EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSBTAG00000001035 (Gene tree)
Gene ID: 541229
Gene Symbol: SF1
Alias: -
Full Name: Bos taurus splicing factor 1 (SF1)%2C mRNA.
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Minus strand
Length: 13562 bases
Position: chr29:43002801-43016362
Accession: NM_001081614
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000064187	KH_1	PF00013.29	3.3e-07	1	1
ENSBTAP00000001376	KH_1	PF00013.29	3.5e-07	1	1
ENSBTAP00000064187	zf-CCHC	PF00098.23	0.00022	1	1
ENSBTAP00000001376	zf-CCHC	PF00098.23	0.00024	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000085486	-	1812	-	ENSBTAP00000064187	603 (aa)	-	-
ENSBTAT00000001376	-	3182	-	ENSBTAP00000001376	639 (aa)	-	A2VDM7

Gene Model

Click here to download ENSBTAG00000001035's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000001035's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000001035	SF1	63	80.928	ENSAPOG00000012341	sf1	60	75.581	Acanthochromis_polyacanthus
ENSBTAG00000001035	SF1	92	94.737	ENSAMEG00000017828	SF1	91	94.737	Ailuropoda_melanoleuca
ENSBTAG00000001035	SF1	62	82.713	ENSACIG00000016514	sf1	62	78.043	Amphilophus_citrinellus
ENSBTAG00000001035	SF1	63	80.412	ENSAOCG00000010934	sf1	61	75.878	Amphiprion_ocellaris
ENSBTAG00000001035	SF1	63	80.412	ENSAPEG00000009498	sf1	61	75.878	Amphiprion_percula
ENSBTAG00000001035	SF1	61	81.579	ENSATEG00000001894	sf1	60	77.327	Anabas_testudineus
ENSBTAG00000001035	SF1	100	99.844	ENSANAG00000026664	-	100	99.844	Aotus_nancymaae
ENSBTAG00000001035	SF1	96	87.255	ENSANAG00000022607	-	99	87.562	Aotus_nancymaae
ENSBTAG00000001035	SF1	61	84.282	ENSACLG00000007633	sf1	84	71.306	Astatotilapia_calliptera
ENSBTAG00000001035	SF1	61	86.096	ENSAMXG00000003630	sf1	50	79.218	Astyanax_mexicanus
ENSBTAG00000001035	SF1	100	100.000	ENSCJAG00000002780	SF1	100	100.000	Callithrix_jacchus
ENSBTAG00000001035	SF1	94	99.666	ENSCAFG00000014239	SF1	94	99.666	Canis_familiaris
ENSBTAG00000001035	SF1	100	100.000	ENSCAFG00020014381	SF1	100	100.000	Canis_lupus_dingo
ENSBTAG00000001035	SF1	100	100.000	ENSCHIG00000025867	SF1	100	100.000	Capra_hircus
ENSBTAG00000001035	SF1	51	98.925	ENSTSYG00000033618	SF1	82	98.925	Carlito_syrichta
ENSBTAG00000001035	SF1	71	99.535	ENSCAPG00000010762	SF1	79	98.636	Cavia_aperea
ENSBTAG00000001035	SF1	92	99.320	ENSCPOG00000012290	SF1	96	99.228	Cavia_porcellus
ENSBTAG00000001035	SF1	100	80.438	ENSCCAG00000023781	-	90	87.879	Cebus_capucinus
ENSBTAG00000001035	SF1	94	99.666	ENSCCAG00000037881	SF1	96	100.000	Cebus_capucinus
