EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
Description
Ensembl ID
ENSATEG00000020470 (Gene tree)
Gene ID
-
Gene Symbol
lsm5
Alias
zgc:171959
Full Name
LSM5 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type
protein_coding
Species
Anabas_testudineus
Status
putative
Strand
Plus strand
Length
5725 bases
Position
chrOOHO01000004.1:17330021-17335745
Accession
ZDB-GENE-070822-23
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSATEP00000029669LSMPF01423.222.9e-1911
ENSATEP00000029682LSMPF01423.223.5e-0611
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSATET00000030131-180-ENSATEP0000002968259 (aa)--
ENSATET00000030117-4418-ENSATEP00000029669135 (aa)--
Gene Model
Click here to download ENSATEG00000020470's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSATEG00000020470's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSATEG00000020470lsm57693.333ENSG00000106355LSM59093.902Homo_sapiens
ENSATEG00000020470lsm57695.556ENSAPOG00000011743LSM59495.238Acanthochromis_polyacanthus
ENSATEG00000020470lsm510061.538ENSAPOG00000020779LSM59696.341Acanthochromis_polyacanthus
ENSATEG00000020470lsm510059.341ENSAMEG00000006700LSM59093.902Ailuropoda_melanoleuca
ENSATEG00000020470lsm592100.000ENSACIG00000019185lsm596100.000Amphilophus_citrinellus
ENSATEG00000020470lsm510061.538ENSAOCG00000001636lsm59096.341Amphiprion_ocellaris
ENSATEG00000020470lsm510061.538ENSAPEG00000008151lsm59096.341Amphiprion_percula
ENSATEG00000020470lsm57695.556ENSAPEG00000008201lsm58598.113Amphiprion_percula
ENSATEG00000020470lsm57393.023ENSAPLG00000008171LSM59197.015Anas_platyrhynchos
ENSATEG00000020470lsm510059.494ENSANAG00000037758-9071.084Aotus_nancymaae
ENSATEG00000020470lsm59856.667ENSANAG00000024192-8491.358Aotus_nancymaae
ENSATEG00000020470lsm510060.440ENSANAG00000034409-9095.122Aotus_nancymaae
ENSATEG00000020470lsm55798.701ENSACLG00000012891lsm58898.701Astatotilapia_calliptera
ENSATEG00000020470lsm510060.638ENSAMXG00000035543lsm59081.176Astyanax_mexicanus
ENSATEG00000020470lsm510059.341ENSBTAG00000002332LSM59093.902Bos_taurus
ENSATEG00000020470lsm510045.055WBGene00003079lsm-59070.732Caenorhabditis_elegans
ENSATEG00000020470lsm510059.341ENSCJAG00000047379LSM58184.615Callithrix_jacchus
ENSATEG00000020470lsm59854.444ENSCJAG00000005678-9181.481Callithrix_jacchus
ENSATEG00000020470lsm510058.242ENSCAFG00000019261-8895.000Canis_familiaris
ENSATEG00000020470lsm510059.341ENSCAFG00020004946LSM59093.902Canis_lupus_dingo
ENSATEG00000020470lsm55572.973ENSCHIG00000021428-8974.359Capra_hircus
ENSATEG00000020470lsm510059.341ENSCHIG00000024539LSM59093.902Capra_hircus
ENSATEG00000020470lsm510057.143ENSCHIG00000004079-9091.463Capra_hircus
ENSATEG00000020470lsm510043.243ENSTSYG00000036637-8868.293Carlito_syrichta
ENSATEG00000020470lsm510060.000ENSTSYG00000028728-8980.488Carlito_syrichta
ENSATEG00000020470lsm510059.341ENSTSYG00000006449-9093.902Carlito_syrichta
ENSATEG00000020470lsm510058.333ENSTSYG00000026530-8274.390Carlito_syrichta
ENSATEG00000020470lsm57682.222ENSCAPG00000006980LSM58798.462Cavia_aperea
