EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSBTAG00000001134 (Gene tree)
Gene ID: 527938
Gene Symbol: SRRT
Alias: -
Full Name: Bos taurus serrate%2C RNA effector molecule (SRRT)%2C mRNA.
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Minus strand
Length: 15702 bases
Position: chr25:35768779-35784480
Accession: NM_001083708
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000001507	ARS2	PF04959.13	1.3e-90	1	1
ENSBTAP00000001510	ARS2	PF04959.13	1.3e-90	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000001510	-	4482	-	ENSBTAP00000001510	876 (aa)	-	A4IFB1
ENSBTAT00000001507	-	3058	XM_005225138	ENSBTAP00000001507	876 (aa)	XP_005225195	A4IFB1

Gene Model

Click here to download ENSBTAG00000001134's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000001134's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000001134	SRRT	100	97.374	ENSG00000087087	SRRT	98	100.000	Homo_sapiens
ENSBTAG00000001134	SRRT	53	75.484	ENSAPOG00000002304	srrt	96	63.384	Acanthochromis_polyacanthus
ENSBTAG00000001134	SRRT	98	92.421	ENSAMEG00000014506	SRRT	98	93.213	Ailuropoda_melanoleuca
ENSBTAG00000001134	SRRT	79	75.269	ENSACIG00000015795	srrt	85	75.269	Amphilophus_citrinellus
ENSBTAG00000001134	SRRT	93	55.370	ENSAOCG00000009189	-	96	56.713	Amphiprion_ocellaris
ENSBTAG00000001134	SRRT	84	75.699	ENSAOCG00000009693	srrt	89	75.699	Amphiprion_ocellaris
ENSBTAG00000001134	SRRT	93	55.370	ENSAPEG00000020016	-	96	56.713	Amphiprion_percula
ENSBTAG00000001134	SRRT	84	75.269	ENSAPEG00000003646	srrt	85	75.269	Amphiprion_percula
ENSBTAG00000001134	SRRT	55	62.298	ENSATEG00000003652	-	85	64.301	Anabas_testudineus
ENSBTAG00000001134	SRRT	87	73.118	ENSATEG00000014425	srrt	93	73.978	Anabas_testudineus
ENSBTAG00000001134	SRRT	95	76.896	ENSACAG00000001014	SRRT	96	77.059	Anolis_carolinensis
ENSBTAG00000001134	SRRT	100	97.032	ENSANAG00000031718	SRRT	100	97.032	Aotus_nancymaae
ENSBTAG00000001134	SRRT	55	61.414	ENSACLG00000009423	-	52	63.848	Astatotilapia_calliptera
ENSBTAG00000001134	SRRT	53	74.194	ENSACLG00000013156	srrt	50	74.194	Astatotilapia_calliptera
ENSBTAG00000001134	SRRT	52	75.163	ENSAMXG00000016671	srrt	50	75.652	Astyanax_mexicanus
ENSBTAG00000001134	SRRT	71	39.506	WBGene00017085	E01A2.2	85	42.710	Caenorhabditis_elegans
ENSBTAG00000001134	SRRT	100	97.032	ENSCJAG00000014917	SRRT	100	97.032	Callithrix_jacchus
ENSBTAG00000001134	SRRT	100	97.260	ENSCAFG00000023538	SRRT	100	97.260	Canis_familiaris
ENSBTAG00000001134	SRRT	100	96.689	ENSCAFG00020013358	SRRT	100	96.689	Canis_lupus_dingo
ENSBTAG00000001134	SRRT	100	99.087	ENSCHIG00000010495	SRRT	100	99.087	Capra_hircus