ENSBTAG00000001035	SF1	100	100.000	ENSCATG00000011564	SF1	100	100.000	Cercocebus_atys
ENSBTAG00000001035	SF1	83	99.622	ENSCSAG00000007258	SF1	97	99.622	Chlorocebus_sabaeus
ENSBTAG00000001035	SF1	68	93.689	ENSCHOG00000006008	SF1	79	93.780	Choloepus_hoffmanni
ENSBTAG00000001035	SF1	81	86.486	ENSCPBG00000023763	SF1	66	85.135	Chrysemys_picta_bellii
ENSBTAG00000001035	SF1	62	58.115	ENSCING00000005564	-	74	60.372	Ciona_intestinalis
ENSBTAG00000001035	SF1	58	57.865	ENSCSAVG00000009055	-	56	66.667	Ciona_savignyi
ENSBTAG00000001035	SF1	100	100.000	ENSCANG00000042201	SF1	100	100.000	Colobus_angolensis_palliatus
ENSBTAG00000001035	SF1	100	99.531	ENSCGRG00001003677	Sf1	100	99.531	Cricetulus_griseus_chok1gshd
ENSBTAG00000001035	SF1	82	97.905	ENSCGRG00000001708	Sf1	97	97.905	Cricetulus_griseus_crigri
ENSBTAG00000001035	SF1	66	78.079	ENSCSEG00000014375	sf1	57	76.077	Cynoglossus_semilaevis
ENSBTAG00000001035	SF1	61	84.324	ENSCVAG00000001670	sf1	63	78.973	Cyprinodon_variegatus
ENSBTAG00000001035	SF1	79	81.390	ENSDARG00000008188	sf1	97	70.067	Danio_rerio
ENSBTAG00000001035	SF1	83	99.055	ENSDNOG00000001282	SF1	97	99.055	Dasypus_novemcinctus
ENSBTAG00000001035	SF1	100	100.000	ENSDORG00000016334	Sf1	100	100.000	Dipodomys_ordii
ENSBTAG00000001035	SF1	92	92.479	ENSETEG00000012830	SF1	82	91.453	Echinops_telfairi
ENSBTAG00000001035	SF1	83	99.244	ENSEASG00005018272	SF1	97	99.244	Equus_asinus_asinus
ENSBTAG00000001035	SF1	83	99.433	ENSECAG00000024544	SF1	97	99.433	Equus_caballus
ENSBTAG00000001035	SF1	65	99.237	ENSEEUG00000001058	SF1	100	99.237	Erinaceus_europaeus
ENSBTAG00000001035	SF1	61	81.432	ENSELUG00000013225	sf1	54	78.230	Esox_lucius
ENSBTAG00000001035	SF1	94	99.666	ENSFCAG00000012231	SF1	94	99.666	Felis_catus
ENSBTAG00000001035	SF1	90	95.652	ENSFDAG00000009833	SF1	89	95.652	Fukomys_damarensis
ENSBTAG00000001035	SF1	63	80.670	ENSFHEG00000022656	sf1	61	75.870	Fundulus_heteroclitus
ENSBTAG00000001035	SF1	55	87.941	ENSGMOG00000007469	sf1	62	87.941	Gadus_morhua
ENSBTAG00000001035	SF1	63	83.896	ENSGAFG00000019284	sf1	78	80.238	Gambusia_affinis
ENSBTAG00000001035	SF1	75	89.011	ENSGAGG00000021691	SF1	72	85.135	Gopherus_agassizii
ENSBTAG00000001035	SF1	61	82.895	ENSHBUG00000011598	sf1	61	77.262	Haplochromis_burtoni
ENSBTAG00000001035	SF1	94	99.666	ENSHGLG00000009541	SF1	94	99.666	Heterocephalus_glaber_female
ENSBTAG00000001035	SF1	72	89.376	ENSHGLG00100008076	-	87	87.067	Heterocephalus_glaber_male