ENSATEG00000020470lsm510093.220ENSCPOG00000036386LSM510093.220Cavia_porcellus
ENSATEG00000020470lsm510059.341ENSCCAG00000000821-9092.683Cebus_capucinus
ENSATEG00000020470lsm510059.341ENSCCAG00000037808-9093.902Cebus_capucinus
ENSATEG00000020470lsm510062.025ENSCCAG00000032792-9072.289Cebus_capucinus
ENSATEG00000020470lsm510057.143ENSCCAG00000037334-10057.143Cebus_capucinus
ENSATEG00000020470lsm510057.143ENSCCAG00000032123-9091.463Cebus_capucinus
ENSATEG00000020470lsm59848.889ENSCATG00000014790-9590.909Cercocebus_atys
ENSATEG00000020470lsm57693.333ENSCATG00000040218LSM59093.902Cercocebus_atys
ENSATEG00000020470lsm510051.111ENSCLAG00000005062-8178.049Chinchilla_lanigera
ENSATEG00000020470lsm510093.220ENSCLAG00000000202LSM510093.220Chinchilla_lanigera
ENSATEG00000020470lsm55694.667ENSCHOG00000005335LSM59994.667Choloepus_hoffmanni
ENSATEG00000020470lsm510059.341ENSCPBG00000013685LSM59093.902Chrysemys_picta_bellii
ENSATEG00000020470lsm59253.488ENSCING00000020625-8787.013Ciona_intestinalis
ENSATEG00000020470lsm59253.488ENSCSAVG00000001439-8887.013Ciona_savignyi
ENSATEG00000020470lsm57693.333ENSCANG00000039909LSM59093.902Colobus_angolensis_palliatus
ENSATEG00000020470lsm510093.220ENSCGRG00001015461Lsm510093.220Cricetulus_griseus_chok1gshd
ENSATEG00000020470lsm57693.333ENSCGRG00000007677Lsm58896.970Cricetulus_griseus_crigri
ENSATEG00000020470lsm510094.915ENSCSEG00000015286lsm510094.915Cynoglossus_semilaevis
ENSATEG00000020470lsm57695.556ENSCVAG00000004262lsm59098.780Cyprinodon_variegatus
ENSATEG00000020470lsm57695.556ENSDARG00000071573lsm59095.122Danio_rerio
ENSATEG00000020470lsm59352.874ENSDNOG00000049495-9082.927Dasypus_novemcinctus
ENSATEG00000020470lsm510059.341ENSDNOG00000034958LSM59295.122Dasypus_novemcinctus
ENSATEG00000020470lsm510093.220ENSDORG00000009422Lsm510093.220Dipodomys_ordii
ENSATEG00000020470lsm57577.273FBgn0035675CG66108980.247Drosophila_melanogaster
ENSATEG00000020470lsm59753.750ENSETEG00000010651-8773.750Echinops_telfairi
ENSATEG00000020470lsm55891.176ENSETEG00000016074-8177.778Echinops_telfairi
ENSATEG00000020470lsm510059.341ENSETEG00000018068LSM59093.902Echinops_telfairi
ENSATEG00000020470lsm57667.347ENSETEG00000000777-9064.557Echinops_telfairi
ENSATEG00000020470lsm55687.879ENSETEG00000001469-8771.605Echinops_telfairi
ENSATEG00000020470lsm510058.242ENSEBUG00000008540lsm59092.683Eptatretus_burgeri
ENSATEG00000020470lsm510059.341ENSEASG00005003500LSM59093.902Equus_asinus_asinus
ENSATEG00000020470lsm510053.659ENSECAG00000018445LSM58978.049Equus_caballus
ENSATEG00000020470lsm57686.667ENSEEUG00000004102LSM58291.837Erinaceus_europaeus
ENSATEG00000020470lsm510063.736ENSELUG00000007792lsm59097.561Esox_lucius
ENSATEG00000020470lsm510059.341ENSFCAG00000000230LSM59093.902Felis_catus
ENSATEG00000020470lsm57693.333ENSFALG00000001892LSM58197.015Ficedula_albicollis
ENSATEG00000020470lsm510093.220ENSFDAG00000008767LSM510093.220Fukomys_damarensis
ENSATEG00000020470lsm55977.143ENSFDAG00000008685-8867.568Fukomys_damarensis
ENSATEG00000020470lsm58179.167ENSFHEG00000004011lsm58478.205Fundulus_heteroclitus
ENSATEG00000020470lsm59863.333ENSGMOG00000018235lsm59198.780Gadus_morhua