ENSBTAG00000001134	SRRT	96	92.738	ENSTSYG00000036426	SRRT	99	93.062	Carlito_syrichta
ENSBTAG00000001134	SRRT	95	94.132	ENSCAPG00000013586	SRRT	100	94.371	Cavia_aperea
ENSBTAG00000001134	SRRT	100	97.035	ENSCPOG00000001739	SRRT	100	97.035	Cavia_porcellus
ENSBTAG00000001134	SRRT	100	97.032	ENSCCAG00000015877	SRRT	100	97.032	Cebus_capucinus
ENSBTAG00000001134	SRRT	100	97.260	ENSCATG00000036306	SRRT	100	97.260	Cercocebus_atys
ENSBTAG00000001134	SRRT	100	97.146	ENSCLAG00000007568	SRRT	100	97.146	Chinchilla_lanigera
ENSBTAG00000001134	SRRT	100	97.146	ENSCSAG00000017996	SRRT	100	97.146	Chlorocebus_sabaeus
ENSBTAG00000001134	SRRT	67	79.492	ENSCHOG00000007815	SRRT	69	93.370	Choloepus_hoffmanni
ENSBTAG00000001134	SRRT	74	80.534	ENSCPBG00000011553	SRRT	86	78.246	Chrysemys_picta_bellii
ENSBTAG00000001134	SRRT	100	42.637	ENSCING00000003506	-	54	51.867	Ciona_intestinalis
ENSBTAG00000001134	SRRT	100	40.517	ENSCSAVG00000008394	-	81	54.039	Ciona_savignyi
ENSBTAG00000001134	SRRT	100	96.461	ENSCANG00000034556	SRRT	100	96.461	Colobus_angolensis_palliatus
ENSBTAG00000001134	SRRT	98	94.988	ENSCGRG00001001594	Srrt	98	94.988	Cricetulus_griseus_chok1gshd
ENSBTAG00000001134	SRRT	98	87.093	ENSCGRG00000007292	Srrt	100	92.734	Cricetulus_griseus_crigri
ENSBTAG00000001134	SRRT	93	52.721	ENSCSEG00000005233	-	54	62.924	Cynoglossus_semilaevis
ENSBTAG00000001134	SRRT	53	66.381	ENSCSEG00000017878	srrt	50	67.238	Cynoglossus_semilaevis
ENSBTAG00000001134	SRRT	90	54.887	ENSCVAG00000017344	-	51	62.217	Cyprinodon_variegatus
ENSBTAG00000001134	SRRT	95	64.839	ENSCVAG00000019848	srrt	96	64.923	Cyprinodon_variegatus
ENSBTAG00000001134	SRRT	53	75.536	ENSDARG00000017762	srrt	51	77.039	Danio_rerio
ENSBTAG00000001134	SRRT	100	97.146	ENSDNOG00000003851	SRRT	100	97.146	Dasypus_novemcinctus
ENSBTAG00000001134	SRRT	100	95.563	ENSDORG00000005584	Srrt	100	95.563	Dipodomys_ordii
ENSBTAG00000001134	SRRT	84	51.255	FBgn0033062	Ars2	73	48.757	Drosophila_melanogaster
ENSBTAG00000001134	SRRT	86	94.211	ENSETEG00000016175	SRRT	82	94.211	Echinops_telfairi
ENSBTAG00000001134	SRRT	78	52.794	ENSEBUG00000008517	-	76	65.278	Eptatretus_burgeri
ENSBTAG00000001134	SRRT	100	97.374	ENSEASG00005016956	SRRT	100	97.374	Equus_asinus_asinus
ENSBTAG00000001134	SRRT	100	97.489	ENSECAG00000012292	SRRT	100	97.489	Equus_caballus
ENSBTAG00000001134	SRRT	85	96.037	ENSEEUG00000009117	SRRT	85	96.037	Erinaceus_europaeus
ENSBTAG00000001134	SRRT	93	55.412	ENSELUG00000021216	-	53	64.241	Esox_lucius
ENSBTAG00000001134	SRRT	100	97.489	ENSFCAG00000006855	SRRT	100	97.489	Felis_catus
ENSBTAG00000001134	SRRT	58	52.564	ENSFALG00000007524	-	85	63.542	Ficedula_albicollis
