EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSBTAG00000000837 (Gene tree)
Gene ID: 286764
Gene Symbol: PARP1
Alias: ADPRT|ARTD1
Full Name: Bos taurus poly(ADP-ribose) polymerase 1 (PARP1)%2C mRNA.
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Minus strand
Length: 41350 bases
Position: chr16:29365008-29406357
Accession: NM_174751
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000001113	PARP	PF00644.20	2.9e-73	1	1
ENSBTAP00000059409	PARP	PF00644.20	1.1e-58	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000080992	-	3084	-	ENSBTAP00000059409	1027 (aa)	-	-
ENSBTAT00000001113	-	3586	XM_005216796	ENSBTAP00000001113	1016 (aa)	XP_005216853	F1MU08

Gene Model

Click here to download ENSBTAG00000000837's gene model file

Pathways

Pathway ID	Pathway Name	Source
bta03410	Base excision repair	KEGG
bta04210	Apoptosis	KEGG
bta04217	Necroptosis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000000837's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSBTAG00000000837	PARP1	50	30.983	ENSBTAG00000000671	PARP3	97	30.983
ENSBTAG00000000837	PARP1	50	42.667	ENSBTAG00000009374	PARP2	93	42.667

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000000837	PARP1	100	90.757	ENSG00000143799	PARP1	100	90.757	Homo_sapiens
ENSBTAG00000000837	PARP1	100	68.719	ENSAPOG00000006414	parp1	100	68.426	Acanthochromis_polyacanthus
ENSBTAG00000000837	PARP1	99	88.810	ENSAMEG00000014451	PARP1	99	88.810	Ailuropoda_melanoleuca
ENSBTAG00000000837	PARP1	100	67.483	ENSACIG00000005651	parp1	100	67.191	Amphilophus_citrinellus
ENSBTAG00000000837	PARP1	100	69.110	ENSAOCG00000021005	parp1	100	68.524	Amphiprion_ocellaris
ENSBTAG00000000837	PARP1	100	69.110	ENSAPEG00000004784	parp1	100	68.426	Amphiprion_percula
ENSBTAG00000000837	PARP1	99	68.861	ENSATEG00000010457	parp1	99	67.976	Anabas_testudineus
ENSBTAG00000000837	PARP1	87	79.432	ENSAPLG00000014039	PARP1	100	79.432	Anas_platyrhynchos
ENSBTAG00000000837	PARP1	100	74.828	ENSACAG00000006189	PARP1	100	74.803	Anolis_carolinensis
ENSBTAG00000000837	PARP1	100	90.551	ENSANAG00000032699	PARP1	100	90.551	Aotus_nancymaae
ENSBTAG00000000837	PARP1	100	69.223	ENSACLG00000015489	parp1	100	68.928	Astatotilapia_calliptera
ENSBTAG00000000837	PARP1	100	66.602	ENSAMXG00000006465	parp1	100	66.602	Astyanax_mexicanus
ENSBTAG00000000837	PARP1	83	43.825	WBGene00004049	parp-1	100	45.977	Caenorhabditis_elegans
ENSBTAG00000000837	PARP1	100	90.256	ENSCJAG00000012831	PARP1	100	90.256	Callithrix_jacchus
ENSBTAG00000000837	PARP1	99	89.641	ENSCAFG00000016089	PARP1	100	89.641	Canis_familiaris
ENSBTAG00000000837	PARP1	100	89.676	ENSCAFG00020001660	PARP1	100	89.676	Canis_lupus_dingo
ENSBTAG00000000837	PARP1	100	97.835	ENSCHIG00000018072	PARP1	100	97.835	Capra_hircus
ENSBTAG00000000837	PARP1	98	91.513	ENSTSYG00000003699	PARP1	100	91.621	Carlito_syrichta
ENSBTAG00000000837	PARP1	99	74.184	ENSCAPG00000011113	-	100	72.917	Cavia_aperea
ENSBTAG00000000837	PARP1	100	88.692	ENSCPOG00000015643	-	100	87.992	Cavia_porcellus
