EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSBTAG00000001038 (Gene tree)
Gene ID: 613304
Gene Symbol: SNRPB
Alias: -
Full Name: small nuclear ribonucleoprotein polypeptides B and B1
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Plus strand
Length: 9094 bases
Position: chr13:52666467-52675560
Accession: 35076
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000001379	LSM	PF01423.22	8.9e-20	1	1
ENSBTAP00000063047	LSM	PF01423.22	9.6e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
					(aa)

Gene Model

Click here to download ENSBTAG00000001038's gene model file

Pathways

Pathway ID	Pathway Name	Source
bta03040	Spliceosome	KEGG
bta05322	Systemic lupus erythematosus	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000001038's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSBTAG00000001038	SNRPB	96	91.403	ENSBTAG00000008251	SNRPN	96	91.080

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000001038	SNRPB	100	99.567	ENSG00000125835	SNRPB	100	99.567	Homo_sapiens
ENSBTAG00000001038	SNRPB	78	92.818	ENSAPOG00000019606	snrpb	69	86.058	Acanthochromis_polyacanthus
ENSBTAG00000001038	SNRPB	99	99.561	ENSAMEG00000011353	SNRPB	94	99.561	Ailuropoda_melanoleuca
ENSBTAG00000001038	SNRPB	76	92.571	ENSACIG00000014480	snrpb	88	85.644	Amphilophus_citrinellus
ENSBTAG00000001038	SNRPB	78	92.818	ENSAOCG00000006876	snrpb	85	86.058	Amphiprion_ocellaris
ENSBTAG00000001038	SNRPB	78	92.818	ENSAPEG00000021585	snrpb	87	86.058	Amphiprion_percula
ENSBTAG00000001038	SNRPB	78	92.265	ENSATEG00000009836	snrpb	85	85.577	Anabas_testudineus
ENSBTAG00000001038	SNRPB	92	94.836	ENSACAG00000002053	SNRPB	92	94.836	Anolis_carolinensis
ENSBTAG00000001038	SNRPB	100	99.567	ENSANAG00000024443	-	100	99.567	Aotus_nancymaae
ENSBTAG00000001038	SNRPB	93	91.589	ENSANAG00000020364	-	52	83.575	Aotus_nancymaae
ENSBTAG00000001038	SNRPB	99	92.609	ENSANAG00000036271	-	83	86.058	Aotus_nancymaae
ENSBTAG00000001038	SNRPB	78	92.818	ENSACLG00000014707	snrpb	85	86.058	Astatotilapia_calliptera
ENSBTAG00000001038	SNRPB	79	93.443	ENSAMXG00000029434	snrpb	91	83.710	Astyanax_mexicanus
ENSBTAG00000001038	SNRPB	93	92.056	ENSCJAG00000023097	-	79	92.063	Callithrix_jacchus
ENSBTAG00000001038	SNRPB	100	99.567	ENSCJAG00000020971	-	100	99.567	Callithrix_jacchus
ENSBTAG00000001038	SNRPB	100	99.567	ENSCAFG00000006693	-	100	99.567	Canis_familiaris
ENSBTAG00000001038	SNRPB	81	87.895	ENSCAFG00000031109	-	79	84.211	Canis_familiaris
ENSBTAG00000001038	SNRPB	99	99.563	ENSCAFG00020016981	-	95	99.563	Canis_lupus_dingo
ENSBTAG00000001038	SNRPB	100	100.000	ENSCHIG00000025449	-	100	100.000	Capra_hircus
ENSBTAG00000001038	SNRPB	97	76.444	ENSTSYG00000032303	-	81	66.516	Carlito_syrichta
ENSBTAG00000001038	SNRPB	100	99.567	ENSTSYG00000014498	-	100	99.567	Carlito_syrichta
ENSBTAG00000001038	SNRPB	99	99.565	ENSCAPG00000012669	SNRPB	100	99.565	Cavia_aperea
