EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSBTAG00000000179 (Gene tree)
Gene ID: 525521
Gene Symbol: RPUSD1
Alias: -
Full Name: Bos taurus RNA pseudouridylate synthase domain containing 1 (RPUSD1)%2C mRNA.
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Minus strand
Length: 3202 bases
Position: chr25:666146-669347
Accession: NM_001075874
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000000204	PseudoU_synth_2	PF00849.22	2.4e-25	1	1
ENSBTAP00000067589	PseudoU_synth_2	PF00849.22	2.4e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000084979	-	2394	XM_010819098	ENSBTAP00000067589	308 (aa)	XP_010817400	M5FKF2
ENSBTAT00000000204	-	1855	-	ENSBTAP00000000204	308 (aa)	-	Q17QT4

Gene Model

Click here to download ENSBTAG00000000179's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000000179's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000000179	RPUSD1	100	84.936	ENSG00000007376	RPUSD1	100	89.881	Homo_sapiens
ENSBTAG00000000179	RPUSD1	98	59.272	ENSAPOG00000022221	rpusd1	98	59.272	Acanthochromis_polyacanthus
ENSBTAG00000000179	RPUSD1	100	85.714	ENSAMEG00000007461	RPUSD1	100	85.065	Ailuropoda_melanoleuca
ENSBTAG00000000179	RPUSD1	98	60.131	ENSACIG00000015863	rpusd1	98	60.458	Amphilophus_citrinellus
ENSBTAG00000000179	RPUSD1	98	58.689	ENSAOCG00000021975	rpusd1	95	58.689	Amphiprion_ocellaris
ENSBTAG00000000179	RPUSD1	98	59.016	ENSAPEG00000001316	rpusd1	95	59.016	Amphiprion_percula
ENSBTAG00000000179	RPUSD1	79	68.033	ENSATEG00000002984	rpusd1	98	59.016	Anabas_testudineus
ENSBTAG00000000179	RPUSD1	79	62.500	ENSAPLG00000012316	RPUSD1	100	61.943	Anas_platyrhynchos
ENSBTAG00000000179	RPUSD1	99	68.387	ENSACAG00000008953	RPUSD1	100	68.078	Anolis_carolinensis
ENSBTAG00000000179	RPUSD1	100	84.936	ENSANAG00000024709	RPUSD1	100	86.538	Aotus_nancymaae
ENSBTAG00000000179	RPUSD1	98	53.488	ENSACLG00000013692	rpusd1	98	60.586	Astatotilapia_calliptera
ENSBTAG00000000179	RPUSD1	99	61.438	ENSAMXG00000019802	rpusd1	100	61.967	Astyanax_mexicanus
ENSBTAG00000000179	RPUSD1	100	85.577	ENSCJAG00000012253	RPUSD1	100	85.577	Callithrix_jacchus
ENSBTAG00000000179	RPUSD1	100	85.714	ENSCAFG00000019614	RPUSD1	100	86.039	Canis_familiaris
ENSBTAG00000000179	RPUSD1	100	85.714	ENSCAFG00020008891	RPUSD1	100	86.039	Canis_lupus_dingo
ENSBTAG00000000179	RPUSD1	100	97.727	ENSCHIG00000012872	RPUSD1	100	97.727	Capra_hircus
ENSBTAG00000000179	RPUSD1	100	83.601	ENSTSYG00000036934	RPUSD1	100	83.601	Carlito_syrichta
ENSBTAG00000000179	RPUSD1	100	86.039	ENSCAPG00000014219	RPUSD1	100	85.065	Cavia_aperea
ENSBTAG00000000179	RPUSD1	100	86.039	ENSCPOG00000034604	RPUSD1	100	85.065	Cavia_porcellus
ENSBTAG00000000179	RPUSD1	100	86.538	ENSCCAG00000034385	RPUSD1	100	86.538	Cebus_capucinus
