00000018742upf3b9149.773ENSDARG00000069297upf3a8950.797Danio_rerio
ENSATEG00000018742upf3b9373.684ENSDARG00000000489upf3b9971.734Danio_rerio
ENSATEG00000018742upf3b9457.849ENSDNOG00000008665UPF3B9457.112Dasypus_novemcinctus
ENSATEG00000018742upf3b9459.292ENSDORG00000006077Upf3b9458.093Dipodomys_ordii
ENSATEG00000018742upf3b9656.034ENSEASG00005012919UPF3B9457.650Equus_asinus_asinus
ENSATEG00000018742upf3b9656.034ENSECAG00000016947UPF3B9457.650Equus_caballus
ENSATEG00000018742upf3b9970.041ENSELUG00000020389upf3b10071.340Esox_lucius
ENSATEG00000018742upf3b8952.969ENSELUG00000011050upf3a8451.422Esox_lucius
ENSATEG00000018742upf3b9658.584ENSFCAG00000004388UPF3B9657.451Felis_catus
ENSATEG00000018742upf3b9458.281ENSFALG00000001569UPF3B9656.198Ficedula_albicollis
ENSATEG00000018742upf3b9659.267ENSFDAG00000018869UPF3B9658.315Fukomys_damarensis
ENSATEG00000018742upf3b10080.819ENSFHEG00000017895upf3b10080.819Fundulus_heteroclitus
ENSATEG00000018742upf3b10071.097ENSGMOG00000001621upf3b10071.519Gadus_morhua
ENSATEG00000018742upf3b9658.963ENSGALG00000008618UPF3B9659.395Gallus_gallus
ENSATEG00000018742upf3b10079.310ENSGAFG00000000829upf3b10078.664Gambusia_affinis
ENSATEG00000018742upf3b10079.872ENSGACG00000017435upf3b9489.062Gasterosteus_aculeatus
ENSATEG00000018742upf3b9663.717ENSGAGG00000001219UPF3B9662.084Gopherus_agassizii
ENSATEG00000018742upf3b8850.000ENSGGOG00000015428UPF3A8349.034Gorilla_gorilla
ENSATEG00000018742upf3b8739.655ENSGGOG00000043074-8141.320Gorilla_gorilla
ENSATEG00000018742upf3b9555.460ENSGGOG00000023995UPF3B9757.204Gorilla_gorilla
ENSATEG00000018742upf3b8639.851ENSGGOG00000041219-8641.523Gorilla_gorilla
ENSATEG00000018742upf3b10083.226ENSHBUG00000017393upf3b10082.796Haplochromis_burtoni
ENSATEG00000018742upf3b9459.603ENSHGLG00000019582-9458.628Heterocephalus_glaber_female
ENSATEG00000018742upf3b6859.281ENSHGLG00000011189-9453.980Heterocephalus_glaber_female
ENSATEG00000018742upf3b7157.184ENSHGLG00100001889-9453.483Heterocephalus_glaber_male
ENSATEG00000018742upf3b9456.954ENSHGLG00100002042-9456.858Heterocephalus_glaber_male
ENSATEG00000018742upf3b10074.573ENSHCOG00000017004upf3b10073.662Hippocampus_comes
ENSATEG00000018742upf3b8953.511ENSHCOG00000013985upf3a6974.545Hippocampus_comes
ENSATEG00000018742upf3b9544.516ENSIPUG00000023450upf3a9349.247Ictalurus_punctatus
ENSATEG00000018742upf3b10073.348ENSIPUG00000019249upf3b10073.348Ictalurus_punctatus
ENSATEG00000018742upf3b9757.816ENSSTOG00000001101UPF3B9757.082Ictidomys_tridecemlineatus
ENSATEG00000018742upf3b9456.858ENSJJAG00000000053Upf3b9457.174Jaculus_jaculus
ENSATEG00000018742upf3b10085.745ENSKMAG00000020300upf3b10084.449Kryptolebias_marmoratus
ENSATEG00000018742upf3b6089.170ENSLBEG00000028689upf3b5989.591Labrus_bergylta
ENSATEG00000018742upf3b8946.135ENSLBEG00000021570upf3a8448.434Labrus_bergylta
ENSATEG00000018742upf3b10062.076ENSLACG00000008691UPF3B10060.833Latimeria_chalumnae