ENSATEG00000020470lsm510059.341ENSGALG00000041625LSM59093.902Gallus_gallus
ENSATEG00000020470lsm57695.556ENSGAFG00000016824lsm58598.113Gambusia_affinis
ENSATEG00000020470lsm510062.637ENSGACG00000005528lsm59097.561Gasterosteus_aculeatus
ENSATEG00000020470lsm510059.341ENSGAGG00000015593LSM59093.902Gopherus_agassizii
ENSATEG00000020470lsm510059.341ENSGGOG00000043469LSM59093.902Gorilla_gorilla
ENSATEG00000020470lsm55798.701ENSHBUG00000013773lsm58898.701Haplochromis_burtoni
ENSATEG00000020470lsm510093.220ENSHGLG00000011765LSM510093.220Heterocephalus_glaber_female
ENSATEG00000020470lsm510088.136ENSHGLG00100015610LSM510088.136Heterocephalus_glaber_male
ENSATEG00000020470lsm510094.915ENSHCOG00000008288lsm510094.915Hippocampus_comes
ENSATEG00000020470lsm510062.637ENSIPUG00000021095LSM59096.341Ictalurus_punctatus
ENSATEG00000020470lsm57680.000ENSSTOG00000033886-8879.487Ictidomys_tridecemlineatus
ENSATEG00000020470lsm510093.220ENSSTOG00000012662LSM510093.220Ictidomys_tridecemlineatus
ENSATEG00000020470lsm510057.895ENSJJAG00000016144-9257.895Jaculus_jaculus
ENSATEG00000020470lsm510089.831ENSJJAG00000012145-10089.831Jaculus_jaculus
ENSATEG00000020470lsm55987.342ENSJJAG00000004475-10087.342Jaculus_jaculus
ENSATEG00000020470lsm510060.440ENSKMAG00000021861lsm59095.122Kryptolebias_marmoratus
ENSATEG00000020470lsm57188.542ENSLBEG00000009235LSM57688.542Labrus_bergylta
ENSATEG00000020470lsm510060.440ENSLACG00000022448LSM59095.122Latimeria_chalumnae
ENSATEG00000020470lsm510062.637ENSLOCG00000012903lsm59096.341Lepisosteus_oculatus
ENSATEG00000020470lsm510059.494ENSLAFG00000027938-10059.494Loxodonta_africana
ENSATEG00000020470lsm510059.341ENSLAFG00000029579LSM59093.902Loxodonta_africana
ENSATEG00000020470lsm510058.242ENSMFAG00000030152-9091.463Macaca_fascicularis
ENSATEG00000020470lsm510059.341ENSMFAG00000038508LSM59093.902Macaca_fascicularis
ENSATEG00000020470lsm59850.000ENSMMUG00000039822-8982.716Macaca_mulatta
ENSATEG00000020470lsm510058.242ENSMMUG00000030131-9091.463Macaca_mulatta
ENSATEG00000020470lsm510058.242ENSMNEG00000037935-9091.463Macaca_nemestrina
ENSATEG00000020470lsm57693.333ENSMNEG00000015331LSM59093.902Macaca_nemestrina
ENSATEG00000020470lsm510059.341ENSMLEG00000024945LSM59093.902Mandrillus_leucophaeus
ENSATEG00000020470lsm59748.315ENSMLEG00000034037-8981.250Mandrillus_leucophaeus
ENSATEG00000020470lsm510056.044ENSMAMG00000012869lsm59089.024Mastacembelus_armatus
ENSATEG00000020470lsm55798.701ENSMZEG00005019554lsm58898.701Maylandia_zebra
ENSATEG00000020470lsm510059.341ENSMGAG00000012117LSM59093.902Meleagris_gallopavo
ENSATEG00000020470lsm510058.242ENSMAUG00000008132-9092.683Mesocricetus_auratus
ENSATEG00000020470lsm510093.220ENSMAUG00000012222Lsm510093.220Mesocricetus_auratus
ENSATEG00000020470lsm510059.341ENSMICG00000005353LSM59093.902Microcebus_murinus
ENSATEG00000020470lsm59870.270ENSMICG00000033928-9670.270Microcebus_murinus
ENSATEG00000020470lsm510093.220ENSMOCG00000012018Lsm510093.220Microtus_ochrogaster
ENSATEG00000020470lsm57695.556ENSMMOG00000004026lsm57798.507Mola_mola
