EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSBTAG00000000267 (Gene tree)
Gene ID: 516411
Gene Symbol: SMG6
Alias: -
Full Name: Bos taurus SMG6%2C nonsense mediated mRNA decay factor (SMG6)%2C mRNA.
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Minus strand
Length: 200534 bases
Position: chr19:23080158-23280691
Accession: NM_001205827
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000000333	EST1	PF10374.9	3.9e-15	1	1
ENSBTAP00000000333	EST1_DNA_bind	PF10373.9	9e-61	1	1
ENSBTAP00000000333	PIN_4	PF13638.6	2.2e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000000333	-	5811	XM_024980132	ENSBTAP00000000333	1411 (aa)	XP_024835900	E1BFK4

Gene Model

Click here to download ENSBTAG00000000267's gene model file

Pathways

Pathway ID	Pathway Name	Source
bta03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000000267's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000000267	SMG6	100	92.248	ENSG00000070366	SMG6	100	96.869	Homo_sapiens
ENSBTAG00000000267	SMG6	87	54.608	ENSAPOG00000019448	smg6	74	55.442	Acanthochromis_polyacanthus
ENSBTAG00000000267	SMG6	100	94.915	ENSAMEG00000007632	SMG6	100	94.915	Ailuropoda_melanoleuca
ENSBTAG00000000267	SMG6	87	54.587	ENSAPEG00000019101	smg6	75	55.000	Amphiprion_percula
ENSBTAG00000000267	SMG6	85	55.127	ENSATEG00000006483	smg6	73	55.417	Anabas_testudineus
ENSBTAG00000000267	SMG6	87	57.310	ENSACAG00000011783	SMG6	99	58.870	Anolis_carolinensis
ENSBTAG00000000267	SMG6	100	92.741	ENSANAG00000035760	SMG6	100	92.741	Aotus_nancymaae
ENSBTAG00000000267	SMG6	72	59.447	ENSACLG00000005288	smg6	82	54.726	Astatotilapia_calliptera
ENSBTAG00000000267	SMG6	69	63.370	ENSAMXG00000017326	smg6	98	51.049	Astyanax_mexicanus
ENSBTAG00000000267	SMG6	100	92.389	ENSCJAG00000001820	SMG6	100	92.389	Callithrix_jacchus
ENSBTAG00000000267	SMG6	100	94.480	ENSCAFG00000019260	SMG6	100	94.480	Canis_familiaris
ENSBTAG00000000267	SMG6	100	94.480	ENSCAFG00020009770	SMG6	100	94.480	Canis_lupus_dingo
ENSBTAG00000000267	SMG6	100	98.724	ENSCHIG00000021998	SMG6	100	98.724	Capra_hircus
ENSBTAG00000000267	SMG6	100	92.459	ENSTSYG00000003406	SMG6	100	97.065	Carlito_syrichta
ENSBTAG00000000267	SMG6	98	76.568	ENSCAPG00000016197	SMG6	99	82.201	Cavia_aperea
ENSBTAG00000000267	SMG6	100	90.211	ENSCPOG00000014878	SMG6	100	90.211	Cavia_porcellus
ENSBTAG00000000267	SMG6	100	92.882	ENSCCAG00000035801	SMG6	100	92.882	Cebus_capucinus
ENSBTAG00000000267	SMG6	100	92.882	ENSCATG00000031956	SMG6	100	92.882	Cercocebus_atys