ENSBTAG00000000837	PARP1	100	90.551	ENSCCAG00000033484	PARP1	100	90.551	Cebus_capucinus
ENSBTAG00000000837	PARP1	100	90.560	ENSCATG00000038981	PARP1	100	89.872	Cercocebus_atys
ENSBTAG00000000837	PARP1	100	88.004	ENSCLAG00000006637	PARP1	100	88.004	Chinchilla_lanigera
ENSBTAG00000000837	PARP1	66	96.875	ENSCHOG00000003539	PARP1	66	96.875	Choloepus_hoffmanni
ENSBTAG00000000837	PARP1	100	77.974	ENSCPBG00000011958	PARP1	100	77.974	Chrysemys_picta_bellii
ENSBTAG00000000837	PARP1	99	90.174	ENSCANG00000041340	PARP1	100	89.560	Colobus_angolensis_palliatus
ENSBTAG00000000837	PARP1	100	88.987	ENSCGRG00001020559	Parp1	100	88.987	Cricetulus_griseus_chok1gshd
ENSBTAG00000000837	PARP1	99	89.150	ENSCGRG00000004864	Parp1	100	89.150	Cricetulus_griseus_crigri
ENSBTAG00000000837	PARP1	100	67.937	ENSCSEG00000020665	parp1	99	76.721	Cynoglossus_semilaevis
ENSBTAG00000000837	PARP1	99	67.647	ENSCVAG00000021372	parp1	99	67.241	Cyprinodon_variegatus
ENSBTAG00000000837	PARP1	100	67.934	ENSDARG00000019529	parp1	100	68.262	Danio_rerio
ENSBTAG00000000837	PARP1	99	87.269	ENSDNOG00000012059	PARP1	100	87.269	Dasypus_novemcinctus
ENSBTAG00000000837	PARP1	99	86.578	ENSDORG00000005234	Parp1	100	86.578	Dipodomys_ordii
ENSBTAG00000000837	PARP1	99	41.707	FBgn0010247	Parp	99	41.610	Drosophila_melanogaster
ENSBTAG00000000837	PARP1	88	97.656	ENSETEG00000013254	PARP1	88	97.656	Echinops_telfairi
ENSBTAG00000000837	PARP1	99	56.325	ENSEBUG00000005820	parp1	100	56.056	Eptatretus_burgeri
ENSBTAG00000000837	PARP1	98	90.490	ENSEASG00005013275	PARP1	99	90.500	Equus_asinus_asinus
ENSBTAG00000000837	PARP1	100	90.462	ENSECAG00000019207	PARP1	100	90.560	Equus_caballus
ENSBTAG00000000837	PARP1	100	86.248	ENSEEUG00000012253	PARP1	100	86.248	Erinaceus_europaeus
ENSBTAG00000000837	PARP1	99	69.579	ENSELUG00000017336	parp1	100	68.633	Esox_lucius
ENSBTAG00000000837	PARP1	99	87.984	ENSFCAG00000005777	PARP1	100	87.984	Felis_catus
ENSBTAG00000000837	PARP1	99	77.073	ENSFALG00000011578	PARP1	100	77.175	Ficedula_albicollis
ENSBTAG00000000837	PARP1	99	87.513	ENSFDAG00000017662	PARP1	100	87.513	Fukomys_damarensis
ENSBTAG00000000837	PARP1	99	68.468	ENSFHEG00000001117	parp1	99	67.878	Fundulus_heteroclitus
ENSBTAG00000000837	PARP1	99	67.485	ENSGMOG00000014929	parp1	99	67.387	Gadus_morhua
ENSBTAG00000000837	PARP1	100	77.483	ENSGALG00000009228	PARP1	100	77.581	Gallus_gallus
ENSBTAG00000000837	PARP1	100	68.035	ENSGAFG00000010450	parp1	100	67.644	Gambusia_affinis
ENSBTAG00000000837	PARP1	100	67.253	ENSGACG00000011280	parp1	100	66.959	Gasterosteus_aculeatus
ENSBTAG00000000837	PARP1	100	77.778	ENSGAGG00000010066	PARP1	100	77.778	Gopherus_agassizii
ENSBTAG00000000837	PARP1	100	90.462	ENSGGOG00000006308	PARP1	100	90.462	Gorilla_gorilla
ENSBTAG00000000837	PARP1	100	69.306	ENSHBUG00000010490	parp1	100	68.719	Haplochromis_burtoni
ENSBTAG00000000837	PARP1	99	87.014	ENSHGLG00000003992	PARP1	93	86.694	Heterocephalus_glaber_female
ENSBTAG00000000837	PARP1	99	87.014	ENSHGLG00100016965	PARP1	93	86.694	Heterocephalus_glaber_male