ENSATEG00000020470lsm57693.333ENSMODG00000013274-8794.444Monodelphis_domestica
ENSATEG00000020470lsm57688.889ENSMALG00000010343lsm58592.453Monopterus_albus
ENSATEG00000020470lsm510093.220MGP_CAROLIEiJ_G0028421Lsm510093.220Mus_caroli
ENSATEG00000020470lsm510093.220ENSMUSG00000091625Lsm510093.220Mus_musculus
ENSATEG00000020470lsm510093.220MGP_PahariEiJ_G0022171Lsm510093.220Mus_pahari
ENSATEG00000020470lsm510093.220MGP_SPRETEiJ_G0029423Lsm510093.220Mus_spretus
ENSATEG00000020470lsm510059.341ENSMLUG00000017028LSM59093.902Myotis_lucifugus
ENSATEG00000020470lsm510059.770ENSNGAG00000017707-9080.952Nannospalax_galili
ENSATEG00000020470lsm510093.220ENSNGAG00000024142Lsm510093.220Nannospalax_galili
ENSATEG00000020470lsm59861.250ENSNGAG00000022569-8473.750Nannospalax_galili
ENSATEG00000020470lsm57695.556ENSNBRG00000011386lsm56495.833Neolamprologus_brichardi
ENSATEG00000020470lsm510059.341ENSNLEG00000015268LSM59093.902Nomascus_leucogenys
ENSATEG00000020470lsm57693.333ENSOPRG00000002443LSM58896.970Ochotona_princeps
ENSATEG00000020470lsm510059.341ENSODEG00000019072-9093.902Octodon_degus
ENSATEG00000020470lsm510093.220ENSODEG00000008258-10093.220Octodon_degus
ENSATEG00000020470lsm56951.220ENSOANG00000014540-9358.571Ornithorhynchus_anatinus
ENSATEG00000020470lsm510059.341ENSOCUG00000029043LSM59093.902Oryctolagus_cuniculus
ENSATEG00000020470lsm510060.440ENSORLG00000027725lsm55396.341Oryzias_latipes
ENSATEG00000020470lsm57693.333ENSORLG00020003019lsm58396.429Oryzias_latipes_hni
ENSATEG00000020470lsm510060.440ENSORLG00015003338lsm59096.341Oryzias_latipes_hsok
ENSATEG00000020470lsm57693.333ENSOMEG00000001078lsm59095.122Oryzias_melastigma
ENSATEG00000020470lsm510059.341ENSOGAG00000013892LSM59093.902Otolemur_garnettii
ENSATEG00000020470lsm510059.341ENSOARG00000006944LSM59093.902Ovis_aries
ENSATEG00000020470lsm510059.341ENSPPAG00000003697-9093.902Pan_paniscus
ENSATEG00000020470lsm510059.341ENSPPRG00000002550LSM59093.902Panthera_pardus
ENSATEG00000020470lsm510059.341ENSPTIG00000015604LSM59093.902Panthera_tigris_altaica
ENSATEG00000020470lsm510059.341ENSPTRG00000019057LSM59093.902Pan_troglodytes
ENSATEG00000020470lsm510044.828ENSPTRG00000049488-9078.049Pan_troglodytes
ENSATEG00000020470lsm510059.341ENSPANG00000032179-9093.902Papio_anubis
ENSATEG00000020470lsm59850.000ENSPANG00000032538-8982.716Papio_anubis
ENSATEG00000020470lsm510057.143ENSPANG00000033477-9090.244Papio_anubis
ENSATEG00000020470lsm510062.637ENSPKIG00000011910lsm59096.341Paramormyrops_kingsleyae
ENSATEG00000020470lsm57393.023ENSPSIG00000014796LSM59197.015Pelodiscus_sinensis
ENSATEG00000020470lsm57695.556ENSPMGG00000011699lsm58598.113Periophthalmus_magnuspinnatus
ENSATEG00000020470lsm55684.848ENSPEMG00000022375-9065.060Peromyscus_maniculatus_bairdii
ENSATEG00000020470lsm510063.736ENSPFOG00000001433lsm59098.780Poecilia_formosa
ENSATEG00000020470lsm510063.736ENSPLAG00000009665lsm59098.780Poecilia_latipinna
ENSATEG00000020470lsm510063.736ENSPMEG00000022265lsm59098.780Poecilia_mexicana
ENSATEG00000020470lsm57695.556ENSPREG00000022452lsm58598.113Poecilia_reticulata