ENSBTAG00000001038	SNRPB	100	99.567	ENSCPOG00000039408	SNRPB	100	99.567	Cavia_porcellus
ENSBTAG00000001038	SNRPB	55	88.189	ENSCCAG00000035140	-	89	86.275	Cebus_capucinus
ENSBTAG00000001038	SNRPB	100	99.567	ENSCCAG00000026002	SNRPB	100	99.567	Cebus_capucinus
ENSBTAG00000001038	SNRPB	100	99.567	ENSCATG00000030230	SNRPB	100	99.567	Cercocebus_atys
ENSBTAG00000001038	SNRPB	98	99.558	ENSCLAG00000012442	SNRPB	95	99.558	Chinchilla_lanigera
ENSBTAG00000001038	SNRPB	100	99.567	ENSCSAG00000010840	SNRPB	100	99.567	Chlorocebus_sabaeus
ENSBTAG00000001038	SNRPB	99	96.070	ENSCPBG00000026801	SNRPB	99	96.070	Chrysemys_picta_bellii
ENSBTAG00000001038	SNRPB	100	99.567	ENSCANG00000019461	SNRPB	100	99.567	Colobus_angolensis_palliatus
ENSBTAG00000001038	SNRPB	100	99.567	ENSCGRG00001023046	Snrpb	100	99.567	Cricetulus_griseus_chok1gshd
ENSBTAG00000001038	SNRPB	96	99.548	ENSCGRG00000010423	Snrpb	98	99.548	Cricetulus_griseus_crigri
ENSBTAG00000001038	SNRPB	79	92.896	ENSCSEG00000020328	snrpb	91	81.900	Cynoglossus_semilaevis
ENSBTAG00000001038	SNRPB	73	93.452	ENSDARG00000011125	snrpb	91	83.710	Danio_rerio
ENSBTAG00000001038	SNRPB	96	95.023	ENSDNOG00000007896	-	91	95.023	Dasypus_novemcinctus
ENSBTAG00000001038	SNRPB	99	99.563	ENSDNOG00000015545	-	95	99.563	Dasypus_novemcinctus
ENSBTAG00000001038	SNRPB	97	100.000	ENSDORG00000029558	Snrpb	97	100.000	Dipodomys_ordii
ENSBTAG00000001038	SNRPB	76	63.388	FBgn0262601	SmB	98	59.091	Drosophila_melanogaster
ENSBTAG00000001038	SNRPB	79	79.235	ENSETEG00000006830	SNRPB	96	71.041	Echinops_telfairi
ENSBTAG00000001038	SNRPB	81	78.495	ENSEBUG00000007467	SNRPB	62	88.591	Eptatretus_burgeri
ENSBTAG00000001038	SNRPB	100	99.134	ENSEASG00005012991	SNRPB	100	99.134	Equus_asinus_asinus
ENSBTAG00000001038	SNRPB	100	99.567	ENSECAG00000011944	SNRPB	100	99.567	Equus_caballus
ENSBTAG00000001038	SNRPB	98	99.558	ENSEEUG00000015568	SNRPB	80	99.558	Erinaceus_europaeus
ENSBTAG00000001038	SNRPB	69	91.071	ENSELUG00000014564	snrpb	88	84.653	Esox_lucius
ENSBTAG00000001038	SNRPB	100	99.567	ENSFCAG00000034090	-	100	99.567	Felis_catus
ENSBTAG00000001038	SNRPB	74	95.349	ENSFALG00000004866	SNRPB	92	95.305	Ficedula_albicollis
ENSBTAG00000001038	SNRPB	100	99.567	ENSFDAG00000009937	SNRPB	100	99.567	Fukomys_damarensis
ENSBTAG00000001038	SNRPB	78	95.556	ENSGALG00000035421	SNRPN	92	95.475	Gallus_gallus
ENSBTAG00000001038	SNRPB	74	92.982	ENSGAFG00000019558	snrpb	72	94.012	Gambusia_affinis
ENSBTAG00000001038	SNRPB	79	91.257	ENSGACG00000003262	snrpb	91	80.995	Gasterosteus_aculeatus
ENSBTAG00000001038	SNRPB	99	96.070	ENSGAGG00000001308	SNRPB	95	96.070	Gopherus_agassizii
ENSBTAG00000001038	SNRPB	100	99.567	ENSGGOG00000016138	SNRPB	100	99.567	Gorilla_gorilla
ENSBTAG00000001038	SNRPB	78	92.818	ENSHBUG00000008369	snrpb	85	86.058	Haplochromis_burtoni
ENSBTAG00000001038	SNRPB	100	99.567	ENSHGLG00000016241	-	100	99.567	Heterocephalus_glaber_female
