EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSBTAG00000000288 (Gene tree)
Gene ID: 781181
Gene Symbol: UPF2
Alias: -
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Plus strand
Length: 95679 bases
Position: chr13:12300825-12396503
Accession: 36681
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000062840	Upf2	PF04050.14	1.4e-32	1	1
ENSBTAP00000053336	Upf2	PF04050.14	2e-08	1	1
ENSBTAP00000053336	MIF4G	PF02854.19	5e-76	1	3
ENSBTAP00000053336	MIF4G	PF02854.19	5e-76	2	3
ENSBTAP00000053336	MIF4G	PF02854.19	5e-76	3	3
ENSBTAP00000062840	MIF4G	PF02854.19	6.2e-76	1	3
ENSBTAP00000062840	MIF4G	PF02854.19	6.2e-76	2	3
ENSBTAP00000062840	MIF4G	PF02854.19	6.2e-76	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000075557	-	5465	XM_003586747	ENSBTAP00000062840	1271 (aa)	XP_003586795	UPI0000EBD41F
ENSBTAT00000061493	-	4953	-	ENSBTAP00000053336	1215 (aa)	-	F1MQ83

Gene Model

Click here to download ENSBTAG00000000288's gene model file

Pathways

Pathway ID	Pathway Name	Source
bta03013	RNA transport	KEGG
bta03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000000288's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000000288	UPF2	100	97.642	ENSG00000151461	UPF2	100	97.642	Homo_sapiens
ENSBTAG00000000288	UPF2	99	78.778	ENSAPOG00000015837	UPF2	100	78.778	Acanthochromis_polyacanthus
ENSBTAG00000000288	UPF2	100	98.977	ENSAMEG00000004586	UPF2	100	98.977	Ailuropoda_melanoleuca
ENSBTAG00000000288	UPF2	99	83.047	ENSACIG00000018078	UPF2	100	82.812	Amphilophus_citrinellus
ENSBTAG00000000288	UPF2	100	82.917	ENSAOCG00000016766	UPF2	100	83.151	Amphiprion_ocellaris
ENSBTAG00000000288	UPF2	100	82.995	ENSAPEG00000019084	UPF2	100	83.229	Amphiprion_percula
ENSBTAG00000000288	UPF2	100	82.737	ENSATEG00000021677	UPF2	99	82.710	Anabas_testudineus
ENSBTAG00000000288	UPF2	100	97.802	ENSAPLG00000010287	UPF2	90	91.486	Anas_platyrhynchos
ENSBTAG00000000288	UPF2	100	98.901	ENSACAG00000009259	UPF2	100	92.683	Anolis_carolinensis
ENSBTAG00000000288	UPF2	99	87.657	ENSANAG00000028451	UPF2	99	86.478	Aotus_nancymaae
ENSBTAG00000000288	UPF2	100	81.357	ENSACLG00000012696	UPF2	100	83.073	Astatotilapia_calliptera
ENSBTAG00000000288	UPF2	99	83.177	ENSAMXG00000013700	UPF2	99	83.568	Astyanax_mexicanus
ENSBTAG00000000288	UPF2	100	97.563	ENSCJAG00000020685	UPF2	100	97.563	Callithrix_jacchus
ENSBTAG00000000288	UPF2	100	99.135	ENSCAFG00000004839	UPF2	100	99.135	Canis_familiaris
ENSBTAG00000000288	UPF2	99	96.690	ENSCAFG00020005882	UPF2	98	98.714	Canis_lupus_dingo
ENSBTAG00000000288	UPF2	100	99.921	ENSCHIG00000020359	UPF2	100	99.921	Capra_hircus
ENSBTAG00000000288	UPF2	100	97.718	ENSTSYG00000000935	UPF2	100	97.718	Carlito_syrichta