ENSBTAG00000000837	PARP1	100	67.805	ENSHCOG00000011619	parp1	100	67.610	Hippocampus_comes
ENSBTAG00000000837	PARP1	100	66.085	ENSIPUG00000020250	parp1	100	66.570	Ictalurus_punctatus
ENSBTAG00000000837	PARP1	100	90.364	ENSSTOG00000016000	PARP1	100	90.364	Ictidomys_tridecemlineatus
ENSBTAG00000000837	PARP1	100	87.132	ENSJJAG00000023497	Parp1	100	86.640	Jaculus_jaculus
ENSBTAG00000000837	PARP1	100	68.426	ENSKMAG00000011627	parp1	100	68.426	Kryptolebias_marmoratus
ENSBTAG00000000837	PARP1	100	68.787	ENSLBEG00000013376	parp1	100	68.200	Labrus_bergylta
ENSBTAG00000000837	PARP1	99	55.354	ENSLACG00000002735	PARP1	100	57.268	Latimeria_chalumnae
ENSBTAG00000000837	PARP1	100	70.617	ENSLOCG00000015798	parp1	100	71.050	Lepisosteus_oculatus
ENSBTAG00000000837	PARP1	99	87.922	ENSLAFG00000007830	PARP1	100	87.615	Loxodonta_africana
ENSBTAG00000000837	PARP1	100	90.462	ENSMFAG00000002526	PARP1	100	89.774	Macaca_fascicularis
ENSBTAG00000000837	PARP1	100	90.560	ENSMMUG00000021820	PARP1	100	89.872	Macaca_mulatta
ENSBTAG00000000837	PARP1	100	90.560	ENSMNEG00000034074	PARP1	100	89.872	Macaca_nemestrina
ENSBTAG00000000837	PARP1	100	88.333	ENSMLEG00000012344	PARP1	100	87.647	Mandrillus_leucophaeus
ENSBTAG00000000837	PARP1	100	69.185	ENSMAMG00000020652	parp1	100	68.989	Mastacembelus_armatus
ENSBTAG00000000837	PARP1	100	69.501	ENSMZEG00005016907	parp1	100	68.915	Maylandia_zebra
ENSBTAG00000000837	PARP1	99	77.482	ENSMGAG00000007760	PARP1	100	77.584	Meleagris_gallopavo
ENSBTAG00000000837	PARP1	100	88.594	ENSMAUG00000008306	Parp1	100	88.594	Mesocricetus_auratus
ENSBTAG00000000837	PARP1	100	86.332	ENSMICG00000017076	PARP1	100	86.332	Microcebus_murinus
ENSBTAG00000000837	PARP1	100	88.299	ENSMOCG00000014315	Parp1	100	88.299	Microtus_ochrogaster
ENSBTAG00000000837	PARP1	100	67.773	ENSMMOG00000015966	parp1	100	67.613	Mola_mola
ENSBTAG00000000837	PARP1	100	81.201	ENSMODG00000006076	PARP1	100	82.301	Monodelphis_domestica
ENSBTAG00000000837	PARP1	100	66.960	ENSMALG00000004057	parp1	100	66.373	Monopterus_albus
ENSBTAG00000000837	PARP1	100	88.605	MGP_CAROLIEiJ_G0014978	Parp1	100	96.939	Mus_caroli
ENSBTAG00000000837	PARP1	100	88.507	ENSMUSG00000026496	Parp1	99	96.939	Mus_musculus
ENSBTAG00000000837	PARP1	100	88.507	MGP_SPRETEiJ_G0015777	Parp1	100	96.939	Mus_spretus
ENSBTAG00000000837	PARP1	100	88.594	ENSMPUG00000004585	PARP1	100	87.992	Mustela_putorius_furo
ENSBTAG00000000837	PARP1	93	72.192	ENSMLUG00000012285	PARP1	100	72.628	Myotis_lucifugus
ENSBTAG00000000837	PARP1	100	88.594	ENSNGAG00000003885	Parp1	100	88.692	Nannospalax_galili
ENSBTAG00000000837	PARP1	100	69.125	ENSNBRG00000017434	parp1	100	68.830	Neolamprologus_brichardi
ENSBTAG00000000837	PARP1	95	95.767	ENSNLEG00000013905	PARP1	100	95.767	Nomascus_leucogenys
ENSBTAG00000000837	PARP1	66	91.343	ENSMEUG00000007720	PARP1	87	91.343	Notamacropus_eugenii
ENSBTAG00000000837	PARP1	100	89.381	ENSOPRG00000011722	PARP1	100	89.381	Ochotona_princeps