ENSATEG00000018742upf3b9668.527ENSLOCG00000015238upf3b9870.312Lepisosteus_oculatus
ENSATEG00000018742upf3b8856.901ENSLOCG00000002665upf3a8555.181Lepisosteus_oculatus
ENSATEG00000018742upf3b9657.759ENSLAFG00000001267UPF3B9657.235Loxodonta_africana
ENSATEG00000018742upf3b9555.246ENSMFAG00000045414UPF3B9769.378Macaca_fascicularis
ENSATEG00000018742upf3b9555.246ENSMMUG00000020222UPF3B9769.378Macaca_mulatta
ENSATEG00000018742upf3b9555.246ENSMNEG00000039794UPF3B9769.378Macaca_nemestrina
ENSATEG00000018742upf3b9555.460ENSMLEG00000010999UPF3B9769.378Mandrillus_leucophaeus
ENSATEG00000018742upf3b8950.226ENSMAMG00000018364upf3a8450.698Mastacembelus_armatus
ENSATEG00000018742upf3b10083.656ENSMZEG00005007871upf3b10083.226Maylandia_zebra
ENSATEG00000018742upf3b8060.976ENSMGAG00000007728UPF3B9460.434Meleagris_gallopavo
ENSATEG00000018742upf3b8352.273ENSMGAG00000014837UPF3A9348.166Meleagris_gallopavo
ENSATEG00000018742upf3b9455.088ENSMAUG00000008705Upf3b9456.071Mesocricetus_auratus
ENSATEG00000018742upf3b5568.978ENSMICG00000001743UPF3B6669.194Microcebus_murinus
ENSATEG00000018742upf3b9454.624ENSMOCG00000017893Upf3b9455.150Microtus_ochrogaster
ENSATEG00000018742upf3b10081.250ENSMMOG00000004183upf3b10081.034Mola_mola
ENSATEG00000018742upf3b9150.805ENSMODG00000003159UPF3A9647.630Monodelphis_domestica
ENSATEG00000018742upf3b9061.429ENSMODG00000010232UPF3B9362.344Monodelphis_domestica
ENSATEG00000018742upf3b10083.940ENSMALG00000008042upf3b10084.797Monopterus_albus
ENSATEG00000018742upf3b9454.846MGP_CAROLIEiJ_G0032999Upf3b9852.896Mus_caroli
ENSATEG00000018742upf3b9455.066ENSMUSG00000036572Upf3b9853.282Mus_musculus
ENSATEG00000018742upf3b9455.286MGP_PahariEiJ_G0031543Upf3b9853.668Mus_pahari
ENSATEG00000018742upf3b9455.066MGP_SPRETEiJ_G0034152Upf3b9853.282Mus_spretus
ENSATEG00000018742upf3b9653.895ENSMPUG00000001531UPF3B9957.419Mustela_putorius_furo
ENSATEG00000018742upf3b8647.912ENSMLUG00000015905UPF3A9746.744Myotis_lucifugus
ENSATEG00000018742upf3b9658.798ENSMLUG00000010821UPF3B9657.667Myotis_lucifugus
ENSATEG00000018742upf3b9456.416ENSNGAG00000008231Upf3b9457.174Nannospalax_galili
ENSATEG00000018742upf3b9157.343ENSNLEG00000014897UPF3B9756.774Nomascus_leucogenys
ENSATEG00000018742upf3b6880.645ENSMEUG00000015615UPF3B8180.380Notamacropus_eugenii
ENSATEG00000018742upf3b9656.250ENSODEG00000002186-9654.762Octodon_degus
ENSATEG00000018742upf3b10083.940ENSONIG00000002536upf3b10083.726Oreochromis_niloticus
ENSATEG00000018742upf3b8243.702ENSOANG00000006985-5554.237Ornithorhynchus_anatinus
ENSATEG00000018742upf3b9056.905ENSOANG00000002594-9755.819Ornithorhynchus_anatinus
ENSATEG00000018742upf3b9457.849ENSOCUG00000010213UPF3B9457.112Oryctolagus_cuniculus
ENSATEG00000018742upf3b10077.754ENSORLG00000001026upf3b10076.674Oryzias_latipes
ENSATEG00000018742upf3b9253.034ENSORLG00000010911upf3a8952.135Oryzias_latipes
