EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSBTAG00000000365 (Gene tree)
Gene ID: 507579
Gene Symbol: TDP2
Alias: -
Full Name: Bos taurus tyrosyl-DNA phosphodiesterase 2 (TDP2)%2C mRNA.
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Plus strand
Length: 12128 bases
Position: chr23:33082758-33094885
Accession: NM_001105341
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000000472	Exo_endo_phos	PF03372.23	1.3e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000000472	-	2663	-	ENSBTAP00000000472	364 (aa)	XP_024839246	A7YWI9

Gene Model

Click here to download ENSBTAG00000000365's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000000365's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000000365	TDP2	94	85.714	ENSG00000111802	TDP2	94	85.714	Homo_sapiens
ENSBTAG00000000365	TDP2	68	53.571	ENSAPOG00000018379	-	89	53.150	Acanthochromis_polyacanthus
ENSBTAG00000000365	TDP2	77	88.214	ENSAMEG00000010230	TDP2	99	88.214	Ailuropoda_melanoleuca
ENSBTAG00000000365	TDP2	70	53.125	ENSAPEG00000004208	-	91	53.125	Amphiprion_percula
ENSBTAG00000000365	TDP2	73	48.699	ENSATEG00000010663	-	87	48.699	Anabas_testudineus
ENSBTAG00000000365	TDP2	93	65.487	ENSACAG00000002332	TDP2	92	65.588	Anolis_carolinensis
ENSBTAG00000000365	TDP2	95	84.058	ENSANAG00000020033	TDP2	94	84.257	Aotus_nancymaae
ENSBTAG00000000365	TDP2	67	56.680	ENSACLG00000016148	tdp2b	95	54.044	Astatotilapia_calliptera
ENSBTAG00000000365	TDP2	80	46.102	ENSACLG00000016132	tdp2b	99	46.102	Astatotilapia_calliptera
ENSBTAG00000000365	TDP2	80	46.102	ENSACLG00000016174	tdp2b	99	46.102	Astatotilapia_calliptera
ENSBTAG00000000365	TDP2	95	51.979	ENSAMXG00000011775	tdp2b	96	52.291	Astyanax_mexicanus
ENSBTAG00000000365	TDP2	76	47.703	ENSAMXG00000036549	tdp2a	92	47.703	Astyanax_mexicanus
ENSBTAG00000000365	TDP2	91	33.036	WBGene00013405	tdpt-1	86	33.036	Caenorhabditis_elegans
ENSBTAG00000000365	TDP2	100	81.868	ENSCJAG00000006074	TDP2	94	83.673	Callithrix_jacchus
ENSBTAG00000000365	TDP2	100	80.769	ENSCJAG00000021963	-	94	82.507	Callithrix_jacchus
ENSBTAG00000000365	TDP2	100	80.495	ENSCAFG00000010428	TDP2	96	88.214	Canis_familiaris
ENSBTAG00000000365	TDP2	77	88.214	ENSCAFG00020009994	TDP2	96	88.214	Canis_lupus_dingo
ENSBTAG00000000365	TDP2	77	96.786	ENSCHIG00000015294	-	95	96.786	Capra_hircus
ENSBTAG00000000365	TDP2	85	84.244	ENSTSYG00000037199	TDP2	100	84.244	Carlito_syrichta
ENSBTAG00000000365	TDP2	94	84.503	ENSCPOG00000006390	TDP2	100	81.593	Cavia_porcellus
ENSBTAG00000000365	TDP2	100	83.242	ENSCCAG00000022734	TDP2	94	84.840	Cebus_capucinus