ENSBTAG00000001038	SNRPB	65	90.000	ENSHGLG00000016505	-	90	84.127	Heterocephalus_glaber_female
ENSBTAG00000001038	SNRPB	100	99.567	ENSHGLG00100012877	-	100	99.567	Heterocephalus_glaber_male
ENSBTAG00000001038	SNRPB	65	90.000	ENSHGLG00100004178	-	90	84.127	Heterocephalus_glaber_male
ENSBTAG00000001038	SNRPB	79	92.896	ENSHCOG00000014888	snrpb	91	81.900	Hippocampus_comes
ENSBTAG00000001038	SNRPB	73	93.452	ENSIPUG00000024569	SNRPB	91	83.710	Ictalurus_punctatus
ENSBTAG00000001038	SNRPB	99	97.817	ENSSTOG00000033664	-	95	97.817	Ictidomys_tridecemlineatus
ENSBTAG00000001038	SNRPB	94	81.944	ENSSTOG00000027821	-	62	99.265	Ictidomys_tridecemlineatus
ENSBTAG00000001038	SNRPB	100	99.567	ENSJJAG00000024170	Snrpb	100	99.567	Jaculus_jaculus
ENSBTAG00000001038	SNRPB	74	94.186	ENSKMAG00000014494	snrpb	83	85.577	Kryptolebias_marmoratus
ENSBTAG00000001038	SNRPB	79	92.896	ENSLBEG00000005678	snrpb	91	81.900	Labrus_bergylta
ENSBTAG00000001038	SNRPB	96	92.760	ENSLACG00000011459	SNRPB	92	92.760	Latimeria_chalumnae
ENSBTAG00000001038	SNRPB	73	94.048	ENSLOCG00000002687	snrpb	91	84.163	Lepisosteus_oculatus
ENSBTAG00000001038	SNRPB	99	96.491	ENSLAFG00000017588	SNRPB	99	96.491	Loxodonta_africana
ENSBTAG00000001038	SNRPB	100	99.567	ENSMFAG00000038756	SNRPB	100	99.567	Macaca_fascicularis
ENSBTAG00000001038	SNRPB	100	99.567	ENSMMUG00000010050	SNRPB	100	99.567	Macaca_mulatta
ENSBTAG00000001038	SNRPB	100	99.567	ENSMNEG00000027954	SNRPB	100	99.567	Macaca_nemestrina
ENSBTAG00000001038	SNRPB	100	99.567	ENSMLEG00000022346	SNRPB	100	99.567	Mandrillus_leucophaeus
ENSBTAG00000001038	SNRPB	78	92.778	ENSMAMG00000009294	snrpb	82	85.990	Mastacembelus_armatus
ENSBTAG00000001038	SNRPB	78	92.818	ENSMZEG00005011856	snrpb	85	86.058	Maylandia_zebra
ENSBTAG00000001038	SNRPB	100	100.000	ENSMICG00000016519	SNRPB	100	100.000	Microcebus_murinus
ENSBTAG00000001038	SNRPB	97	85.778	ENSMICG00000015983	-	98	83.051	Microcebus_murinus
ENSBTAG00000001038	SNRPB	100	99.134	ENSMOCG00000002892	-	100	99.134	Microtus_ochrogaster
ENSBTAG00000001038	SNRPB	85	80.102	ENSMOCG00000021362	-	94	67.421	Microtus_ochrogaster
ENSBTAG00000001038	SNRPB	79	92.308	ENSMMOG00000013226	snrpb	87	85.990	Mola_mola
ENSBTAG00000001038	SNRPB	78	92.265	ENSMALG00000020839	snrpb	69	85.577	Monopterus_albus
ENSBTAG00000001038	SNRPB	100	99.134	MGP_CAROLIEiJ_G0024293	Snrpb	100	99.134	Mus_caroli
ENSBTAG00000001038	SNRPB	100	99.134	ENSMUSG00000027404	Snrpb	100	99.134	Mus_musculus
ENSBTAG00000001038	SNRPB	100	99.134	MGP_PahariEiJ_G0025738	Snrpb	100	99.134	Mus_pahari
ENSBTAG00000001038	SNRPB	100	99.134	MGP_SPRETEiJ_G0025213	Snrpb	100	99.134	Mus_spretus
ENSBTAG00000001038	SNRPB	100	99.567	ENSMPUG00000009283	SNRPB	100	99.567	Mustela_putorius_furo
ENSBTAG00000001038	SNRPB	99	97.380	ENSMLUG00000016951	SNRPB	95	97.380	Myotis_lucifugus