ENSATEG00000018742upf3b9251.927ENSORLG00020014317upf3a8952.262Oryzias_latipes_hni
ENSATEG00000018742upf3b10077.322ENSORLG00020003758upf3b10076.654Oryzias_latipes_hni
ENSATEG00000018742upf3b9251.936ENSORLG00015017339upf3a5152.164Oryzias_latipes_hsok
ENSATEG00000018742upf3b10076.890ENSORLG00015012954upf3b10075.810Oryzias_latipes_hsok
ENSATEG00000018742upf3b9250.227ENSOMEG00000014425upf3a8952.466Oryzias_melastigma
ENSATEG00000018742upf3b10077.106ENSOMEG00000014736upf3b10076.674Oryzias_melastigma
ENSATEG00000018742upf3b6862.349ENSOGAG00000004643-9458.537Otolemur_garnettii
ENSATEG00000018742upf3b9358.093ENSOGAG00000033003-9657.556Otolemur_garnettii
ENSATEG00000018742upf3b9345.602ENSOARG00000007869-9244.335Ovis_aries
ENSATEG00000018742upf3b9656.224ENSOARG00000016051-9456.531Ovis_aries
ENSATEG00000018742upf3b9050.116ENSOARG00000009004UPF3A8647.332Ovis_aries
ENSATEG00000018742upf3b8850.000ENSPPAG00000042267UPF3A8349.034Pan_paniscus
ENSATEG00000018742upf3b9555.460ENSPPAG00000040390UPF3B9757.204Pan_paniscus
ENSATEG00000018742upf3b9658.584ENSPPRG00000023536UPF3B9657.451Panthera_pardus
ENSATEG00000018742upf3b9655.368ENSPTIG00000015264UPF3B9656.211Panthera_tigris_altaica
ENSATEG00000018742upf3b9555.460ENSPTRG00000022228UPF3B9757.204Pan_troglodytes
ENSATEG00000018742upf3b8638.710ENSPTRG00000041835-8637.850Pan_troglodytes
ENSATEG00000018742upf3b8638.213ENSPTRG00000041187-8639.066Pan_troglodytes
ENSATEG00000018742upf3b9555.460ENSPANG00000000900UPF3B9769.378Papio_anubis
ENSATEG00000018742upf3b9048.132ENSPKIG00000004422upf3a9447.321Paramormyrops_kingsleyae
ENSATEG00000018742upf3b10068.094ENSPKIG00000019226upf3b9386.111Paramormyrops_kingsleyae
ENSATEG00000018742upf3b8852.594ENSPSIG00000007468UPF3A5566.239Pelodiscus_sinensis
ENSATEG00000018742upf3b5664.259ENSPSIG00000005833UPF3B8864.800Pelodiscus_sinensis
ENSATEG00000018742upf3b5786.641ENSPMGG00000016067upf3b9586.641Periophthalmus_magnuspinnatus
ENSATEG00000018742upf3b9455.408ENSPEMG00000012352Upf3b9456.388Peromyscus_maniculatus_bairdii
ENSATEG00000018742upf3b7157.674ENSPCIG00000019590-6967.925Phascolarctos_cinereus
ENSATEG00000018742upf3b8960.680ENSPCIG00000028914UPF3B8559.854Phascolarctos_cinereus
ENSATEG00000018742upf3b8950.591ENSPLAG00000011960upf3a7662.879Poecilia_latipinna
ENSATEG00000018742upf3b10080.172ENSPLAG00000019922upf3b10079.526Poecilia_latipinna
ENSATEG00000018742upf3b10080.172ENSPLAG00000005105upf3b10079.526Poecilia_latipinna
ENSATEG00000018742upf3b5874.342ENSPMEG00000000836upf3a8451.818Poecilia_mexicana
ENSATEG00000018742upf3b10079.741ENSPMEG00000023532upf3b10079.095Poecilia_mexicana
ENSATEG00000018742upf3b6460.748ENSPPYG00000020675-6369.194Pongo_abelii
ENSATEG00000018742upf3b9456.989ENSPCAG00000009464UPF3B9456.438Procavia_capensis
ENSATEG00000018742upf3b9459.471ENSPCOG00000021960UPF3B9458.537Propithecus_coquereli
ENSATEG00000018742upf3b9448.718ENSPVAG00000014075UPF3B9447.527Pteropus_vampyrus