ENSBTAG00000000365	TDP2	94	86.006	ENSCATG00000022076	TDP2	91	87.143	Cercocebus_atys
ENSBTAG00000000365	TDP2	96	83.381	ENSCLAG00000002072	TDP2	95	83.965	Chinchilla_lanigera
ENSBTAG00000000365	TDP2	96	85.960	ENSCSAG00000007769	TDP2	95	86.006	Chlorocebus_sabaeus
ENSBTAG00000000365	TDP2	95	67.826	ENSCPBG00000006551	TDP2	87	67.930	Chrysemys_picta_bellii
ENSBTAG00000000365	TDP2	94	85.714	ENSCANG00000040122	TDP2	95	85.714	Colobus_angolensis_palliatus
ENSBTAG00000000365	TDP2	94	68.513	ENSCGRG00001000384	Tdp2	92	68.513	Cricetulus_griseus_chok1gshd
ENSBTAG00000000365	TDP2	95	67.151	ENSCGRG00000010250	Tdp2	94	67.638	Cricetulus_griseus_crigri
ENSBTAG00000000365	TDP2	93	53.409	ENSCVAG00000003114	tdp2b	95	53.409	Cyprinodon_variegatus
ENSBTAG00000000365	TDP2	71	47.692	ENSDARG00000069941	tdp2a	58	47.692	Danio_rerio
ENSBTAG00000000365	TDP2	93	51.381	ENSDARG00000035954	tdp2b	95	51.381	Danio_rerio
ENSBTAG00000000365	TDP2	100	81.044	ENSDNOG00000044082	TDP2	99	81.044	Dasypus_novemcinctus
ENSBTAG00000000365	TDP2	77	83.929	ENSETEG00000019096	TDP2	100	83.929	Echinops_telfairi
ENSBTAG00000000365	TDP2	70	53.725	ENSEBUG00000006535	tdp2a	59	53.725	Eptatretus_burgeri
ENSBTAG00000000365	TDP2	100	87.363	ENSEASG00005007656	TDP2	100	87.363	Equus_asinus_asinus
ENSBTAG00000000365	TDP2	100	87.088	ENSECAG00000014264	TDP2	100	87.088	Equus_caballus
ENSBTAG00000000365	TDP2	100	80.769	ENSEEUG00000010776	TDP2	94	81.341	Erinaceus_europaeus
ENSBTAG00000000365	TDP2	92	53.315	ENSELUG00000016449	tdp2b	95	53.315	Esox_lucius
ENSBTAG00000000365	TDP2	82	45.215	ENSELUG00000009321	tdp2a	85	47.985	Esox_lucius
ENSBTAG00000000365	TDP2	100	85.989	ENSFCAG00000025612	TDP2	100	85.989	Felis_catus
ENSBTAG00000000365	TDP2	94	59.475	ENSFALG00000004710	TDP2	94	59.593	Ficedula_albicollis
ENSBTAG00000000365	TDP2	77	84.397	ENSFDAG00000006512	TDP2	97	84.397	Fukomys_damarensis
ENSBTAG00000000365	TDP2	67	50.403	ENSFHEG00000013560	-	84	50.403	Fundulus_heteroclitus
ENSBTAG00000000365	TDP2	94	65.306	ENSGALG00000013637	TDP2	92	65.116	Gallus_gallus
ENSBTAG00000000365	TDP2	97	66.572	ENSGAGG00000002853	TDP2	87	67.347	Gopherus_agassizii
ENSBTAG00000000365	TDP2	94	85.423	ENSGGOG00000014237	TDP2	94	85.423	Gorilla_gorilla
ENSBTAG00000000365	TDP2	52	59.686	ENSHBUG00000005421	-	79	59.686	Haplochromis_burtoni
ENSBTAG00000000365	TDP2	93	54.958	ENSHBUG00000002714	tdp2b	95	54.958	Haplochromis_burtoni
ENSBTAG00000000365	TDP2	100	81.044	ENSHGLG00000008655	TDP2	95	82.507	Heterocephalus_glaber_female