ENSBTAG00000001134	SRRT	100	92.237	ENSFDAG00000021347	SRRT	98	92.056	Fukomys_damarensis
ENSBTAG00000001134	SRRT	74	74.163	ENSFHEG00000002756	srrt	89	74.163	Fundulus_heteroclitus
ENSBTAG00000001134	SRRT	55	54.379	ENSFHEG00000004105	-	93	55.297	Fundulus_heteroclitus
ENSBTAG00000001134	SRRT	95	61.655	ENSGMOG00000018619	srrt	51	70.108	Gadus_morhua
ENSBTAG00000001134	SRRT	93	52.381	ENSGAFG00000020383	-	54	61.229	Gambusia_affinis
ENSBTAG00000001134	SRRT	53	74.194	ENSGAFG00000005423	srrt	51	74.194	Gambusia_affinis
ENSBTAG00000001134	SRRT	93	51.777	ENSGACG00000001100	-	53	61.555	Gasterosteus_aculeatus
ENSBTAG00000001134	SRRT	95	62.372	ENSGACG00000020387	srrt	51	73.774	Gasterosteus_aculeatus
ENSBTAG00000001134	SRRT	100	97.374	ENSGGOG00000001508	SRRT	99	97.374	Gorilla_gorilla
ENSBTAG00000001134	SRRT	53	74.409	ENSHBUG00000002942	srrt	50	74.409	Haplochromis_burtoni
ENSBTAG00000001134	SRRT	100	96.014	ENSHGLG00000008344	Srrt	100	96.014	Heterocephalus_glaber_female
ENSBTAG00000001134	SRRT	98	96.028	ENSHGLG00100018857	Srrt	98	96.028	Heterocephalus_glaber_male
ENSBTAG00000001134	SRRT	93	51.404	ENSHCOG00000008904	-	56	61.017	Hippocampus_comes
ENSBTAG00000001134	SRRT	98	62.471	ENSHCOG00000005403	srrt	92	71.183	Hippocampus_comes
ENSBTAG00000001134	SRRT	53	75.375	ENSIPUG00000021150	srrt	51	76.231	Ictalurus_punctatus
ENSBTAG00000001134	SRRT	100	96.689	ENSSTOG00000013776	SRRT	100	96.689	Ictidomys_tridecemlineatus
ENSBTAG00000001134	SRRT	98	93.808	ENSJJAG00000010446	Srrt	100	92.486	Jaculus_jaculus
ENSBTAG00000001134	SRRT	95	63.528	ENSKMAG00000013599	srrt	54	73.763	Kryptolebias_marmoratus
ENSBTAG00000001134	SRRT	93	52.061	ENSKMAG00000008468	-	53	62.140	Kryptolebias_marmoratus
ENSBTAG00000001134	SRRT	53	74.464	ENSLBEG00000016308	srrt	54	76.231	Labrus_bergylta
ENSBTAG00000001134	SRRT	95	64.252	ENSLACG00000001089	SRRT	96	63.882	Latimeria_chalumnae
ENSBTAG00000001134	SRRT	67	78.035	ENSLOCG00000013658	srrt	50	87.755	Lepisosteus_oculatus
ENSBTAG00000001134	SRRT	100	97.374	ENSLAFG00000007725	SRRT	100	97.374	Loxodonta_africana
ENSBTAG00000001134	SRRT	100	96.575	ENSMFAG00000033745	SRRT	100	96.575	Macaca_fascicularis
ENSBTAG00000001134	SRRT	100	97.146	ENSMMUG00000021255	SRRT	100	97.146	Macaca_mulatta
ENSBTAG00000001134	SRRT	100	97.146	ENSMNEG00000041864	SRRT	100	97.146	Macaca_nemestrina
ENSBTAG00000001134	SRRT	100	96.575	ENSMLEG00000029479	SRRT	100	96.575	Mandrillus_leucophaeus
ENSBTAG00000001134	SRRT	93	53.710	ENSMAMG00000010681	-	52	65.539	Mastacembelus_armatus
ENSBTAG00000001134	SRRT	53	72.903	ENSMAMG00000014311	srrt	96	64.426	Mastacembelus_armatus