ENSBTAG00000000267	SMG6	100	92.107	ENSCLAG00000006748	SMG6	100	92.107	Chinchilla_lanigera
ENSBTAG00000000267	SMG6	100	93.305	ENSCSAG00000013800	SMG6	100	93.305	Chlorocebus_sabaeus
ENSBTAG00000000267	SMG6	51	98.507	ENSCHOG00000005024	-	66	98.507	Choloepus_hoffmanni
ENSBTAG00000000267	SMG6	100	73.106	ENSCPBG00000020369	SMG6	100	73.574	Chrysemys_picta_bellii
ENSBTAG00000000267	SMG6	98	92.852	ENSCANG00000031764	SMG6	100	96.869	Colobus_angolensis_palliatus
ENSBTAG00000000267	SMG6	55	87.852	ENSCGRG00001019595	Smg6	98	87.852	Cricetulus_griseus_chok1gshd
ENSBTAG00000000267	SMG6	98	85.632	ENSCGRG00000007782	Smg6	99	85.776	Cricetulus_griseus_crigri
ENSBTAG00000000267	SMG6	86	52.857	ENSCSEG00000012757	smg6	94	49.004	Cynoglossus_semilaevis
ENSBTAG00000000267	SMG6	72	57.985	ENSCVAG00000012789	smg6	74	54.474	Cyprinodon_variegatus
ENSBTAG00000000267	SMG6	100	50.338	ENSDARG00000100481	smg6	100	51.120	Danio_rerio
ENSBTAG00000000267	SMG6	100	92.530	ENSDNOG00000048283	SMG6	100	92.530	Dasypus_novemcinctus
ENSBTAG00000000267	SMG6	100	88.842	ENSDORG00000016614	Smg6	94	98.198	Dipodomys_ordii
ENSBTAG00000000267	SMG6	93	100.000	ENSETEG00000016790	SMG6	93	100.000	Echinops_telfairi
ENSBTAG00000000267	SMG6	74	49.951	ENSEBUG00000005059	smg6	73	48.828	Eptatretus_burgeri
ENSBTAG00000000267	SMG6	99	94.897	ENSEASG00005009318	SMG6	99	94.897	Equus_asinus_asinus
ENSBTAG00000000267	SMG6	99	94.614	ENSECAG00000006519	SMG6	99	94.614	Equus_caballus
ENSBTAG00000000267	SMG6	100	83.203	ENSEEUG00000003493	SMG6	100	83.203	Erinaceus_europaeus
ENSBTAG00000000267	SMG6	72	60.741	ENSELUG00000005934	smg6	67	56.861	Esox_lucius
ENSBTAG00000000267	SMG6	100	95.329	ENSFCAG00000028817	SMG6	100	95.329	Felis_catus
ENSBTAG00000000267	SMG6	98	72.986	ENSFALG00000006538	SMG6	99	73.058	Ficedula_albicollis
ENSBTAG00000000267	SMG6	100	91.825	ENSFDAG00000015106	SMG6	100	91.825	Fukomys_damarensis
ENSBTAG00000000267	SMG6	83	53.546	ENSFHEG00000013282	smg6	75	54.092	Fundulus_heteroclitus
ENSBTAG00000000267	SMG6	53	69.159	ENSGMOG00000019077	smg6	68	69.159	Gadus_morhua
ENSBTAG00000000267	SMG6	100	72.072	ENSGALG00000003108	SMG6	98	72.234	Gallus_gallus
ENSBTAG00000000267	SMG6	83	54.317	ENSGAFG00000000379	smg6	74	54.510	Gambusia_affinis
ENSBTAG00000000267	SMG6	91	54.210	ENSGACG00000020521	smg6	99	53.955	Gasterosteus_aculeatus
ENSBTAG00000000267	SMG6	98	73.200	ENSGAGG00000025617	SMG6	99	73.557	Gopherus_agassizii
ENSBTAG00000000267	SMG6	100	93.094	ENSGGOG00000017156	SMG6	100	93.094	Gorilla_gorilla