ENSBTAG00000000837	PARP1	100	86.220	ENSODEG00000007424	PARP1	100	86.220	Octodon_degus
ENSBTAG00000000837	PARP1	100	69.404	ENSONIG00000013486	parp1	100	68.817	Oreochromis_niloticus
ENSBTAG00000000837	PARP1	99	81.455	ENSOANG00000001488	PARP1	100	81.455	Ornithorhynchus_anatinus
ENSBTAG00000000837	PARP1	100	90.177	ENSOCUG00000017820	PARP1	100	90.177	Oryctolagus_cuniculus
ENSBTAG00000000837	PARP1	100	67.840	ENSORLG00000013691	parp1	100	67.742	Oryzias_latipes
ENSBTAG00000000837	PARP1	99	67.650	ENSORLG00020001074	parp1	99	67.548	Oryzias_latipes_hni
ENSBTAG00000000837	PARP1	100	67.937	ENSORLG00015007090	parp1	100	67.840	Oryzias_latipes_hsok
ENSBTAG00000000837	PARP1	100	89.479	ENSOGAG00000016206	PARP1	100	89.479	Otolemur_garnettii
ENSBTAG00000000837	PARP1	100	98.228	ENSOARG00000000811	PARP1	100	98.228	Ovis_aries
ENSBTAG00000000837	PARP1	100	90.167	ENSPPAG00000040862	PARP1	100	90.167	Pan_paniscus
ENSBTAG00000000837	PARP1	99	88.012	ENSPPRG00000003528	PARP1	100	88.012	Panthera_pardus
ENSBTAG00000000837	PARP1	97	75.026	ENSPTIG00000009102	PARP1	98	75.026	Panthera_tigris_altaica
ENSBTAG00000000837	PARP1	100	90.167	ENSPTRG00000002049	PARP1	100	90.167	Pan_troglodytes
ENSBTAG00000000837	PARP1	100	90.668	ENSPANG00000011198	PARP1	100	89.980	Papio_anubis
ENSBTAG00000000837	PARP1	100	68.235	ENSPKIG00000006039	parp1	100	68.787	Paramormyrops_kingsleyae
ENSBTAG00000000837	PARP1	99	77.597	ENSPSIG00000016374	PARP1	100	77.245	Pelodiscus_sinensis
ENSBTAG00000000837	PARP1	100	65.561	ENSPMGG00000008936	parp1	100	65.561	Periophthalmus_magnuspinnatus
ENSBTAG00000000837	PARP1	100	88.397	ENSPEMG00000020230	Parp1	100	88.397	Peromyscus_maniculatus_bairdii
ENSBTAG00000000837	PARP1	100	79.823	ENSPCIG00000006436	PARP1	100	86.558	Phascolarctos_cinereus
ENSBTAG00000000837	PARP1	99	67.945	ENSPFOG00000002342	parp1	99	67.453	Poecilia_formosa
ENSBTAG00000000837	PARP1	99	68.535	ENSPLAG00000000909	parp1	99	68.437	Poecilia_latipinna
ENSBTAG00000000837	PARP1	99	68.633	ENSPMEG00000013979	parp1	99	68.240	Poecilia_mexicana
ENSBTAG00000000837	PARP1	99	68.732	ENSPREG00000001114	parp1	99	68.338	Poecilia_reticulata
ENSBTAG00000000837	PARP1	99	90.872	ENSPPYG00000000164	PARP1	100	90.872	Pongo_abelii
ENSBTAG00000000837	PARP1	65	96.914	ENSPCAG00000005558	-	65	96.914	Procavia_capensis
ENSBTAG00000000837	PARP1	100	90.069	ENSPCOG00000016918	PARP1	100	90.167	Propithecus_coquereli
ENSBTAG00000000837	PARP1	91	94.811	ENSPVAG00000005543	PARP1	86	94.811	Pteropus_vampyrus
ENSBTAG00000000837	PARP1	100	69.223	ENSPNYG00000009702	parp1	100	68.928	Pundamilia_nyererei
ENSBTAG00000000837	PARP1	100	68.222	ENSPNAG00000002787	parp1	100	68.610	Pygocentrus_nattereri
ENSBTAG00000000837	PARP1	100	87.721	ENSRNOG00000003084	Parp1	100	87.426	Rattus_norvegicus
ENSBTAG00000000837	PARP1	100	90.265	ENSRBIG00000044893	PARP1	100	89.676	Rhinopithecus_bieti
ENSBTAG00000000837	PARP1	100	90.265	ENSRROG00000029280	PARP1	100	89.676	Rhinopithecus_roxellana
ENSBTAG00000000837	PARP1	100	64.314	ENSRROG00000040615	-	100	68.613	Rhinopithecus_roxellana