ENSBTAG00000001134	SRRT	55	61.414	ENSMZEG00005028002	-	52	63.848	Maylandia_zebra
ENSBTAG00000001134	SRRT	53	74.194	ENSMZEG00005016135	srrt	50	74.194	Maylandia_zebra
ENSBTAG00000001134	SRRT	98	95.911	ENSMAUG00000011386	Srrt	100	94.220	Mesocricetus_auratus
ENSBTAG00000001134	SRRT	100	97.146	ENSMICG00000009471	SRRT	100	97.146	Microcebus_murinus
ENSBTAG00000001134	SRRT	98	95.093	ENSMOCG00000001971	Srrt	100	94.412	Microtus_ochrogaster
ENSBTAG00000001134	SRRT	95	64.852	ENSMMOG00000016399	srrt	54	73.978	Mola_mola
ENSBTAG00000001134	SRRT	86	55.084	ENSMMOG00000011137	-	55	65.126	Mola_mola
ENSBTAG00000001134	SRRT	53	89.099	ENSMODG00000004862	SRRT	90	90.397	Monodelphis_domestica
ENSBTAG00000001134	SRRT	90	62.010	ENSMALG00000018604	srrt	80	70.968	Monopterus_albus
ENSBTAG00000001134	SRRT	59	48.833	ENSMALG00000005567	-	84	51.828	Monopterus_albus
ENSBTAG00000001134	SRRT	98	95.327	MGP_CAROLIEiJ_G0027870	Srrt	100	97.794	Mus_caroli
ENSBTAG00000001134	SRRT	98	95.327	ENSMUSG00000037364	Srrt	99	97.794	Mus_musculus
ENSBTAG00000001134	SRRT	98	95.093	MGP_PahariEiJ_G0024456	Srrt	100	97.426	Mus_pahari
ENSBTAG00000001134	SRRT	98	95.327	MGP_SPRETEiJ_G0028875	Srrt	100	97.794	Mus_spretus
ENSBTAG00000001134	SRRT	100	97.603	ENSMPUG00000015839	SRRT	100	97.603	Mustela_putorius_furo
ENSBTAG00000001134	SRRT	100	97.374	ENSMLUG00000009975	SRRT	100	97.374	Myotis_lucifugus
ENSBTAG00000001134	SRRT	100	96.689	ENSNGAG00000023715	Srrt	100	96.689	Nannospalax_galili
ENSBTAG00000001134	SRRT	53	72.903	ENSNBRG00000019100	srrt	52	72.903	Neolamprologus_brichardi
ENSBTAG00000001134	SRRT	95	86.643	ENSNLEG00000011987	SRRT	99	85.523	Nomascus_leucogenys
ENSBTAG00000001134	SRRT	98	73.666	ENSMEUG00000011941	SRRT	98	73.898	Notamacropus_eugenii
ENSBTAG00000001134	SRRT	62	96.947	ENSOPRG00000002502	-	67	96.947	Ochotona_princeps
ENSBTAG00000001134	SRRT	100	95.434	ENSODEG00000016856	SRRT	100	95.434	Octodon_degus
ENSBTAG00000001134	SRRT	93	53.901	ENSONIG00000016080	-	52	63.080	Oreochromis_niloticus
ENSBTAG00000001134	SRRT	53	74.409	ENSONIG00000004242	srrt	52	74.194	Oreochromis_niloticus
ENSBTAG00000001134	SRRT	96	64.516	ENSORLG00000008120	srrt	52	73.548	Oryzias_latipes
ENSBTAG00000001134	SRRT	96	64.483	ENSORLG00020003058	srrt	52	73.333	Oryzias_latipes_hni
ENSBTAG00000001134	SRRT	96	64.787	ENSORLG00015008062	srrt	52	73.333	Oryzias_latipes_hsok
ENSBTAG00000001134	SRRT	93	56.083	ENSOMEG00000006963	-	53	64.331	Oryzias_melastigma
ENSBTAG00000001134	SRRT	96	65.167	ENSOMEG00000003155	srrt	56	73.763	Oryzias_melastigma
ENSBTAG00000001134	SRRT	100	97.489	ENSOGAG00000017242	SRRT	100	97.489	Otolemur_garnettii