ENSBTAG00000000267	SMG6	86	54.469	ENSHBUG00000021311	smg6	76	54.753	Haplochromis_burtoni
ENSBTAG00000000267	SMG6	100	91.766	ENSHGLG00000012882	SMG6	100	91.766	Heterocephalus_glaber_female
ENSBTAG00000000267	SMG6	100	91.837	ENSHGLG00100017815	SMG6	100	91.837	Heterocephalus_glaber_male
ENSBTAG00000000267	SMG6	77	56.526	ENSHCOG00000008761	smg6	99	53.429	Hippocampus_comes
ENSBTAG00000000267	SMG6	87	54.720	ENSIPUG00000012493	smg6	79	53.609	Ictalurus_punctatus
ENSBTAG00000000267	SMG6	100	93.164	ENSSTOG00000028127	SMG6	100	93.164	Ictidomys_tridecemlineatus
ENSBTAG00000000267	SMG6	79	88.393	ENSJJAG00000015367	Smg6	95	86.470	Jaculus_jaculus
ENSBTAG00000000267	SMG6	78	55.133	ENSKMAG00000000279	smg6	76	53.864	Kryptolebias_marmoratus
ENSBTAG00000000267	SMG6	85	53.544	ENSLBEG00000002184	smg6	75	53.729	Labrus_bergylta
ENSBTAG00000000267	SMG6	55	58.860	ENSLACG00000000806	-	98	59.603	Latimeria_chalumnae
ENSBTAG00000000267	SMG6	72	66.255	ENSLOCG00000006448	smg6	99	55.517	Lepisosteus_oculatus
ENSBTAG00000000267	SMG6	100	92.319	ENSLAFG00000001261	SMG6	100	92.319	Loxodonta_africana
ENSBTAG00000000267	SMG6	100	93.517	ENSMFAG00000003394	SMG6	100	93.517	Macaca_fascicularis
ENSBTAG00000000267	SMG6	100	93.446	ENSMMUG00000023161	SMG6	100	93.446	Macaca_mulatta
ENSBTAG00000000267	SMG6	100	88.616	ENSMNEG00000044592	SMG6	100	88.616	Macaca_nemestrina
ENSBTAG00000000267	SMG6	93	96.992	ENSMLEG00000029353	SMG6	99	96.992	Mandrillus_leucophaeus
ENSBTAG00000000267	SMG6	85	55.504	ENSMAMG00000020119	smg6	97	49.644	Mastacembelus_armatus
ENSBTAG00000000267	SMG6	72	59.631	ENSMZEG00005024736	smg6	76	54.455	Maylandia_zebra
ENSBTAG00000000267	SMG6	73	67.077	ENSMGAG00000005401	-	99	66.887	Meleagris_gallopavo
ENSBTAG00000000267	SMG6	100	94.292	ENSMICG00000012913	SMG6	100	94.292	Microcebus_murinus
ENSBTAG00000000267	SMG6	100	48.485	ENSMMOG00000010883	smg6	100	48.595	Mola_mola
ENSBTAG00000000267	SMG6	100	86.076	ENSMODG00000010622	SMG6	100	86.076	Monodelphis_domestica
ENSBTAG00000000267	SMG6	85	54.314	ENSMALG00000001106	smg6	73	55.280	Monopterus_albus
ENSBTAG00000000267	SMG6	100	91.402	MGP_CAROLIEiJ_G0016729	Smg6	96	95.882	Mus_caroli
ENSBTAG00000000267	SMG6	100	91.261	ENSMUSG00000038290	Smg6	100	91.261	Mus_musculus
ENSBTAG00000000267	SMG6	100	91.044	MGP_PahariEiJ_G0017866	Smg6	100	91.044	Mus_pahari
ENSBTAG00000000267	SMG6	100	91.261	MGP_SPRETEiJ_G0017572	Smg6	100	91.261	Mus_spretus
ENSBTAG00000000267	SMG6	100	94.834	ENSMPUG00000013046	SMG6	100	94.834	Mustela_putorius_furo
ENSBTAG00000000267	SMG6	100	93.984	ENSMLUG00000005739	SMG6	100	93.984	Myotis_lucifugus