ENSBTAG00000000288	UPF2	91	87.411	ENSCAPG00000016658	UPF2	95	86.968	Cavia_aperea
ENSBTAG00000000288	UPF2	99	95.876	ENSCPOG00000008809	UPF2	99	95.876	Cavia_porcellus
ENSBTAG00000000288	UPF2	100	91.267	ENSCCAG00000035991	UPF2	100	91.588	Cebus_capucinus
ENSBTAG00000000288	UPF2	100	97.799	ENSCATG00000032679	UPF2	100	97.799	Cercocebus_atys
ENSBTAG00000000288	UPF2	100	97.640	ENSCLAG00000011434	UPF2	100	97.640	Chinchilla_lanigera
ENSBTAG00000000288	UPF2	100	97.877	ENSCSAG00000013372	UPF2	100	97.877	Chlorocebus_sabaeus
ENSBTAG00000000288	UPF2	87	98.884	ENSCHOG00000000422	UPF2	89	98.884	Choloepus_hoffmanni
ENSBTAG00000000288	UPF2	99	100.000	ENSCPBG00000027823	UPF2	100	93.381	Chrysemys_picta_bellii
ENSBTAG00000000288	UPF2	79	48.963	ENSCSAVG00000007772	-	79	50.446	Ciona_savignyi
ENSBTAG00000000288	UPF2	99	91.406	ENSCANG00000040396	UPF2	100	92.054	Colobus_angolensis_palliatus
ENSBTAG00000000288	UPF2	100	97.876	ENSCGRG00001019347	Upf2	100	97.876	Cricetulus_griseus_chok1gshd
ENSBTAG00000000288	UPF2	100	97.876	ENSCGRG00000017993	Upf2	100	97.876	Cricetulus_griseus_crigri
ENSBTAG00000000288	UPF2	99	78.728	ENSCSEG00000003520	UPF2	99	77.183	Cynoglossus_semilaevis
ENSBTAG00000000288	UPF2	99	83.111	ENSCVAG00000006167	UPF2	100	82.639	Cyprinodon_variegatus
ENSBTAG00000000288	UPF2	100	98.505	ENSDNOG00000018160	UPF2	100	98.505	Dasypus_novemcinctus
ENSBTAG00000000288	UPF2	100	97.876	ENSDORG00000002478	Upf2	100	97.876	Dipodomys_ordii
ENSBTAG00000000288	UPF2	84	43.011	FBgn0029992	Upf2	80	43.011	Drosophila_melanogaster
ENSBTAG00000000288	UPF2	72	100.000	ENSETEG00000011583	-	66	100.000	Echinops_telfairi
ENSBTAG00000000288	UPF2	62	84.270	ENSEBUG00000012448	-	81	84.270	Eptatretus_burgeri
ENSBTAG00000000288	UPF2	100	98.662	ENSEASG00005019274	UPF2	100	98.765	Equus_asinus_asinus
ENSBTAG00000000288	UPF2	100	98.741	ENSECAG00000017022	UPF2	100	98.741	Equus_caballus
ENSBTAG00000000288	UPF2	81	100.000	ENSEEUG00000007819	UPF2	82	95.208	Erinaceus_europaeus
ENSBTAG00000000288	UPF2	99	81.861	ENSELUG00000012014	UPF2	100	82.271	Esox_lucius
ENSBTAG00000000288	UPF2	100	98.977	ENSFCAG00000005785	UPF2	100	98.977	Felis_catus
ENSBTAG00000000288	UPF2	100	94.020	ENSFALG00000001889	UPF2	98	94.020	Ficedula_albicollis
ENSBTAG00000000288	UPF2	100	97.482	ENSFDAG00000014348	UPF2	100	97.482	Fukomys_damarensis
ENSBTAG00000000288	UPF2	99	83.425	ENSFHEG00000009826	UPF2	99	83.083	Fundulus_heteroclitus
ENSBTAG00000000288	UPF2	91	83.851	ENSGMOG00000005557	UPF2	91	83.563	Gadus_morhua
ENSBTAG00000000288	UPF2	100	100.000	ENSGALG00000033772	UPF2	100	94.104	Gallus_gallus
ENSBTAG00000000288	UPF2	100	79.797	ENSGAFG00000020867	UPF2	100	81.903	Gambusia_affinis
ENSBTAG00000000288	UPF2	90	84.297	ENSGACG00000001080	UPF2	100	82.344	Gasterosteus_aculeatus
