EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSATEG00000021017 (Gene tree)
Gene ID: 113170769
Gene Symbol: prdm1a (1 of many)
Alias: Blimp-1|Blimp1|U boot|narrowminded|nrd|prdm1|u-boot|ubo|wu:fb99c12|zgc:91885
Full Name: PR domain containing 1a%2C with ZNF domain
Gene Type: protein_coding
Species: Anabas_testudineus
Status: putative
Strand: Minus strand
Length: 15882 bases
Position: chrOOHO01000006.1:22478056-22493937
Accession: ZDB-GENE-030131-2193
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSATEP00000030455	zf-C2H2	PF00096.26	3.1e-16	1	3
ENSATEP00000030455	zf-C2H2	PF00096.26	3.1e-16	2	3
ENSATEP00000030455	zf-C2H2	PF00096.26	3.1e-16	3	3
ENSATEP00000030500	zf-C2H2	PF00096.26	3.7e-09	1	1
ENSATEP00000030455	zf-met	PF12874.7	7.3e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSATET00000030916	-	2283	-	ENSATEP00000030455	760 (aa)	-	-
ENSATET00000030961	-	2523	-	ENSATEP00000030500	840 (aa)	-	-

Gene Model

Click here to download ENSATEG00000021017's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSATEG00000021017's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSATEG00000021017	prdm1a	59	63.380	ENSATEG00000006924	prdm1b	54	63.380
ENSATEG00000021017	prdm1a	99	45.568	ENSATEG00000014034	-	95	45.729

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSATEG00000021017	prdm1a	99	46.379	ENSAPOG00000014135	-	99	35.580	Acanthochromis_polyacanthus
ENSATEG00000021017	prdm1a	58	68.182	ENSACIG00000014426	prdm1b	55	68.182	Amphilophus_citrinellus
ENSATEG00000021017	prdm1a	98	45.844	ENSACIG00000009747	-	94	45.912	Amphilophus_citrinellus
ENSATEG00000021017	prdm1a	53	61.765	ENSAPEG00000019826	prdm1b	56	61.765	Amphiprion_percula
ENSATEG00000021017	prdm1a	99	84.010	ENSCSEG00000009707	prdm1a	99	84.127	Cynoglossus_semilaevis
ENSATEG00000021017	prdm1a	99	81.184	ENSCVAG00000019081	prdm1a	99	81.184	Cyprinodon_variegatus
ENSATEG00000021017	prdm1a	60	54.749	ENSCVAG00000016746	prdm1b	64	55.689	Cyprinodon_variegatus
ENSATEG00000021017	prdm1a	89	43.843	ENSGAFG00000013012	-	62	62.400	Gambusia_affinis
ENSATEG00000021017	prdm1a	70	55.747	ENSGAFG00000016191	prdm1b	63	60.000	Gambusia_affinis
ENSATEG00000021017	prdm1a	73	54.802	ENSGACG00000002716	prdm1b	67	55.152	Gasterosteus_aculeatus
ENSATEG00000021017	prdm1a	56	61.972	ENSHCOG00000003617	prdm1b	67	61.972	Hippocampus_comes
ENSATEG00000021017	prdm1a	60	56.757	ENSIPUG00000013740	prdm1b	64	56.463	Ictalurus_punctatus
ENSATEG00000021017	prdm1a	99	78.599	ENSKMAG00000017597	prdm1a	97	78.665	Kryptolebias_marmoratus
ENSATEG00000021017	prdm1a	98	41.780	ENSKMAG00000016247	-	99	33.518	Kryptolebias_marmoratus
ENSATEG00000021017	prdm1a	99	40.201	ENSLBEG00000020955	prdm1b	71	66.197	Labrus_bergylta
ENSATEG00000021017	prdm1a	99	44.051	ENSLOCG00000004978	prdm1b	76	59.091	Lepisosteus_oculatus
ENSATEG00000021017	prdm1a	56	55.435	ENSMMOG00000013458	prdm1b	51	55.435	Mola_mola
ENSATEG00000021017	prdm1a	97	45.817	ENSMALG00000000462	-	95	36.407	Monopterus_albus
ENSATEG00000021017	prdm1a	57	57.778	ENSONIG00000013583	prdm1b	60	57.927	Oreochromis_niloticus
ENSATEG00000021017	prdm1a	98	45.000	ENSONIG00000014709	-	94	44.204	Oreochromis_niloticus
ENSATEG00000021017	prdm1a	56	61.194	ENSORLG00000010025	prdm1b	72	49.515	Oryzias_latipes
ENSATEG00000021017	prdm1a	57	59.420	ENSORLG00015009022	prdm1b	65	59.420	Oryzias_latipes_hsok
ENSATEG00000021017	prdm1a	53	60.619	ENSPKIG00000022335	prdm1b	62	55.513	Paramormyrops_kingsleyae
ENSATEG00000021017	prdm1a	89	43.937	ENSPFOG00000003103	prdm1b	99	42.213	Poecilia_formosa
ENSATEG00000021017	prdm1a	57	61.111	ENSPLAG00000018491	prdm1b	73	61.111	Poecilia_latipinna
ENSATEG00000021017	prdm1a	57	61.111	ENSPMEG00000007869	prdm1b	74	60.563	Poecilia_mexicana
ENSATEG00000021017	prdm1a	70	55.682	ENSPREG00000011327	prdm1b	67	61.111	Poecilia_reticulata
ENSATEG00000021017	prdm1a	100	53.791	ENSPVAG00000011732	PRDM1	99	53.406	Pteropus_vampyrus
ENSATEG00000021017	prdm1a	99	62.162	ENSPNAG00000028442	prdm1a	94	61.479	Pygocentrus_nattereri
ENSATEG00000021017	prdm1a	58	61.207	ENSSFOG00015021896	prdm1b	61	61.207	Scleropages_formosus
ENSATEG00000021017	prdm1a	79	52.823	ENSSMAG00000017518	-	72	53.279	Scophthalmus_maximus
ENSATEG00000021017	prdm1a	55	60.241	ENSSMAG00000020467	prdm1b	61	70.000	Scophthalmus_maximus
ENSATEG00000021017	prdm1a	59	61.972	ENSSDUG00000020610	prdm1b	60	61.972	Seriola_dumerili
ENSATEG00000021017	prdm1a	97	45.636	ENSSLDG00000001957	-	87	54.335	Seriola_lalandi_dorsalis
ENSATEG00000021017	prdm1a	73	55.682	ENSSLDG00000021973	prdm1b	71	61.972	Seriola_lalandi_dorsalis
ENSATEG00000021017	prdm1a	56	61.972	ENSSPAG00000000803	prdm1b	67	61.972	Stegastes_partitus
ENSATEG00000021017	prdm1a	99	45.105	ENSSPAG00000009830	-	94	44.625	Stegastes_partitus
ENSATEG00000021017	prdm1a	83	75.725	ENSTNIG00000003926	prdm1a	99	75.573	Tetraodon_nigroviridis
ENSATEG00000021017	prdm1a	70	55.682	ENSXCOG00000018920	prdm1b	74	55.621	Xiphophorus_couchianus
ENSATEG00000021017	prdm1a	70	55.114	ENSXMAG00000016765	prdm1b	69	59.722	Xiphophorus_maculatus