ENSBTAG00000000267	SMG6	98	90.607	ENSNGAG00000007287	Smg6	99	90.607	Nannospalax_galili
ENSBTAG00000000267	SMG6	86	53.664	ENSNBRG00000009511	smg6	83	54.033	Neolamprologus_brichardi
ENSBTAG00000000267	SMG6	98	93.213	ENSNLEG00000017171	SMG6	100	97.065	Nomascus_leucogenys
ENSBTAG00000000267	SMG6	98	82.997	ENSMEUG00000015804	SMG6	99	82.997	Notamacropus_eugenii
ENSBTAG00000000267	SMG6	62	91.855	ENSOPRG00000000579	SMG6	85	96.316	Ochotona_princeps
ENSBTAG00000000267	SMG6	100	85.151	ENSODEG00000008038	SMG6	100	85.151	Octodon_degus
ENSBTAG00000000267	SMG6	100	51.263	ENSONIG00000005594	smg6	100	51.731	Oreochromis_niloticus
ENSBTAG00000000267	SMG6	100	92.400	ENSOCUG00000013018	SMG6	100	92.400	Oryctolagus_cuniculus
ENSBTAG00000000267	SMG6	84	54.353	ENSORLG00000003317	smg6	75	54.531	Oryzias_latipes
ENSBTAG00000000267	SMG6	84	54.403	ENSORLG00020015343	smg6	74	54.346	Oryzias_latipes_hni
ENSBTAG00000000267	SMG6	84	54.275	ENSORLG00015020454	smg6	75	54.609	Oryzias_latipes_hsok
ENSBTAG00000000267	SMG6	83	53.470	ENSOMEG00000010838	smg6	75	53.870	Oryzias_melastigma
ENSBTAG00000000267	SMG6	100	93.310	ENSOGAG00000004483	SMG6	100	93.310	Otolemur_garnettii
ENSBTAG00000000267	SMG6	100	97.032	ENSOARG00000015076	SMG6	100	98.696	Ovis_aries
ENSBTAG00000000267	SMG6	100	93.094	ENSPPAG00000043296	SMG6	100	93.094	Pan_paniscus
ENSBTAG00000000267	SMG6	100	95.400	ENSPPRG00000014581	SMG6	100	95.400	Panthera_pardus
ENSBTAG00000000267	SMG6	98	95.445	ENSPTIG00000008925	SMG6	100	98.043	Panthera_tigris_altaica
ENSBTAG00000000267	SMG6	100	93.023	ENSPTRG00000008544	SMG6	100	96.869	Pan_troglodytes
ENSBTAG00000000267	SMG6	100	93.164	ENSPANG00000024588	SMG6	100	93.164	Papio_anubis
ENSBTAG00000000267	SMG6	89	71.317	ENSPSIG00000006660	SMG6	96	71.451	Pelodiscus_sinensis
ENSBTAG00000000267	SMG6	100	50.033	ENSPMGG00000000844	smg6	100	60.614	Periophthalmus_magnuspinnatus
ENSBTAG00000000267	SMG6	100	92.178	ENSPEMG00000020707	Smg6	100	92.178	Peromyscus_maniculatus_bairdii
ENSBTAG00000000267	SMG6	100	51.234	ENSPFOG00000012035	smg6	100	51.477	Poecilia_formosa
ENSBTAG00000000267	SMG6	77	56.641	ENSPLAG00000017660	smg6	74	54.317	Poecilia_latipinna
ENSBTAG00000000267	SMG6	83	53.894	ENSPMEG00000000258	smg6	74	54.753	Poecilia_mexicana
ENSBTAG00000000267	SMG6	83	54.438	ENSPREG00000010066	smg6	74	54.324	Poecilia_reticulata
ENSBTAG00000000267	SMG6	100	87.764	ENSPPYG00000007790	SMG6	100	87.764	Pongo_abelii
ENSBTAG00000000267	SMG6	100	88.513	ENSPCAG00000000552	SMG6	100	88.513	Procavia_capensis