ENSBTAG00000000179	RPUSD1	100	86.538	ENSCATG00000042983	RPUSD1	100	86.538	Cercocebus_atys
ENSBTAG00000000179	RPUSD1	100	85.390	ENSCLAG00000013966	RPUSD1	100	85.390	Chinchilla_lanigera
ENSBTAG00000000179	RPUSD1	100	86.538	ENSCSAG00000012121	RPUSD1	100	86.538	Chlorocebus_sabaeus
ENSBTAG00000000179	RPUSD1	99	66.019	ENSCPBG00000021101	RPUSD1	99	66.118	Chrysemys_picta_bellii
ENSBTAG00000000179	RPUSD1	91	88.612	ENSCANG00000028576	RPUSD1	97	89.338	Colobus_angolensis_palliatus
ENSBTAG00000000179	RPUSD1	100	84.416	ENSCGRG00001014253	Rpusd1	100	82.468	Cricetulus_griseus_chok1gshd
ENSBTAG00000000179	RPUSD1	100	84.416	ENSCGRG00000017995	Rpusd1	100	82.468	Cricetulus_griseus_crigri
ENSBTAG00000000179	RPUSD1	99	57.792	ENSCSEG00000018512	rpusd1	100	57.792	Cynoglossus_semilaevis
ENSBTAG00000000179	RPUSD1	98	59.136	ENSCVAG00000022746	rpusd1	98	58.804	Cyprinodon_variegatus
ENSBTAG00000000179	RPUSD1	99	64.262	ENSDARG00000060192	rpusd1	100	63.312	Danio_rerio
ENSBTAG00000000179	RPUSD1	100	82.051	ENSDNOG00000003721	RPUSD1	100	82.166	Dasypus_novemcinctus
ENSBTAG00000000179	RPUSD1	100	86.688	ENSDORG00000026656	Rpusd1	100	87.338	Dipodomys_ordii
ENSBTAG00000000179	RPUSD1	99	46.106	ENSEBUG00000008767	rpusd1	94	46.106	Eptatretus_burgeri
ENSBTAG00000000179	RPUSD1	100	85.759	ENSEASG00005018421	RPUSD1	76	86.709	Equus_asinus_asinus
ENSBTAG00000000179	RPUSD1	82	62.992	ENSELUG00000014307	rpusd1	88	57.377	Esox_lucius
ENSBTAG00000000179	RPUSD1	100	86.039	ENSFCAG00000010359	RPUSD1	100	85.390	Felis_catus
ENSBTAG00000000179	RPUSD1	99	67.213	ENSFALG00000003211	RPUSD1	100	67.213	Ficedula_albicollis
ENSBTAG00000000179	RPUSD1	100	86.039	ENSFDAG00000013398	RPUSD1	100	84.740	Fukomys_damarensis
ENSBTAG00000000179	RPUSD1	98	58.746	ENSFHEG00000004736	rpusd1	98	58.416	Fundulus_heteroclitus
ENSBTAG00000000179	RPUSD1	98	57.895	ENSGMOG00000010756	rpusd1	98	57.895	Gadus_morhua
ENSBTAG00000000179	RPUSD1	99	68.197	ENSGALG00000005315	RPUSD1	100	68.197	Gallus_gallus
ENSBTAG00000000179	RPUSD1	98	59.468	ENSGAFG00000009886	rpusd1	98	59.468	Gambusia_affinis
ENSBTAG00000000179	RPUSD1	81	66.534	ENSGACG00000014276	rpusd1	97	58.746	Gasterosteus_aculeatus
ENSBTAG00000000179	RPUSD1	99	66.343	ENSGAGG00000004181	RPUSD1	99	66.118	Gopherus_agassizii
ENSBTAG00000000179	RPUSD1	100	85.256	ENSGGOG00000013997	RPUSD1	100	85.256	Gorilla_gorilla
ENSBTAG00000000179	RPUSD1	82	67.984	ENSHBUG00000023728	rpusd1	98	60.261	Haplochromis_burtoni
ENSBTAG00000000179	RPUSD1	100	84.740	ENSHGLG00000002595	RPUSD1	100	85.065	Heterocephalus_glaber_female
ENSBTAG00000000179	RPUSD1	100	84.740	ENSHGLG00100014303	RPUSD1	100	85.065	Heterocephalus_glaber_male