ENSATEG00000018742upf3b10084.233ENSPNYG00000009846upf3b10083.369Pundamilia_nyererei
ENSATEG00000018742upf3b9444.889ENSPNAG00000019532upf3a9349.780Pygocentrus_nattereri
ENSATEG00000018742upf3b10071.975ENSPNAG00000021528upf3b10084.884Pygocentrus_nattereri
ENSATEG00000018742upf3b9455.066ENSRNOG00000039994Upf3b9456.264Rattus_norvegicus
ENSATEG00000018742upf3b8054.474ENSRBIG00000037219UPF3B9657.784Rhinopithecus_bieti
ENSATEG00000018742upf3b9555.460ENSRROG00000041031UPF3B9769.378Rhinopithecus_roxellana
ENSATEG00000018742upf3b9758.030ENSSBOG00000019740UPF3B9968.900Saimiri_boliviensis_boliviensis
ENSATEG00000018742upf3b8951.651ENSSHAG00000009895UPF3A9449.315Sarcophilus_harrisii
ENSATEG00000018742upf3b9458.901ENSSHAG00000008634UPF3B9458.590Sarcophilus_harrisii
ENSATEG00000018742upf3b10069.247ENSSFOG00015005614upf3b10069.677Scleropages_formosus
ENSATEG00000018742upf3b10082.013ENSSMAG00000012913upf3b10091.406Scophthalmus_maximus
ENSATEG00000018742upf3b8943.897ENSSDUG00000009680upf3a5778.495Seriola_dumerili
ENSATEG00000018742upf3b10087.957ENSSDUG00000005682upf3b10088.817Seriola_dumerili
ENSATEG00000018742upf3b10087.957ENSSLDG00000003130upf3b10088.817Seriola_lalandi_dorsalis
ENSATEG00000018742upf3b8653.938ENSSARG00000004147UPF3B9458.019Sorex_araneus
ENSATEG00000018742upf3b9857.620ENSSPUG00000013082UPF3B9856.639Sphenodon_punctatus
ENSATEG00000018742upf3b9988.043ENSSPAG00000009989upf3b9988.043Stegastes_partitus
ENSATEG00000018742upf3b9459.031ENSSSCG00000012617UPF3B9458.093Sus_scrofa
ENSATEG00000018742upf3b8863.725ENSTGUG00000003413UPF3B9561.520Taeniopygia_guttata
ENSATEG00000018742upf3b8754.612ENSTGUG00000009493UPF3A9949.882Taeniopygia_guttata
ENSATEG00000018742upf3b9051.069ENSTRUG00000012730upf3a8551.415Takifugu_rubripes
ENSATEG00000018742upf3b10077.754ENSTRUG00000010645upf3b10077.754Takifugu_rubripes
ENSATEG00000018742upf3b8844.310ENSTNIG00000014973upf3a9945.742Tetraodon_nigroviridis
ENSATEG00000018742upf3b10068.026ENSTNIG00000015763upf3b10065.451Tetraodon_nigroviridis
ENSATEG00000018742upf3b9449.138ENSTBEG00000003229UPF3B9448.922Tupaia_belangeri
ENSATEG00000018742upf3b9457.522ENSUAMG00000024565UPF3B8862.281Ursus_americanus
ENSATEG00000018742upf3b8756.436ENSUMAG00000002150UPF3B8457.072Ursus_maritimus
ENSATEG00000018742upf3b8159.335ENSVPAG00000009971UPF3B9358.205Vicugna_pacos
ENSATEG00000018742upf3b9457.080ENSVVUG00000011594UPF3B9769.378Vulpes_vulpes
ENSATEG00000018742upf3b8745.192ENSXETG00000002572upf3a9044.146Xenopus_tropicalis
ENSATEG00000018742upf3b9654.566ENSXETG00000007440upf3b8577.551Xenopus_tropicalis
ENSATEG00000018742upf3b10072.747ENSXCOG00000016586upf3b9888.776Xiphophorus_couchianus
ENSATEG00000018742upf3b5873.333ENSXMAG00000013452upf3a8353.682Xiphophorus_maculatus
ENSATEG00000018742upf3b10078.879ENSXMAG00000013680upf3b10078.233Xiphophorus_maculatus

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