ENSBTAG00000000267	SMG6	100	93.939	ENSPCOG00000020925	SMG6	100	93.939	Propithecus_coquereli
ENSBTAG00000000267	SMG6	86	96.552	ENSPVAG00000002159	SMG6	86	96.552	Pteropus_vampyrus
ENSBTAG00000000267	SMG6	86	55.172	ENSPNYG00000024151	smg6	81	56.436	Pundamilia_nyererei
ENSBTAG00000000267	SMG6	84	53.021	ENSPNAG00000015480	smg6	87	63.016	Pygocentrus_nattereri
ENSBTAG00000000267	SMG6	100	91.614	ENSRNOG00000003041	Smg6	97	96.254	Rattus_norvegicus
ENSBTAG00000000267	SMG6	100	92.741	ENSRBIG00000024746	SMG6	100	92.741	Rhinopithecus_bieti
ENSBTAG00000000267	SMG6	100	92.812	ENSRROG00000030423	SMG6	100	96.477	Rhinopithecus_roxellana
ENSBTAG00000000267	SMG6	100	92.741	ENSSBOG00000022518	SMG6	100	91.050	Saimiri_boliviensis_boliviensis
ENSBTAG00000000267	SMG6	99	85.408	ENSSHAG00000010045	SMG6	98	85.408	Sarcophilus_harrisii
ENSBTAG00000000267	SMG6	72	62.698	ENSSFOG00015005436	smg6	70	57.390	Scleropages_formosus
ENSBTAG00000000267	SMG6	83	55.538	ENSSMAG00000019777	smg6	73	54.922	Scophthalmus_maximus
ENSBTAG00000000267	SMG6	89	52.984	ENSSDUG00000016412	smg6	74	54.836	Seriola_dumerili
ENSBTAG00000000267	SMG6	86	52.108	ENSSLDG00000020747	smg6	83	51.766	Seriola_lalandi_dorsalis
ENSBTAG00000000267	SMG6	99	70.851	ENSSPUG00000007152	SMG6	99	70.871	Sphenodon_punctatus
ENSBTAG00000000267	SMG6	85	53.757	ENSSPAG00000015633	smg6	75	54.405	Stegastes_partitus
ENSBTAG00000000267	SMG6	100	95.397	ENSSSCG00000017826	SMG6	100	95.397	Sus_scrofa
ENSBTAG00000000267	SMG6	100	73.034	ENSTGUG00000005836	SMG6	100	73.174	Taeniopygia_guttata
ENSBTAG00000000267	SMG6	88	53.078	ENSTRUG00000000358	smg6	86	53.480	Takifugu_rubripes
ENSBTAG00000000267	SMG6	100	50.595	ENSTNIG00000016164	smg6	100	50.332	Tetraodon_nigroviridis
ENSBTAG00000000267	SMG6	100	88.513	ENSTBEG00000011424	SMG6	100	88.302	Tupaia_belangeri
ENSBTAG00000000267	SMG6	91	92.879	ENSTTRG00000001175	SMG6	91	92.879	Tursiops_truncatus
ENSBTAG00000000267	SMG6	100	94.986	ENSUAMG00000025152	SMG6	100	94.946	Ursus_americanus
ENSBTAG00000000267	SMG6	98	95.297	ENSUMAG00000009306	SMG6	100	95.297	Ursus_maritimus
ENSBTAG00000000267	SMG6	85	100.000	ENSVPAG00000000225	SMG6	88	100.000	Vicugna_pacos
ENSBTAG00000000267	SMG6	100	94.197	ENSVVUG00000021727	SMG6	100	94.197	Vulpes_vulpes
ENSBTAG00000000267	SMG6	98	59.479	ENSXETG00000023799	SMG6	99	59.267	Xenopus_tropicalis
ENSBTAG00000000267	SMG6	83	55.164	ENSXCOG00000009867	smg6	74	55.236	Xiphophorus_couchianus
ENSBTAG00000000267	SMG6	83	54.702	ENSXMAG00000010321	smg6	74	54.738	Xiphophorus_maculatus