ENSBTAG00000000179	RPUSD1	98	59.076	ENSHCOG00000002390	rpusd1	99	59.076	Hippocampus_comes
ENSBTAG00000000179	RPUSD1	99	64.169	ENSIPUG00000001570	rpusd1	99	64.052	Ictalurus_punctatus
ENSBTAG00000000179	RPUSD1	100	89.935	ENSSTOG00000004276	RPUSD1	100	88.636	Ictidomys_tridecemlineatus
ENSBTAG00000000179	RPUSD1	100	86.688	ENSJJAG00000015696	Rpusd1	100	85.390	Jaculus_jaculus
ENSBTAG00000000179	RPUSD1	98	59.801	ENSKMAG00000017287	rpusd1	98	59.468	Kryptolebias_marmoratus
ENSBTAG00000000179	RPUSD1	98	59.672	ENSLBEG00000013354	RPUSD1	98	57.862	Labrus_bergylta
ENSBTAG00000000179	RPUSD1	98	59.672	ENSLBEG00000022502	rpusd1	98	57.862	Labrus_bergylta
ENSBTAG00000000179	RPUSD1	99	64.474	ENSLACG00000008869	RPUSD1	99	64.474	Latimeria_chalumnae
ENSBTAG00000000179	RPUSD1	70	75.000	ENSLOCG00000005682	rpusd1	99	75.000	Lepisosteus_oculatus
ENSBTAG00000000179	RPUSD1	100	81.818	ENSLAFG00000002115	RPUSD1	100	81.494	Loxodonta_africana
ENSBTAG00000000179	RPUSD1	100	86.859	ENSMFAG00000003961	RPUSD1	100	86.859	Macaca_fascicularis
ENSBTAG00000000179	RPUSD1	100	86.859	ENSMMUG00000000842	RPUSD1	100	86.859	Macaca_mulatta
ENSBTAG00000000179	RPUSD1	100	86.859	ENSMNEG00000042712	RPUSD1	100	86.859	Macaca_nemestrina
ENSBTAG00000000179	RPUSD1	100	86.859	ENSMLEG00000030591	RPUSD1	100	86.859	Mandrillus_leucophaeus
ENSBTAG00000000179	RPUSD1	98	60.131	ENSMAMG00000004735	rpusd1	98	60.131	Mastacembelus_armatus
ENSBTAG00000000179	RPUSD1	82	68.379	ENSMZEG00005003214	rpusd1	98	60.586	Maylandia_zebra
ENSBTAG00000000179	RPUSD1	97	67.785	ENSMGAG00000005447	RPUSD1	99	67.785	Meleagris_gallopavo
ENSBTAG00000000179	RPUSD1	85	77.068	ENSMAUG00000019998	Rpusd1	100	77.068	Mesocricetus_auratus
ENSBTAG00000000179	RPUSD1	100	83.544	ENSMICG00000017561	RPUSD1	100	83.861	Microcebus_murinus
ENSBTAG00000000179	RPUSD1	100	85.065	ENSMOCG00000014082	Rpusd1	100	83.766	Microtus_ochrogaster
ENSBTAG00000000179	RPUSD1	80	66.939	ENSMMOG00000012569	rpusd1	99	58.278	Mola_mola
ENSBTAG00000000179	RPUSD1	100	69.872	ENSMODG00000016882	RPUSD1	100	69.872	Monodelphis_domestica
ENSBTAG00000000179	RPUSD1	98	59.804	ENSMALG00000017818	rpusd1	98	59.477	Monopterus_albus
ENSBTAG00000000179	RPUSD1	100	85.714	MGP_CAROLIEiJ_G0021244	Rpusd1	100	84.740	Mus_caroli
ENSBTAG00000000179	RPUSD1	100	86.039	ENSMUSG00000041199	Rpusd1	100	85.065	Mus_musculus
ENSBTAG00000000179	RPUSD1	100	83.226	MGP_PahariEiJ_G0023562	Rpusd1	100	83.226	Mus_pahari
ENSBTAG00000000179	RPUSD1	100	86.039	MGP_SPRETEiJ_G0022155	Rpusd1	100	85.065	Mus_spretus
ENSBTAG00000000179	RPUSD1	100	83.117	ENSMPUG00000015897	RPUSD1	100	84.091	Mustela_putorius_furo
ENSBTAG00000000179	RPUSD1	100	86.859	ENSMLUG00000001089	RPUSD1	100	88.141	Myotis_lucifugus