ENSBTAG00000000365	TDP2	100	81.044	ENSHGLG00100019087	TDP2	95	82.507	Heterocephalus_glaber_male
ENSBTAG00000000365	TDP2	97	52.128	ENSIPUG00000013691	tdp2b	94	53.056	Ictalurus_punctatus
ENSBTAG00000000365	TDP2	98	63.585	ENSJJAG00000021685	Tdp2	97	65.294	Jaculus_jaculus
ENSBTAG00000000365	TDP2	76	48.387	ENSKMAG00000015485	-	88	48.387	Kryptolebias_marmoratus
ENSBTAG00000000365	TDP2	94	59.259	ENSLACG00000008852	TDP2	95	59.259	Latimeria_chalumnae
ENSBTAG00000000365	TDP2	77	59.140	ENSLOCG00000005817	tdp2b	99	59.140	Lepisosteus_oculatus
ENSBTAG00000000365	TDP2	94	83.965	ENSLAFG00000002567	TDP2	97	83.965	Loxodonta_africana
ENSBTAG00000000365	TDP2	94	86.297	ENSMFAG00000045296	TDP2	95	86.297	Macaca_fascicularis
ENSBTAG00000000365	TDP2	94	86.297	ENSMMUG00000009803	TDP2	95	86.297	Macaca_mulatta
ENSBTAG00000000365	TDP2	94	86.297	ENSMNEG00000038003	TDP2	95	86.297	Macaca_nemestrina
ENSBTAG00000000365	TDP2	94	85.714	ENSMLEG00000028883	TDP2	95	85.714	Mandrillus_leucophaeus
ENSBTAG00000000365	TDP2	92	52.722	ENSMAMG00000013654	tdp2b	94	52.422	Mastacembelus_armatus
ENSBTAG00000000365	TDP2	76	51.613	ENSMZEG00005004153	tdp2b	98	51.613	Maylandia_zebra
ENSBTAG00000000365	TDP2	80	46.102	ENSMZEG00005004126	tdp2b	99	46.102	Maylandia_zebra
ENSBTAG00000000365	TDP2	93	54.391	ENSMZEG00005003950	tdp2b	95	54.391	Maylandia_zebra
ENSBTAG00000000365	TDP2	73	43.820	ENSMZEG00005003980	-	86	43.820	Maylandia_zebra
ENSBTAG00000000365	TDP2	72	46.792	ENSMZEG00005004103	tdp2b	88	46.792	Maylandia_zebra
ENSBTAG00000000365	TDP2	70	50.391	ENSMZEG00005004055	tdp2b	84	50.391	Maylandia_zebra
ENSBTAG00000000365	TDP2	77	52.113	ENSMZEG00005004077	tdp2b	96	52.113	Maylandia_zebra
ENSBTAG00000000365	TDP2	94	65.889	ENSMGAG00000008014	TDP2	91	65.889	Meleagris_gallopavo
ENSBTAG00000000365	TDP2	94	68.222	ENSMAUG00000014451	Tdp2	92	68.222	Mesocricetus_auratus
ENSBTAG00000000365	TDP2	100	84.384	ENSMICG00000000039	TDP2	95	87.544	Microcebus_murinus
ENSBTAG00000000365	TDP2	94	68.805	ENSMOCG00000002823	Tdp2	92	68.805	Microtus_ochrogaster
ENSBTAG00000000365	TDP2	88	65.046	ENSMODG00000011653	TDP2	95	67.093	Monodelphis_domestica
ENSBTAG00000000365	TDP2	68	50.400	ENSMALG00000005368	-	84	50.400	Monopterus_albus
ENSBTAG00000000365	TDP2	95	67.341	MGP_CAROLIEiJ_G0018354	Tdp2	96	65.556	Mus_caroli
ENSBTAG00000000365	TDP2	94	67.930	ENSMUSG00000035958	Tdp2	91	67.930	Mus_musculus
ENSBTAG00000000365	TDP2	96	66.857	MGP_PahariEiJ_G0019417	Tdp2	91	67.442	Mus_pahari
ENSBTAG00000000365	TDP2	98	67.135	MGP_SPRETEiJ_G0019220	Tdp2	91	68.222	Mus_spretus