ENSBTAG00000001134	SRRT	100	98.630	ENSOARG00000015645	SRRT	100	98.630	Ovis_aries
ENSBTAG00000001134	SRRT	100	96.689	ENSPPAG00000041090	SRRT	100	96.689	Pan_paniscus
ENSBTAG00000001134	SRRT	100	96.575	ENSPPRG00000009557	SRRT	100	96.575	Panthera_pardus
ENSBTAG00000001134	SRRT	100	97.374	ENSPTIG00000014355	SRRT	100	97.374	Panthera_tigris_altaica
ENSBTAG00000001134	SRRT	100	96.689	ENSPTRG00000019511	SRRT	100	96.689	Pan_troglodytes
ENSBTAG00000001134	SRRT	97	94.651	ENSPANG00000020763	SRRT	98	94.651	Papio_anubis
ENSBTAG00000001134	SRRT	94	66.787	ENSPKIG00000022212	-	52	75.914	Paramormyrops_kingsleyae
ENSBTAG00000001134	SRRT	96	68.230	ENSPKIG00000005434	srrt	54	79.015	Paramormyrops_kingsleyae
ENSBTAG00000001134	SRRT	95	78.648	ENSPSIG00000016311	SRRT	96	80.165	Pelodiscus_sinensis
ENSBTAG00000001134	SRRT	53	73.978	ENSPMGG00000002841	srrt	56	73.978	Periophthalmus_magnuspinnatus
ENSBTAG00000001134	SRRT	98	93.692	ENSPEMG00000010834	Srrt	100	92.678	Peromyscus_maniculatus_bairdii
ENSBTAG00000001134	SRRT	96	55.059	ENSPMAG00000009614	-	55	64.979	Petromyzon_marinus
ENSBTAG00000001134	SRRT	98	90.719	ENSPCIG00000000816	SRRT	98	91.763	Phascolarctos_cinereus
ENSBTAG00000001134	SRRT	53	74.249	ENSPFOG00000005704	srrt	96	63.761	Poecilia_formosa
ENSBTAG00000001134	SRRT	93	52.375	ENSPFOG00000016554	-	54	61.017	Poecilia_formosa
ENSBTAG00000001134	SRRT	95	63.079	ENSPLAG00000021992	srrt	96	61.301	Poecilia_latipinna
ENSBTAG00000001134	SRRT	93	52.311	ENSPLAG00000004526	-	55	60.677	Poecilia_latipinna
ENSBTAG00000001134	SRRT	90	51.508	ENSPMEG00000001520	-	53	59.955	Poecilia_mexicana
ENSBTAG00000001134	SRRT	79	73.820	ENSPMEG00000001182	srrt	96	63.605	Poecilia_mexicana
ENSBTAG00000001134	SRRT	95	64.046	ENSPREG00000022308	srrt	96	62.041	Poecilia_reticulata
ENSBTAG00000001134	SRRT	98	86.799	ENSPPYG00000017432	SRRT	98	86.799	Pongo_abelii
ENSBTAG00000001134	SRRT	100	93.213	ENSPCAG00000001621	SRRT	100	93.213	Procavia_capensis
ENSBTAG00000001134	SRRT	100	97.374	ENSPCOG00000025751	SRRT	100	97.374	Propithecus_coquereli
ENSBTAG00000001134	SRRT	78	90.588	ENSPVAG00000000834	SRRT	100	90.588	Pteropus_vampyrus
ENSBTAG00000001134	SRRT	53	74.194	ENSPNYG00000018710	srrt	52	74.194	Pundamilia_nyererei
ENSBTAG00000001134	SRRT	76	70.732	ENSPNAG00000010629	srrt	77	63.578	Pygocentrus_nattereri
ENSBTAG00000001134	SRRT	54	84.713	ENSRNOG00000048277	AABR07035787.1	93	84.713	Rattus_norvegicus
ENSBTAG00000001134	SRRT	100	97.146	ENSRBIG00000035718	SRRT	100	97.146	Rhinopithecus_bieti
ENSBTAG00000001134	SRRT	100	97.146	ENSRROG00000030622	SRRT	100	97.146	Rhinopithecus_roxellana