ENSBTAG00000000288	UPF2	100	100.000	ENSGAGG00000002700	UPF2	100	93.784	Gopherus_agassizii
ENSBTAG00000000288	UPF2	100	97.642	ENSGGOG00000001479	UPF2	100	97.642	Gorilla_gorilla
ENSBTAG00000000288	UPF2	100	81.201	ENSHBUG00000004249	UPF2	100	83.047	Haplochromis_burtoni
ENSBTAG00000000288	UPF2	99	86.614	ENSHGLG00000003822	-	99	85.354	Heterocephalus_glaber_female
ENSBTAG00000000288	UPF2	100	97.640	ENSHGLG00000015176	-	100	97.640	Heterocephalus_glaber_female
ENSBTAG00000000288	UPF2	99	94.405	ENSHGLG00100010036	UPF2	100	94.090	Heterocephalus_glaber_male
ENSBTAG00000000288	UPF2	100	80.886	ENSHCOG00000004025	UPF2	99	80.886	Hippocampus_comes
ENSBTAG00000000288	UPF2	100	81.825	ENSIPUG00000015524	UPF2	100	82.201	Ictalurus_punctatus
ENSBTAG00000000288	UPF2	100	98.426	ENSSTOG00000013075	UPF2	100	98.426	Ictidomys_tridecemlineatus
ENSBTAG00000000288	UPF2	100	96.932	ENSJJAG00000004913	Upf2	100	96.932	Jaculus_jaculus
ENSBTAG00000000288	UPF2	92	84.766	ENSKMAG00000001071	UPF2	92	84.569	Kryptolebias_marmoratus
ENSBTAG00000000288	UPF2	99	81.250	ENSLBEG00000016394	-	99	83.191	Labrus_bergylta
ENSBTAG00000000288	UPF2	83	82.711	ENSLBEG00000000728	-	93	82.809	Labrus_bergylta
ENSBTAG00000000288	UPF2	99	80.016	ENSLACG00000015945	UPF2	100	79.937	Latimeria_chalumnae
ENSBTAG00000000288	UPF2	99	86.682	ENSLOCG00000015698	UPF2	100	86.604	Lepisosteus_oculatus
ENSBTAG00000000288	UPF2	100	97.720	ENSMFAG00000043865	UPF2	100	97.720	Macaca_fascicularis
ENSBTAG00000000288	UPF2	100	97.720	ENSMMUG00000008241	UPF2	100	97.720	Macaca_mulatta
ENSBTAG00000000288	UPF2	84	96.976	ENSMNEG00000008062	UPF2	100	96.976	Macaca_nemestrina
ENSBTAG00000000288	UPF2	95	99.275	ENSMLEG00000036120	UPF2	100	99.275	Mandrillus_leucophaeus
ENSBTAG00000000288	UPF2	100	82.426	ENSMAMG00000018276	UPF2	100	82.710	Mastacembelus_armatus
ENSBTAG00000000288	UPF2	100	81.357	ENSMZEG00005021595	UPF2	100	83.073	Maylandia_zebra
ENSBTAG00000000288	UPF2	99	98.889	ENSMGAG00000004573	UPF2	99	93.234	Meleagris_gallopavo
ENSBTAG00000000288	UPF2	100	95.515	ENSMAUG00000016512	Upf2	100	95.515	Mesocricetus_auratus
ENSBTAG00000000288	UPF2	95	98.980	ENSMICG00000001716	UPF2	99	98.964	Microcebus_murinus
ENSBTAG00000000288	UPF2	100	96.932	ENSMOCG00000008263	Upf2	100	96.932	Microtus_ochrogaster
ENSBTAG00000000288	UPF2	90	83.116	ENSMMOG00000006528	UPF2	100	79.281	Mola_mola
ENSBTAG00000000288	UPF2	100	100.000	ENSMODG00000016794	UPF2	100	96.302	Monodelphis_domestica
ENSBTAG00000000288	UPF2	99	82.721	ENSMALG00000002663	UPF2	100	82.694	Monopterus_albus
ENSBTAG00000000288	UPF2	100	97.325	MGP_CAROLIEiJ_G0023157	Upf2	100	98.286	Mus_caroli
ENSBTAG00000000288	UPF2	100	97.325	ENSMUSG00000043241	Upf2	100	97.325	Mus_musculus