ENSBTAG00000001038	SNRPB	100	99.567	ENSNGAG00000012051	Snrpb	100	99.567	Nannospalax_galili
ENSBTAG00000001038	SNRPB	78	90.055	ENSNBRG00000006353	snrpb	88	75.630	Neolamprologus_brichardi
ENSBTAG00000001038	SNRPB	99	99.563	ENSNLEG00000029067	SNRPB	96	99.561	Nomascus_leucogenys
ENSBTAG00000001038	SNRPB	97	96.889	ENSMEUG00000015625	SNRPB	100	96.889	Notamacropus_eugenii
ENSBTAG00000001038	SNRPB	98	96.018	ENSODEG00000016060	-	95	96.018	Octodon_degus
ENSBTAG00000001038	SNRPB	100	99.567	ENSODEG00000004305	-	100	99.567	Octodon_degus
ENSBTAG00000001038	SNRPB	78	92.818	ENSONIG00000000248	snrpb	85	86.058	Oreochromis_niloticus
ENSBTAG00000001038	SNRPB	93	95.349	ENSOCUG00000021456	-	91	85.068	Oryctolagus_cuniculus
ENSBTAG00000001038	SNRPB	99	97.380	ENSOCUG00000028215	-	95	97.380	Oryctolagus_cuniculus
ENSBTAG00000001038	SNRPB	77	93.296	ENSOCUG00000022423	-	86	96.429	Oryctolagus_cuniculus
ENSBTAG00000001038	SNRPB	91	72.986	ENSOCUG00000026813	-	88	68.447	Oryctolagus_cuniculus
ENSBTAG00000001038	SNRPB	99	100.000	ENSOCUG00000014042	-	95	100.000	Oryctolagus_cuniculus
ENSBTAG00000001038	SNRPB	78	92.265	ENSORLG00000021862	snrpb	85	85.577	Oryzias_latipes
ENSBTAG00000001038	SNRPB	99	99.563	ENSOGAG00000016149	SNRPB	95	99.563	Otolemur_garnettii
ENSBTAG00000001038	SNRPB	100	100.000	ENSOARG00000006740	SNRPB	100	100.000	Ovis_aries
ENSBTAG00000001038	SNRPB	100	99.567	ENSPPAG00000036314	SNRPB	100	99.567	Pan_paniscus
ENSBTAG00000001038	SNRPB	100	99.567	ENSPPRG00000003233	-	100	99.567	Panthera_pardus
ENSBTAG00000001038	SNRPB	99	99.565	ENSPTIG00000007468	SNRPB	99	99.565	Panthera_tigris_altaica
ENSBTAG00000001038	SNRPB	100	99.567	ENSPTRG00000013176	SNRPB	100	99.567	Pan_troglodytes
ENSBTAG00000001038	SNRPB	99	99.565	ENSPANG00000020362	SNRPB	95	99.563	Papio_anubis
ENSBTAG00000001038	SNRPB	73	92.857	ENSPKIG00000002865	snrpb	91	82.805	Paramormyrops_kingsleyae
ENSBTAG00000001038	SNRPB	99	96.053	ENSPSIG00000014125	SNRPB	94	96.053	Pelodiscus_sinensis
ENSBTAG00000001038	SNRPB	77	90.449	ENSPMGG00000016349	snrpb	69	92.025	Periophthalmus_magnuspinnatus
ENSBTAG00000001038	SNRPB	100	99.567	ENSPEMG00000007948	Snrpb	100	99.567	Peromyscus_maniculatus_bairdii
ENSBTAG00000001038	SNRPB	99	97.368	ENSPCIG00000004694	SNRPB	95	97.368	Phascolarctos_cinereus
ENSBTAG00000001038	SNRPB	62	95.973	ENSPFOG00000011802	snrpb	63	95.973	Poecilia_formosa
ENSBTAG00000001038	SNRPB	64	85.806	ENSPLAG00000014130	snrpb	59	95.556	Poecilia_latipinna
ENSBTAG00000001038	SNRPB	82	76.842	ENSPREG00000015515	snrpb	62	95.556	Poecilia_reticulata
ENSBTAG00000001038	SNRPB	100	99.567	ENSPPYG00000010841	SNRPB	100	99.567	Pongo_abelii
ENSBTAG00000001038	SNRPB	100	99.567	ENSPCOG00000013686	SNRPB	100	99.567	Propithecus_coquereli
ENSBTAG00000001038	SNRPB	98	98.238	ENSPVAG00000017013	SNRPB	80	98.238	Pteropus_vampyrus
ENSBTAG00000001038	SNRPB	78	92.818	ENSPNYG00000014788	snrpb	85	86.058	Pundamilia_nyererei