ENSBTAG00000001134	SRRT	100	97.032	ENSSBOG00000033570	SRRT	100	97.032	Saimiri_boliviensis_boliviensis
ENSBTAG00000001134	SRRT	72	87.421	ENSSHAG00000007349	-	100	88.522	Sarcophilus_harrisii
ENSBTAG00000001134	SRRT	94	69.006	ENSSFOG00015017293	srrt	51	79.274	Scleropages_formosus
ENSBTAG00000001134	SRRT	95	63.636	ENSSMAG00000015342	srrt	54	74.409	Scophthalmus_maximus
ENSBTAG00000001134	SRRT	53	61.426	ENSSMAG00000018195	-	100	51.452	Scophthalmus_maximus
ENSBTAG00000001134	SRRT	54	53.814	ENSSDUG00000002051	-	93	54.219	Seriola_dumerili
ENSBTAG00000001134	SRRT	53	74.194	ENSSDUG00000012049	srrt	53	75.054	Seriola_dumerili
ENSBTAG00000001134	SRRT	84	74.194	ENSSLDG00000017477	srrt	81	75.054	Seriola_lalandi_dorsalis
ENSBTAG00000001134	SRRT	53	74.359	ENSSPAG00000005665	srrt	51	74.359	Stegastes_partitus
ENSBTAG00000001134	SRRT	82	53.403	ENSSPAG00000018943	-	95	55.639	Stegastes_partitus
ENSBTAG00000001134	SRRT	95	93.742	ENSSSCG00000024789	SRRT	99	93.674	Sus_scrofa
ENSBTAG00000001134	SRRT	90	54.115	ENSTRUG00000000023	-	51	59.955	Takifugu_rubripes
ENSBTAG00000001134	SRRT	96	63.337	ENSTRUG00000016075	srrt	53	72.292	Takifugu_rubripes
ENSBTAG00000001134	SRRT	74	62.215	ENSTNIG00000011779	srrt	100	61.070	Tetraodon_nigroviridis
ENSBTAG00000001134	SRRT	93	50.178	ENSTNIG00000003111	-	53	61.311	Tetraodon_nigroviridis
ENSBTAG00000001134	SRRT	63	95.393	ENSTBEG00000005212	SRRT	62	95.393	Tupaia_belangeri
ENSBTAG00000001134	SRRT	100	97.717	ENSTTRG00000011104	SRRT	100	97.717	Tursiops_truncatus
ENSBTAG00000001134	SRRT	95	97.727	ENSUAMG00000027997	SRRT	98	97.727	Ursus_americanus
ENSBTAG00000001134	SRRT	100	97.831	ENSUMAG00000011295	SRRT	100	97.831	Ursus_maritimus
ENSBTAG00000001134	SRRT	100	97.260	ENSVVUG00000023572	SRRT	100	97.260	Vulpes_vulpes
ENSBTAG00000001134	SRRT	71	79.503	ENSXETG00000025124	srrt	84	76.129	Xenopus_tropicalis
ENSBTAG00000001134	SRRT	53	51.068	ENSXCOG00000013105	-	90	51.282	Xiphophorus_couchianus
ENSBTAG00000001134	SRRT	93	53.106	ENSXMAG00000002090	-	54	61.277	Xiphophorus_maculatus
ENSBTAG00000001134	SRRT	96	63.837	ENSXMAG00000007627	srrt	90	74.624	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003677	DNA binding	-	ISS	Function
GO:0005654	nucleoplasm	-	ISS	Component
GO:0005737	cytoplasm	-	ISS	Component
GO:0006355	regulation of transcription, DNA-templated	-	ISS	Process
GO:0006397	mRNA processing	-	IEA	Process
GO:0008283	cell proliferation	-	ISS	Process
GO:0031053	primary miRNA processing	-	ISS	Process
GO:0032991	protein-containing complex	-	IEA	Component
GO:0050769	positive regulation of neurogenesis	-	IEA	Process
GO:0097150	neuronal stem cell population maintenance	-	ISS	Process