ENSBTAG00000000365	TDP2	94	83.768	ENSMPUG00000004516	TDP2	100	81.421	Mustela_putorius_furo
ENSBTAG00000000365	TDP2	97	76.620	ENSMLUG00000013506	TDP2	94	77.485	Myotis_lucifugus
ENSBTAG00000000365	TDP2	99	61.456	ENSNGAG00000001375	Tdp2	92	63.743	Nannospalax_galili
ENSBTAG00000000365	TDP2	97	85.552	ENSNLEG00000002447	TDP2	100	84.890	Nomascus_leucogenys
ENSBTAG00000000365	TDP2	96	83.191	ENSOPRG00000016299	TDP2	97	83.626	Ochotona_princeps
ENSBTAG00000000365	TDP2	77	85.106	ENSODEG00000014018	TDP2	95	85.106	Octodon_degus
ENSBTAG00000000365	TDP2	98	83.708	ENSOCUG00000013773	TDP2	94	84.548	Oryctolagus_cuniculus
ENSBTAG00000000365	TDP2	72	46.970	ENSORLG00000001661	-	96	46.970	Oryzias_latipes
ENSBTAG00000000365	TDP2	72	46.970	ENSORLG00020004634	-	96	46.970	Oryzias_latipes_hni
ENSBTAG00000000365	TDP2	74	41.328	ENSORLG00015008190	-	98	41.328	Oryzias_latipes_hsok
ENSBTAG00000000365	TDP2	82	45.667	ENSOMEG00000015899	-	96	45.667	Oryzias_melastigma
ENSBTAG00000000365	TDP2	100	81.868	ENSOGAG00000025303	TDP2	99	81.868	Otolemur_garnettii
ENSBTAG00000000365	TDP2	94	86.006	ENSPPAG00000029023	TDP2	94	86.006	Pan_paniscus
ENSBTAG00000000365	TDP2	100	85.989	ENSPPRG00000015398	TDP2	100	85.989	Panthera_pardus
ENSBTAG00000000365	TDP2	78	88.693	ENSPTIG00000018574	TDP2	96	88.693	Panthera_tigris_altaica
ENSBTAG00000000365	TDP2	94	86.006	ENSPTRG00000017778	TDP2	94	86.006	Pan_troglodytes
ENSBTAG00000000365	TDP2	94	85.423	ENSPANG00000017590	TDP2	95	85.423	Papio_anubis
ENSBTAG00000000365	TDP2	99	52.561	ENSPKIG00000006483	tdp2b	94	54.179	Paramormyrops_kingsleyae
ENSBTAG00000000365	TDP2	75	71.429	ENSPSIG00000004948	TDP2	94	71.429	Pelodiscus_sinensis
ENSBTAG00000000365	TDP2	94	69.388	ENSPEMG00000001788	Tdp2	91	69.388	Peromyscus_maniculatus_bairdii
ENSBTAG00000000365	TDP2	70	46.840	ENSPMAG00000001570	tdp2b	98	46.840	Petromyzon_marinus
ENSBTAG00000000365	TDP2	94	67.930	ENSPCIG00000007316	TDP2	89	67.930	Phascolarctos_cinereus
ENSBTAG00000000365	TDP2	68	48.400	ENSPFOG00000017990	-	90	48.400	Poecilia_formosa
ENSBTAG00000000365	TDP2	68	48.000	ENSPLAG00000019439	-	79	48.000	Poecilia_latipinna
ENSBTAG00000000365	TDP2	68	48.800	ENSPMEG00000010824	-	84	48.800	Poecilia_mexicana
ENSBTAG00000000365	TDP2	94	85.714	ENSPPYG00000016282	TDP2	87	85.714	Pongo_abelii
ENSBTAG00000000365	TDP2	94	87.135	ENSPCOG00000021415	TDP2	98	87.500	Propithecus_coquereli
ENSBTAG00000000365	TDP2	93	53.824	ENSPNYG00000011532	tdp2b	95	53.824	Pundamilia_nyererei
ENSBTAG00000000365	TDP2	50	47.253	ENSPNYG00000001944	-	69	49.701	Pundamilia_nyererei
ENSBTAG00000000365	TDP2	74	48.958	ENSPNYG00000011504	tdp2b	93	48.958	Pundamilia_nyererei