ENSATEG00000020470lsm510057.143ENSPPYG00000017661LSM59090.244Pongo_abelii
ENSATEG00000020470lsm56095.062ENSPCAG00000013740LSM510095.062Procavia_capensis
ENSATEG00000020470lsm510059.341ENSPVAG00000009786LSM59093.902Pteropus_vampyrus
ENSATEG00000020470lsm55798.701ENSPNYG00000022236lsm58898.701Pundamilia_nyererei
ENSATEG00000020470lsm510062.637ENSPNAG00000001887lsm59096.341Pygocentrus_nattereri
ENSATEG00000020470lsm510059.341ENSRNOG00000042126Lsm59093.902Rattus_norvegicus
ENSATEG00000020470lsm510057.609ENSRNOG00000027305AABR07065089.19090.361Rattus_norvegicus
ENSATEG00000020470lsm510059.341ENSRBIG00000030340-9093.902Rhinopithecus_bieti
ENSATEG00000020470lsm510059.341ENSRBIG00000030714-9093.902Rhinopithecus_bieti
ENSATEG00000020470lsm510058.242ENSRBIG00000024431-9092.683Rhinopithecus_bieti
ENSATEG00000020470lsm57693.333ENSRBIG00000027803-9093.902Rhinopithecus_bieti
ENSATEG00000020470lsm510059.341ENSRROG00000023884-9093.902Rhinopithecus_roxellana
ENSATEG00000020470lsm510059.341ENSRROG00000004655-9093.902Rhinopithecus_roxellana
ENSATEG00000020470lsm57693.333ENSRROG00000042782-9093.902Rhinopithecus_roxellana
ENSATEG00000020470lsm55446.154YER146W-8446.154Saccharomyces_cerevisiae
ENSATEG00000020470lsm510059.341ENSSBOG00000012312LSM59093.902Saimiri_boliviensis_boliviensis
ENSATEG00000020470lsm510059.494ENSSBOG00000034794-10059.494Saimiri_boliviensis_boliviensis
ENSATEG00000020470lsm510057.143ENSSBOG00000019124-9092.683Saimiri_boliviensis_boliviensis
ENSATEG00000020470lsm510062.637ENSSFOG00015010099lsm59096.341Scleropages_formosus
ENSATEG00000020470lsm510098.305ENSSMAG00000007895lsm510098.305Scophthalmus_maximus
ENSATEG00000020470lsm57695.556ENSSDUG00000010762lsm58598.113Seriola_dumerili
ENSATEG00000020470lsm510098.305ENSSLDG00000025242lsm510098.305Seriola_lalandi_dorsalis
ENSATEG00000020470lsm56973.171ENSSLDG00000008014-8776.712Seriola_lalandi_dorsalis
ENSATEG00000020470lsm57693.333ENSSPUG00000002690LSM59091.463Sphenodon_punctatus
ENSATEG00000020470lsm510096.610ENSSPAG00000005435lsm510096.610Stegastes_partitus
ENSATEG00000020470lsm55184.058ENSSSCG00000029661-9684.058Sus_scrofa
ENSATEG00000020470lsm57693.333ENSSSCG00000026064-9093.902Sus_scrofa
ENSATEG00000020470lsm510058.242ENSTGUG00000017539LSM59092.683Taeniopygia_guttata
ENSATEG00000020470lsm58571.901ENSTRUG00000017749lsm58971.901Takifugu_rubripes
ENSATEG00000020470lsm55797.403ENSTNIG00000008695lsm58897.403Tetraodon_nigroviridis
ENSATEG00000020470lsm510059.341ENSTBEG00000004876LSM59093.902Tupaia_belangeri
ENSATEG00000020470lsm510059.341ENSTTRG00000004237LSM59093.902Tursiops_truncatus
ENSATEG00000020470lsm59858.889ENSUMAG00000002625LSM55993.902Ursus_maritimus
ENSATEG00000020470lsm510059.341ENSVPAG00000009985LSM59093.902Vicugna_pacos
ENSATEG00000020470lsm510059.341ENSVVUG00000021311LSM59093.902Vulpes_vulpes
ENSATEG00000020470lsm56195.122ENSXETG00000026465lsm510095.122Xenopus_tropicalis
ENSATEG00000020470lsm57695.556ENSXCOG00000015348lsm58598.113Xiphophorus_couchianus
ENSATEG00000020470lsm510063.736ENSXMAG00000029988lsm59098.780Xiphophorus_maculatus

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