ENSBTAG00000000837	PARP1	100	90.157	ENSSBOG00000010144	PARP1	100	90.157	Saimiri_boliviensis_boliviensis
ENSBTAG00000000837	PARP1	99	81.846	ENSSHAG00000001991	PARP1	100	82.359	Sarcophilus_harrisii
ENSBTAG00000000837	PARP1	100	68.524	ENSSFOG00015020017	parp1	100	68.524	Scleropages_formosus
ENSBTAG00000000837	PARP1	100	68.622	ENSSMAG00000013799	parp1	100	68.328	Scophthalmus_maximus
ENSBTAG00000000837	PARP1	100	67.840	ENSSDUG00000016626	parp1	100	67.351	Seriola_dumerili
ENSBTAG00000000837	PARP1	100	67.937	ENSSLDG00000006384	parp1	100	67.351	Seriola_lalandi_dorsalis
ENSBTAG00000000837	PARP1	53	95.139	ENSSARG00000009436	-	59	95.139	Sorex_araneus
ENSBTAG00000000837	PARP1	100	72.960	ENSSPUG00000007790	PARP1	100	73.353	Sphenodon_punctatus
ENSBTAG00000000837	PARP1	100	67.157	ENSSPAG00000019074	parp1	100	68.337	Stegastes_partitus
ENSBTAG00000000837	PARP1	100	89.872	ENSSSCG00000023660	PARP1	100	89.872	Sus_scrofa
ENSBTAG00000000837	PARP1	96	78.222	ENSTGUG00000004260	-	100	78.222	Taeniopygia_guttata
ENSBTAG00000000837	PARP1	100	68.524	ENSTRUG00000014490	parp1	100	68.524	Takifugu_rubripes
ENSBTAG00000000837	PARP1	100	67.283	ENSTNIG00000016384	parp1	100	66.894	Tetraodon_nigroviridis
ENSBTAG00000000837	PARP1	83	95.890	ENSTBEG00000002364	PARP1	92	95.890	Tupaia_belangeri
ENSBTAG00000000837	PARP1	100	86.713	ENSTTRG00000000188	PARP1	100	86.713	Tursiops_truncatus
ENSBTAG00000000837	PARP1	99	89.366	ENSUAMG00000014388	PARP1	100	89.366	Ursus_americanus
ENSBTAG00000000837	PARP1	97	80.813	ENSUMAG00000014555	PARP1	99	80.164	Ursus_maritimus
ENSBTAG00000000837	PARP1	84	96.992	ENSVPAG00000011411	PARP1	84	96.992	Vicugna_pacos
ENSBTAG00000000837	PARP1	99	89.641	ENSVVUG00000001655	PARP1	100	89.641	Vulpes_vulpes
ENSBTAG00000000837	PARP1	99	71.271	ENSXETG00000022610	parp1	99	71.572	Xenopus_tropicalis
ENSBTAG00000000837	PARP1	99	68.043	ENSXMAG00000003632	parp1	99	67.650	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003677	DNA binding	-	IEA	Function
GO:0005635	nuclear envelope	-	ISS	Component
GO:0005730	nucleolus	-	ISS	Component
GO:0006302	double-strand break repair	-	ISS	Process
GO:0006471	protein ADP-ribosylation	-	ISS	Process
GO:0006974	cellular response to DNA damage stimulus	-	ISS	Process
GO:0008270	zinc ion binding	-	IEA	Function
GO:0010613	positive regulation of cardiac muscle hypertrophy	-	ISS	Process
GO:0018312	peptidyl-serine ADP-ribosylation	-	ISS	Process
GO:0018424	peptidyl-glutamic acid poly-ADP-ribosylation	-	ISS	Process
GO:0030592	DNA ADP-ribosylation	-	ISS	Process
GO:0051287	NAD binding	-	IEA	Function
GO:0070212	protein poly-ADP-ribosylation	-	ISS	Process
GO:0070213	protein auto-ADP-ribosylation	-	ISS	Process
GO:0090734	site of DNA damage	-	ISS	Component
GO:1905168	positive regulation of double-strand break repair via homologous recombination	-	ISS	Process
GO:1990404	protein ADP-ribosylase activity	-	ISS	Function
GO:1990966	ATP generation from poly-ADP-D-ribose	-	ISS	Process