ENSBTAG00000000179	RPUSD1	100	86.039	ENSNGAG00000003595	Rpusd1	100	84.740	Nannospalax_galili
ENSBTAG00000000179	RPUSD1	81	68.145	ENSNBRG00000006457	rpusd1	98	60.133	Neolamprologus_brichardi
ENSBTAG00000000179	RPUSD1	56	80.000	ENSNLEG00000008424	-	100	80.000	Nomascus_leucogenys
ENSBTAG00000000179	RPUSD1	100	70.096	ENSMEUG00000016049	RPUSD1	100	69.481	Notamacropus_eugenii
ENSBTAG00000000179	RPUSD1	99	76.144	ENSOPRG00000008340	RPUSD1	99	76.144	Ochotona_princeps
ENSBTAG00000000179	RPUSD1	100	83.766	ENSODEG00000016945	RPUSD1	100	83.117	Octodon_degus
ENSBTAG00000000179	RPUSD1	82	67.194	ENSONIG00000015672	rpusd1	99	59.609	Oreochromis_niloticus
ENSBTAG00000000179	RPUSD1	99	60.526	ENSORLG00000013009	rpusd1	99	60.526	Oryzias_latipes
ENSBTAG00000000179	RPUSD1	99	60.197	ENSORLG00020010382	rpusd1	99	60.197	Oryzias_latipes_hni
ENSBTAG00000000179	RPUSD1	99	59.539	ENSORLG00015021354	rpusd1	99	59.539	Oryzias_latipes_hsok
ENSBTAG00000000179	RPUSD1	98	60.465	ENSOMEG00000021426	rpusd1	98	60.465	Oryzias_melastigma
ENSBTAG00000000179	RPUSD1	100	88.782	ENSOGAG00000003795	RPUSD1	100	88.141	Otolemur_garnettii
ENSBTAG00000000179	RPUSD1	100	97.727	ENSOARG00000014254	RPUSD1	100	97.727	Ovis_aries
ENSBTAG00000000179	RPUSD1	100	85.256	ENSPPAG00000034797	RPUSD1	100	85.256	Pan_paniscus
ENSBTAG00000000179	RPUSD1	100	85.390	ENSPPRG00000012389	RPUSD1	100	85.065	Panthera_pardus
ENSBTAG00000000179	RPUSD1	100	85.390	ENSPTIG00000008545	RPUSD1	92	84.740	Panthera_tigris_altaica
ENSBTAG00000000179	RPUSD1	100	85.256	ENSPTRG00000007565	RPUSD1	100	85.256	Pan_troglodytes
ENSBTAG00000000179	RPUSD1	100	86.218	ENSPANG00000024401	RPUSD1	100	86.218	Papio_anubis
ENSBTAG00000000179	RPUSD1	99	61.538	ENSPKIG00000018890	rpusd1	91	60.772	Paramormyrops_kingsleyae
ENSBTAG00000000179	RPUSD1	99	67.869	ENSPSIG00000013945	RPUSD1	100	67.869	Pelodiscus_sinensis
ENSBTAG00000000179	RPUSD1	98	58.416	ENSPMGG00000014950	rpusd1	98	58.416	Periophthalmus_magnuspinnatus
ENSBTAG00000000179	RPUSD1	100	84.740	ENSPEMG00000000497	Rpusd1	100	83.442	Peromyscus_maniculatus_bairdii
ENSBTAG00000000179	RPUSD1	98	53.289	ENSPMAG00000001563	rpusd1	84	60.232	Petromyzon_marinus
ENSBTAG00000000179	RPUSD1	100	69.649	ENSPCIG00000021216	-	94	70.130	Phascolarctos_cinereus
ENSBTAG00000000179	RPUSD1	98	60.000	ENSPFOG00000007946	rpusd1	98	60.133	Poecilia_formosa
ENSBTAG00000000179	RPUSD1	98	60.000	ENSPLAG00000011925	rpusd1	98	60.133	Poecilia_latipinna
ENSBTAG00000000179	RPUSD1	98	59.344	ENSPMEG00000002910	rpusd1	98	59.468	Poecilia_mexicana
ENSBTAG00000000179	RPUSD1	98	60.465	ENSPREG00000019851	rpusd1	98	60.465	Poecilia_reticulata
ENSBTAG00000000179	RPUSD1	100	70.130	ENSPCAG00000002258	RPUSD1	100	69.481	Procavia_capensis