ENSBTAG00000001038	SNRPB	79	93.443	ENSPNAG00000016126	snrpb	91	84.163	Pygocentrus_nattereri
ENSBTAG00000001038	SNRPB	100	99.567	ENSRNOG00000006961	Snrpb	100	99.567	Rattus_norvegicus
ENSBTAG00000001038	SNRPB	100	99.134	ENSRBIG00000040505	SNRPB	100	99.134	Rhinopithecus_bieti
ENSBTAG00000001038	SNRPB	100	99.567	ENSRROG00000036094	SNRPB	100	99.567	Rhinopithecus_roxellana
ENSBTAG00000001038	SNRPB	100	99.567	ENSSBOG00000027310	SNRPB	100	99.567	Saimiri_boliviensis_boliviensis
ENSBTAG00000001038	SNRPB	99	97.817	ENSSHAG00000010394	SNRPB	95	97.817	Sarcophilus_harrisii
ENSBTAG00000001038	SNRPB	73	92.262	ENSSFOG00015002870	snrpb	86	87.019	Scleropages_formosus
ENSBTAG00000001038	SNRPB	79	91.257	ENSSMAG00000006766	snrpb	91	81.448	Scophthalmus_maximus
ENSBTAG00000001038	SNRPB	78	92.818	ENSSDUG00000018539	snrpb	85	86.058	Seriola_dumerili
ENSBTAG00000001038	SNRPB	78	92.818	ENSSLDG00000022391	snrpb	85	86.058	Seriola_lalandi_dorsalis
ENSBTAG00000001038	SNRPB	95	87.727	ENSSARG00000003084	SNRPB	94	87.727	Sorex_araneus
ENSBTAG00000001038	SNRPB	99	96.053	ENSSPUG00000015659	SNRPB	95	96.053	Sphenodon_punctatus
ENSBTAG00000001038	SNRPB	78	92.818	ENSSPAG00000021992	snrpb	85	86.058	Stegastes_partitus
ENSBTAG00000001038	SNRPB	100	100.000	ENSSSCG00000040857	-	100	100.000	Sus_scrofa
ENSBTAG00000001038	SNRPB	100	80.519	ENSSSCG00000011966	-	91	76.415	Sus_scrofa
ENSBTAG00000001038	SNRPB	77	79.661	ENSTGUG00000005684	SNRPB	59	96.429	Taeniopygia_guttata
ENSBTAG00000001038	SNRPB	79	91.803	ENSTRUG00000023094	snrpb	89	85.577	Takifugu_rubripes
ENSBTAG00000001038	SNRPB	79	91.803	ENSTNIG00000002991	snrpb	91	81.448	Tetraodon_nigroviridis
ENSBTAG00000001038	SNRPB	78	99.471	ENSUAMG00000005984	-	90	99.471	Ursus_americanus
ENSBTAG00000001038	SNRPB	59	99.270	ENSUMAG00000002123	-	63	99.270	Ursus_maritimus
ENSBTAG00000001038	SNRPB	99	99.127	ENSVVUG00000025654	-	95	99.127	Vulpes_vulpes
ENSBTAG00000001038	SNRPB	97	79.295	ENSVVUG00000010086	-	85	80.612	Vulpes_vulpes
ENSBTAG00000001038	SNRPB	98	45.098	ENSVVUG00000018297	-	75	45.098	Vulpes_vulpes
ENSBTAG00000001038	SNRPB	96	95.023	ENSXETG00000027266	snrpb	92	84.163	Xenopus_tropicalis
ENSBTAG00000001038	SNRPB	74	78.947	ENSXMAG00000028767	snrpb	58	95.556	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000387	spliceosomal snRNP assembly	-	ISS	Process
GO:0000398	mRNA splicing, via spliceosome	-	ISS	Process
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	-	ISS	Component
GO:0005683	U7 snRNP	-	ISS	Component
GO:0005685	U1 snRNP	-	ISS	Component
GO:0005687	U4 snRNP	-	ISS	Component
GO:0005829	cytosol	-	ISS	Component
GO:0034709	methylosome	-	ISS	Component
GO:0034719	SMN-Sm protein complex	-	ISS	Component
GO:0046540	U4/U6 x U5 tri-snRNP complex	-	ISS	Component
GO:0071005	U2-type precatalytic spliceosome	-	ISS	Component
GO:0071007	U2-type catalytic step 2 spliceosome	-	ISS	Component