ENSBTAG00000001035	SF1	84	79.732	ENSHGLG00100008255	-	94	86.555	Heterocephalus_glaber_male
ENSBTAG00000001035	SF1	97	78.822	ENSHGLG00100013879	-	80	100.000	Heterocephalus_glaber_male
ENSBTAG00000001035	SF1	62	81.088	ENSHCOG00000011388	sf1	58	76.755	Hippocampus_comes
ENSBTAG00000001035	SF1	76	86.214	ENSSTOG00000024353	-	77	87.788	Ictidomys_tridecemlineatus
ENSBTAG00000001035	SF1	98	100.000	ENSSTOG00000009790	-	100	100.000	Ictidomys_tridecemlineatus
ENSBTAG00000001035	SF1	100	99.844	ENSJJAG00000011788	Sf1	100	99.844	Jaculus_jaculus
ENSBTAG00000001035	SF1	63	82.398	ENSKMAG00000005854	sf1	63	77.283	Kryptolebias_marmoratus
ENSBTAG00000001035	SF1	75	82.461	ENSLBEG00000019836	sf1	64	77.990	Labrus_bergylta
ENSBTAG00000001035	SF1	65	78.333	ENSLACG00000018493	SF1	74	78.313	Latimeria_chalumnae
ENSBTAG00000001035	SF1	61	85.294	ENSLOCG00000002130	sf1	59	80.049	Lepisosteus_oculatus
ENSBTAG00000001035	SF1	90	99.654	ENSLAFG00000007201	SF1	90	99.654	Loxodonta_africana
ENSBTAG00000001035	SF1	100	100.000	ENSMFAG00000033122	SF1	100	100.000	Macaca_fascicularis
ENSBTAG00000001035	SF1	99	100.000	ENSMMUG00000022606	SF1	100	100.000	Macaca_mulatta
ENSBTAG00000001035	SF1	100	100.000	ENSMNEG00000037901	SF1	100	100.000	Macaca_nemestrina
ENSBTAG00000001035	SF1	98	100.000	ENSMLEG00000040706	SF1	95	100.000	Mandrillus_leucophaeus
ENSBTAG00000001035	SF1	62	81.347	ENSMAMG00000001780	sf1	58	77.966	Mastacembelus_armatus
ENSBTAG00000001035	SF1	61	82.632	ENSMZEG00005009196	sf1	61	77.030	Maylandia_zebra
ENSBTAG00000001035	SF1	94	99.165	ENSMAUG00000014064	Sf1	94	99.165	Mesocricetus_auratus
ENSBTAG00000001035	SF1	100	99.844	ENSMICG00000001202	SF1	100	99.844	Microcebus_murinus
ENSBTAG00000001035	SF1	94	98.998	ENSMOCG00000022038	Sf1	94	98.998	Microtus_ochrogaster
ENSBTAG00000001035	SF1	61	81.720	ENSMMOG00000020474	sf1	60	76.399	Mola_mola
ENSBTAG00000001035	SF1	74	94.407	ENSMODG00000029407	SF1	97	94.407	Monodelphis_domestica
ENSBTAG00000001035	SF1	62	82.888	ENSMALG00000020521	sf1	68	76.359	Monopterus_albus
ENSBTAG00000001035	SF1	100	99.374	MGP_CAROLIEiJ_G0022607	Sf1	100	99.625	Mus_caroli
ENSBTAG00000001035	SF1	100	99.374	ENSMUSG00000024949	Sf1	100	99.625	Mus_musculus
ENSBTAG00000001035	SF1	100	99.374	MGP_PahariEiJ_G0014101	Sf1	100	99.625	Mus_pahari
ENSBTAG00000001035	SF1	100	99.374	MGP_SPRETEiJ_G0023518	Sf1	100	99.625	Mus_spretus
ENSBTAG00000001035	SF1	100	98.748	ENSMPUG00000012684	SF1	100	98.748	Mustela_putorius_furo
ENSBTAG00000001035	SF1	76	94.530	ENSMLUG00000029800	-	78	94.934	Myotis_lucifugus