ENSBTAG00000000179	RPUSD1	100	86.538	ENSPCOG00000022582	RPUSD1	100	82.866	Propithecus_coquereli
ENSBTAG00000000179	RPUSD1	100	83.974	ENSPVAG00000013104	RPUSD1	100	85.256	Pteropus_vampyrus
ENSBTAG00000000179	RPUSD1	98	60.133	ENSPNYG00000024076	rpusd1	98	60.465	Pundamilia_nyererei
ENSBTAG00000000179	RPUSD1	98	60.265	ENSPNAG00000013806	rpusd1	100	59.344	Pygocentrus_nattereri
ENSBTAG00000000179	RPUSD1	100	85.714	ENSRNOG00000023639	Rpusd1	100	84.740	Rattus_norvegicus
ENSBTAG00000000179	RPUSD1	100	86.218	ENSRBIG00000030238	RPUSD1	100	86.218	Rhinopithecus_bieti
ENSBTAG00000000179	RPUSD1	100	86.218	ENSRROG00000036663	RPUSD1	100	86.218	Rhinopithecus_roxellana
ENSBTAG00000000179	RPUSD1	100	83.766	ENSSBOG00000033063	RPUSD1	100	85.065	Saimiri_boliviensis_boliviensis
ENSBTAG00000000179	RPUSD1	100	68.690	ENSSHAG00000013500	RPUSD1	100	69.156	Sarcophilus_harrisii
ENSBTAG00000000179	RPUSD1	99	64.145	ENSSFOG00015014394	rpusd1	99	64.145	Scleropages_formosus
ENSBTAG00000000179	RPUSD1	98	59.344	ENSSMAG00000008045	rpusd1	91	59.344	Scophthalmus_maximus
ENSBTAG00000000179	RPUSD1	82	68.379	ENSSDUG00000001829	rpusd1	95	60.984	Seriola_dumerili
ENSBTAG00000000179	RPUSD1	82	68.379	ENSSLDG00000020853	rpusd1	95	60.984	Seriola_lalandi_dorsalis
ENSBTAG00000000179	RPUSD1	54	88.024	ENSSARG00000011187	-	100	88.024	Sorex_araneus
ENSBTAG00000000179	RPUSD1	63	55.446	ENSSPUG00000005119	-	100	54.950	Sphenodon_punctatus
ENSBTAG00000000179	RPUSD1	98	60.000	ENSSPAG00000012708	rpusd1	98	60.328	Stegastes_partitus
ENSBTAG00000000179	RPUSD1	100	89.744	ENSSSCG00000008000	RPUSD1	99	93.385	Sus_scrofa
ENSBTAG00000000179	RPUSD1	83	73.725	ENSTGUG00000015375	RPUSD1	100	73.725	Taeniopygia_guttata
ENSBTAG00000000179	RPUSD1	98	59.477	ENSTRUG00000003041	rpusd1	98	59.150	Takifugu_rubripes
ENSBTAG00000000179	RPUSD1	98	56.623	ENSTNIG00000002660	rpusd1	99	56.623	Tetraodon_nigroviridis
ENSBTAG00000000179	RPUSD1	100	92.949	ENSTTRG00000010167	RPUSD1	100	91.987	Tursiops_truncatus
ENSBTAG00000000179	RPUSD1	100	85.714	ENSUAMG00000012736	RPUSD1	100	86.039	Ursus_americanus
ENSBTAG00000000179	RPUSD1	100	85.714	ENSUMAG00000021174	RPUSD1	100	86.039	Ursus_maritimus
ENSBTAG00000000179	RPUSD1	100	85.065	ENSVVUG00000012357	RPUSD1	100	85.065	Vulpes_vulpes
ENSBTAG00000000179	RPUSD1	100	62.662	ENSXETG00000007184	rpusd1	100	62.300	Xenopus_tropicalis
ENSBTAG00000000179	RPUSD1	98	58.804	ENSXCOG00000017930	rpusd1	98	58.804	Xiphophorus_couchianus
ENSBTAG00000000179	RPUSD1	98	59.801	ENSXMAG00000024084	rpusd1	98	59.801	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001522	pseudouridine synthesis	-	IEA	Process
GO:0003723	RNA binding	-	IEA	Function
GO:0009982	pseudouridine synthase activity	-	IEA	Function