ENSBTAG00000000288	UPF2	100	96.932	MGP_PahariEiJ_G0019217	Upf2	100	97.333	Mus_pahari
ENSBTAG00000000288	UPF2	100	97.561	MGP_SPRETEiJ_G0024075	Upf2	100	97.714	Mus_spretus
ENSBTAG00000000288	UPF2	100	98.820	ENSMPUG00000001064	UPF2	100	98.820	Mustela_putorius_furo
ENSBTAG00000000288	UPF2	99	97.958	ENSMLUG00000000228	UPF2	100	97.958	Myotis_lucifugus
ENSBTAG00000000288	UPF2	100	81.357	ENSNBRG00000013629	UPF2	100	83.073	Neolamprologus_brichardi
ENSBTAG00000000288	UPF2	100	97.642	ENSNLEG00000012058	UPF2	100	97.642	Nomascus_leucogenys
ENSBTAG00000000288	UPF2	56	97.409	ENSMEUG00000002180	-	54	97.409	Notamacropus_eugenii
ENSBTAG00000000288	UPF2	76	100.000	ENSOPRG00000006801	-	77	100.000	Ochotona_princeps
ENSBTAG00000000288	UPF2	100	97.325	ENSODEG00000001290	UPF2	100	97.325	Octodon_degus
ENSBTAG00000000288	UPF2	100	81.435	ENSONIG00000017991	UPF2	100	83.151	Oreochromis_niloticus
ENSBTAG00000000288	UPF2	99	97.335	ENSOCUG00000006230	UPF2	100	97.335	Oryctolagus_cuniculus
ENSBTAG00000000288	UPF2	100	81.245	ENSORLG00000017189	UPF2	100	82.293	Oryzias_latipes
ENSBTAG00000000288	UPF2	100	81.245	ENSORLG00020005969	UPF2	100	82.293	Oryzias_latipes_hni
ENSBTAG00000000288	UPF2	100	81.245	ENSORLG00015005713	UPF2	100	82.293	Oryzias_latipes_hsok
ENSBTAG00000000288	UPF2	99	77.925	ENSOMEG00000023420	UPF2	98	79.281	Oryzias_melastigma
ENSBTAG00000000288	UPF2	100	97.718	ENSOGAG00000005796	UPF2	100	97.718	Otolemur_garnettii
ENSBTAG00000000288	UPF2	100	99.764	ENSOARG00000014587	UPF2	100	99.764	Ovis_aries
ENSBTAG00000000288	UPF2	99	93.667	ENSPPAG00000037953	UPF2	100	94.409	Pan_paniscus
ENSBTAG00000000288	UPF2	100	98.977	ENSPPRG00000000690	UPF2	100	98.977	Panthera_pardus
ENSBTAG00000000288	UPF2	100	98.977	ENSPTIG00000008867	UPF2	100	98.977	Panthera_tigris_altaica
ENSBTAG00000000288	UPF2	100	97.642	ENSPTRG00000002291	UPF2	100	97.642	Pan_troglodytes
ENSBTAG00000000288	UPF2	100	97.799	ENSPANG00000023399	UPF2	100	97.799	Papio_anubis
ENSBTAG00000000288	UPF2	100	80.343	ENSPKIG00000025502	UPF2	100	81.045	Paramormyrops_kingsleyae
ENSBTAG00000000288	UPF2	62	92.961	ENSPSIG00000015158	UPF2	95	92.961	Pelodiscus_sinensis
ENSBTAG00000000288	UPF2	99	80.361	ENSPMGG00000005259	UPF2	100	81.304	Periophthalmus_magnuspinnatus
ENSBTAG00000000288	UPF2	93	95.627	ENSPEMG00000015731	Upf2	99	95.627	Peromyscus_maniculatus_bairdii
ENSBTAG00000000288	UPF2	100	95.909	ENSPCIG00000006656	UPF2	100	95.909	Phascolarctos_cinereus
ENSBTAG00000000288	UPF2	100	80.187	ENSPFOG00000017118	UPF2	100	82.215	Poecilia_formosa
ENSBTAG00000000288	UPF2	100	80.187	ENSPLAG00000005094	UPF2	100	82.215	Poecilia_latipinna
ENSBTAG00000000288	UPF2	100	80.187	ENSPMEG00000017009	UPF2	100	82.215	Poecilia_mexicana