ENSBTAG00000001035	SF1	99	99.683	ENSMLUG00000015217	-	99	99.683	Myotis_lucifugus
ENSBTAG00000001035	SF1	94	99.499	ENSNGAG00000005550	Sf1	94	99.499	Nannospalax_galili
ENSBTAG00000001035	SF1	61	83.690	ENSNBRG00000017606	sf1	84	70.819	Neolamprologus_brichardi
ENSBTAG00000001035	SF1	100	99.844	ENSNLEG00000005236	-	100	99.844	Nomascus_leucogenys
ENSBTAG00000001035	SF1	80	98.246	ENSMEUG00000013424	SF1	97	98.246	Notamacropus_eugenii
ENSBTAG00000001035	SF1	74	99.158	ENSOPRG00000005008	SF1	96	99.158	Ochotona_princeps
ENSBTAG00000001035	SF1	92	93.857	ENSODEG00000006102	-	90	93.857	Octodon_degus
ENSBTAG00000001035	SF1	61	82.895	ENSONIG00000015728	sf1	61	77.262	Oreochromis_niloticus
ENSBTAG00000001035	SF1	65	88.041	ENSOANG00000002909	SF1	97	87.786	Ornithorhynchus_anatinus
ENSBTAG00000001035	SF1	92	99.492	ENSOCUG00000026486	SF1	94	99.492	Oryctolagus_cuniculus
ENSBTAG00000001035	SF1	63	80.563	ENSORLG00000011853	sf1	58	76.499	Oryzias_latipes
ENSBTAG00000001035	SF1	65	79.250	ENSORLG00020011834	sf1	60	75.352	Oryzias_latipes_hni
ENSBTAG00000001035	SF1	62	80.366	ENSORLG00015012855	sf1	59	76.259	Oryzias_latipes_hsok
ENSBTAG00000001035	SF1	63	80.051	ENSOMEG00000005210	sf1	60	77.458	Oryzias_melastigma
ENSBTAG00000001035	SF1	94	99.499	ENSOGAG00000016196	SF1	94	99.499	Otolemur_garnettii
ENSBTAG00000001035	SF1	85	92.807	ENSOARG00000009166	SF1	99	92.807	Ovis_aries
ENSBTAG00000001035	SF1	96	100.000	ENSPPAG00000002799	-	100	100.000	Pan_paniscus
ENSBTAG00000001035	SF1	96	100.000	ENSPPRG00000013566	SF1	100	100.000	Panthera_pardus
ENSBTAG00000001035	SF1	74	98.876	ENSPTIG00000016141	SF1	80	98.876	Panthera_tigris_altaica
ENSBTAG00000001035	SF1	94	99.666	ENSPTRG00000003846	SF1	99	100.000	Pan_troglodytes
ENSBTAG00000001035	SF1	94	97.682	ENSPANG00000020754	SF1	97	99.622	Papio_anubis
ENSBTAG00000001035	SF1	54	79.580	ENSPKIG00000012116	sf1	88	74.499	Paramormyrops_kingsleyae
ENSBTAG00000001035	SF1	58	87.179	ENSPSIG00000003610	SF1	97	75.490	Pelodiscus_sinensis
ENSBTAG00000001035	SF1	94	99.165	ENSPEMG00000010463	Sf1	94	99.165	Peromyscus_maniculatus_bairdii
ENSBTAG00000001035	SF1	100	98.905	ENSPCIG00000018173	SF1	100	98.905	Phascolarctos_cinereus
ENSBTAG00000001035	SF1	63	85.752	ENSPFOG00000013683	sf1	68	81.146	Poecilia_formosa
ENSBTAG00000001035	SF1	61	83.862	ENSPLAG00000018076	sf1	61	79.187	Poecilia_latipinna
ENSBTAG00000001035	SF1	61	83.862	ENSPMEG00000005726	sf1	62	79.426	Poecilia_mexicana
ENSBTAG00000001035	SF1	62	82.940	ENSPREG00000004155	sf1	59	78.708	Poecilia_reticulata