ENSBTAG00000000365	TDP2	75	48.070	ENSPNAG00000022162	tdp2a	77	46.230	Pygocentrus_nattereri
ENSBTAG00000000365	TDP2	95	67.151	ENSRNOG00000018246	Tdp2	92	67.347	Rattus_norvegicus
ENSBTAG00000000365	TDP2	94	85.423	ENSRBIG00000037119	TDP2	95	85.423	Rhinopithecus_bieti
ENSBTAG00000000365	TDP2	94	85.423	ENSRROG00000005025	TDP2	94	84.321	Rhinopithecus_roxellana
ENSBTAG00000000365	TDP2	100	83.516	ENSSBOG00000028734	TDP2	91	86.786	Saimiri_boliviensis_boliviensis
ENSBTAG00000000365	TDP2	97	67.797	ENSSHAG00000002506	TDP2	91	68.895	Sarcophilus_harrisii
ENSBTAG00000000365	TDP2	69	52.381	ENSSFOG00015011322	-	71	52.381	Scleropages_formosus
ENSBTAG00000000365	TDP2	77	79.286	ENSSARG00000013547	TDP2	100	79.286	Sorex_araneus
ENSBTAG00000000365	TDP2	94	64.773	ENSSPUG00000008288	TDP2	95	64.773	Sphenodon_punctatus
ENSBTAG00000000365	TDP2	100	89.835	ENSSSCG00000001092	TDP2	100	89.835	Sus_scrofa
ENSBTAG00000000365	TDP2	72	67.557	ENSTGUG00000009035	TDP2	100	67.557	Taeniopygia_guttata
ENSBTAG00000000365	TDP2	70	51.550	ENSTRUG00000012218	-	89	51.550	Takifugu_rubripes
ENSBTAG00000000365	TDP2	93	52.676	ENSTRUG00000014347	tdp2b	96	52.676	Takifugu_rubripes
ENSBTAG00000000365	TDP2	70	51.737	ENSTNIG00000010260	TDP2	98	51.737	Tetraodon_nigroviridis
ENSBTAG00000000365	TDP2	94	52.941	ENSTNIG00000017792	tdp2b	96	52.941	Tetraodon_nigroviridis
ENSBTAG00000000365	TDP2	100	88.462	ENSTTRG00000016376	TDP2	100	88.462	Tursiops_truncatus
ENSBTAG00000000365	TDP2	97	81.127	ENSUAMG00000025939	TDP2	95	81.159	Ursus_americanus
ENSBTAG00000000365	TDP2	77	88.214	ENSUMAG00000020111	TDP2	93	88.214	Ursus_maritimus
ENSBTAG00000000365	TDP2	96	63.158	ENSXETG00000014826	tdp2	95	63.099	Xenopus_tropicalis
ENSBTAG00000000365	TDP2	68	49.004	ENSXCOG00000010778	-	69	49.004	Xiphophorus_couchianus
ENSBTAG00000000365	TDP2	68	49.004	ENSXMAG00000022252	-	72	49.004	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000287	magnesium ion binding	-	ISS	Function
GO:0003697	single-stranded DNA binding	-	ISS	Function
GO:0004518	nuclease activity	-	IEA	Function
GO:0005730	nucleolus	-	IEA	Component
GO:0006302	double-strand break repair	-	ISS	Process
GO:0016235	aggresome	-	IEA	Component
GO:0016605	PML body	-	ISS	Component
GO:0030145	manganese ion binding	-	ISS	Function
GO:0036317	tyrosyl-RNA phosphodiesterase activity	-	IEA	Function
GO:0048666	neuron development	-	ISS	Process
GO:0070260	5'-tyrosyl-DNA phosphodiesterase activity	-	ISS	Function
GO:0090305	nucleic acid phosphodiester bond hydrolysis	-	IEA	Process