ENSBTAG00000000288	UPF2	99	79.796	ENSPREG00000021880	UPF2	100	82.302	Poecilia_reticulata
ENSBTAG00000000288	UPF2	66	99.043	ENSPPYG00000002089	-	100	99.043	Pongo_abelii
ENSBTAG00000000288	UPF2	100	84.579	ENSPCAG00000000684	UPF2	100	84.579	Procavia_capensis
ENSBTAG00000000288	UPF2	99	94.957	ENSPCOG00000021656	UPF2	100	95.035	Propithecus_coquereli
ENSBTAG00000000288	UPF2	100	91.038	ENSPVAG00000017286	UPF2	100	91.038	Pteropus_vampyrus
ENSBTAG00000000288	UPF2	99	78.906	ENSPNYG00000017096	UPF2	100	80.781	Pundamilia_nyererei
ENSBTAG00000000288	UPF2	100	83.463	ENSPNAG00000009357	UPF2	100	84.009	Pygocentrus_nattereri
ENSBTAG00000000288	UPF2	99	91.444	ENSRNOG00000023593	Upf2	100	100.000	Rattus_norvegicus
ENSBTAG00000000288	UPF2	99	96.690	ENSRBIG00000037780	UPF2	100	96.690	Rhinopithecus_bieti
ENSBTAG00000000288	UPF2	100	97.642	ENSRROG00000043547	UPF2	100	97.642	Rhinopithecus_roxellana
ENSBTAG00000000288	UPF2	100	97.406	ENSSBOG00000020012	UPF2	100	97.406	Saimiri_boliviensis_boliviensis
ENSBTAG00000000288	UPF2	100	81.684	ENSSFOG00015023788	upf2	100	83.242	Scleropages_formosus
ENSBTAG00000000288	UPF2	90	83.001	ENSSMAG00000007637	UPF2	100	79.286	Scophthalmus_maximus
ENSBTAG00000000288	UPF2	100	82.995	ENSSDUG00000017244	UPF2	99	83.151	Seriola_dumerili
ENSBTAG00000000288	UPF2	99	81.284	ENSSLDG00000016866	UPF2	100	81.519	Seriola_lalandi_dorsalis
ENSBTAG00000000288	UPF2	100	96.145	ENSSARG00000008615	UPF2	100	96.145	Sorex_araneus
ENSBTAG00000000288	UPF2	99	100.000	ENSSPUG00000014544	UPF2	99	90.787	Sphenodon_punctatus
ENSBTAG00000000288	UPF2	68	98.734	ENSSSCG00000011117	-	100	98.770	Sus_scrofa
ENSBTAG00000000288	UPF2	99	100.000	ENSTGUG00000002163	-	100	94.006	Taeniopygia_guttata
ENSBTAG00000000288	UPF2	100	82.243	ENSTRUG00000007519	UPF2	99	82.215	Takifugu_rubripes
ENSBTAG00000000288	UPF2	100	79.860	ENSTNIG00000004453	UPF2	100	79.439	Tetraodon_nigroviridis
ENSBTAG00000000288	UPF2	93	90.347	ENSTBEG00000012679	UPF2	93	90.686	Tupaia_belangeri
ENSBTAG00000000288	UPF2	100	99.056	ENSTTRG00000016388	UPF2	100	99.056	Tursiops_truncatus
ENSBTAG00000000288	UPF2	94	99.306	ENSUAMG00000023560	UPF2	100	99.054	Ursus_americanus
ENSBTAG00000000288	UPF2	100	99.135	ENSUMAG00000012953	UPF2	95	99.135	Ursus_maritimus
ENSBTAG00000000288	UPF2	89	96.774	ENSVPAG00000006763	UPF2	85	96.774	Vicugna_pacos
ENSBTAG00000000288	UPF2	100	99.056	ENSVVUG00000006166	UPF2	100	99.056	Vulpes_vulpes
ENSBTAG00000000288	UPF2	100	82.782	ENSXETG00000033103	UPF2	100	81.193	Xenopus_tropicalis
ENSBTAG00000000288	UPF2	99	79.485	ENSXCOG00000011604	UPF2	100	81.875	Xiphophorus_couchianus
ENSBTAG00000000288	UPF2	100	79.875	ENSXMAG00000017209	UPF2	100	81.903	Xiphophorus_maculatus