ENSBTAG00000001035	SF1	94	99.666	ENSPPYG00000003098	-	99	99.811	Pongo_abelii
ENSBTAG00000001035	SF1	82	97.909	ENSPCAG00000013631	SF1	78	97.909	Procavia_capensis
ENSBTAG00000001035	SF1	100	99.844	ENSPCOG00000027546	SF1	100	99.844	Propithecus_coquereli
ENSBTAG00000001035	SF1	82	97.909	ENSPVAG00000016938	SF1	79	97.909	Pteropus_vampyrus
ENSBTAG00000001035	SF1	61	82.632	ENSPNYG00000004673	sf1	59	78.199	Pundamilia_nyererei
ENSBTAG00000001035	SF1	62	85.450	ENSPNAG00000013072	sf1	59	78.606	Pygocentrus_nattereri
ENSBTAG00000001035	SF1	100	99.374	ENSRNOG00000021085	Sf1	100	99.374	Rattus_norvegicus
ENSBTAG00000001035	SF1	100	95.931	ENSRBIG00000042818	SF1	100	95.931	Rhinopithecus_bieti
ENSBTAG00000001035	SF1	79	99.602	ENSRROG00000045655	SF1	96	99.602	Rhinopithecus_roxellana
ENSBTAG00000001035	SF1	68	37.674	YLR116W	MSL5	61	43.182	Saccharomyces_cerevisiae
ENSBTAG00000001035	SF1	97	80.417	ENSSBOG00000022267	-	99	81.731	Saimiri_boliviensis_boliviensis
ENSBTAG00000001035	SF1	67	91.951	ENSSHAG00000006841	SF1	75	93.171	Sarcophilus_harrisii
ENSBTAG00000001035	SF1	95	64.812	ENSSFOG00015021978	sf1	55	76.329	Scleropages_formosus
ENSBTAG00000001035	SF1	68	76.112	ENSSMAG00000007549	sf1	63	76.526	Scophthalmus_maximus
ENSBTAG00000001035	SF1	63	80.206	ENSSDUG00000003903	sf1	63	76.402	Seriola_dumerili
ENSBTAG00000001035	SF1	81	95.745	ENSSARG00000008180	SF1	100	95.745	Sorex_araneus
ENSBTAG00000001035	SF1	79	82.759	ENSSPUG00000012907	SF1	86	81.226	Sphenodon_punctatus
ENSBTAG00000001035	SF1	63	80.155	ENSSPAG00000019060	sf1	61	75.878	Stegastes_partitus
ENSBTAG00000001035	SF1	100	99.844	ENSSSCG00000013021	SF1	100	99.844	Sus_scrofa
ENSBTAG00000001035	SF1	84	62.615	ENSTNIG00000004820	sf1	80	70.023	Tetraodon_nigroviridis
ENSBTAG00000001035	SF1	91	100.000	ENSTBEG00000013133	SF1	79	100.000	Tupaia_belangeri
ENSBTAG00000001035	SF1	81	95.174	ENSTTRG00000008857	SF1	96	95.543	Tursiops_truncatus
ENSBTAG00000001035	SF1	82	97.137	ENSUAMG00000011977	SF1	100	97.137	Ursus_americanus
ENSBTAG00000001035	SF1	84	100.000	ENSUMAG00000007268	SF1	89	100.000	Ursus_maritimus
ENSBTAG00000001035	SF1	59	100.000	ENSVPAG00000011912	SF1	66	100.000	Vicugna_pacos
ENSBTAG00000001035	SF1	83	99.622	ENSVVUG00000028585	SF1	97	99.622	Vulpes_vulpes
ENSBTAG00000001035	SF1	97	69.545	ENSXETG00000008434	sf1	68	81.553	Xenopus_tropicalis
ENSBTAG00000001035	SF1	61	85.205	ENSXCOG00000003704	sf1	75	80.941	Xiphophorus_couchianus
ENSBTAG00000001035	SF1	61	83.377	ENSXMAG00000007822	sf1	61	79.426	Xiphophorus_maculatus