EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSBTAG00000001612 (Gene tree)
Gene ID: 535447
Gene Symbol: LSM1
Alias: -
Full Name: LSM1 homolog%2C mRNA degradation associated
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Minus strand
Length: 10490 bases
Position: chr27:33338482-33348971
Accession: 31050
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000002113	LSM	PF01423.22	2.5e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000002113	-	1181	-	ENSBTAP00000002113	133 (aa)	-	Q5E9Z8
ENSBTAT00000068368	-	549	-	ENSBTAP00000058955	117 (aa)	-	-

Gene Model

Click here to download ENSBTAG00000001612's gene model file

Pathways

Pathway ID	Pathway Name	Source
bta03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000001612's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSBTAG00000001612	LSM1	65	34.091	ENSBTAG00000012649	LSM8	92	34.091

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000001612	LSM1	100	99.248	ENSG00000175324	LSM1	100	99.248	Homo_sapiens
ENSBTAG00000001612	LSM1	100	84.962	ENSAPOG00000010833	lsm1	100	84.962	Acanthochromis_polyacanthus
ENSBTAG00000001612	LSM1	100	99.248	ENSAMEG00000011141	LSM1	100	99.248	Ailuropoda_melanoleuca
ENSBTAG00000001612	LSM1	58	92.208	ENSACIG00000019593	lsm1	64	92.208	Amphilophus_citrinellus
ENSBTAG00000001612	LSM1	100	84.962	ENSAOCG00000017997	-	100	84.962	Amphiprion_ocellaris
ENSBTAG00000001612	LSM1	100	84.962	ENSAOCG00000017096	lsm1	100	84.962	Amphiprion_ocellaris
ENSBTAG00000001612	LSM1	100	84.962	ENSAPEG00000011669	lsm1	100	84.962	Amphiprion_percula
ENSBTAG00000001612	LSM1	100	83.459	ENSATEG00000022266	lsm1	100	83.459	Anabas_testudineus
ENSBTAG00000001612	LSM1	100	99.248	ENSANAG00000027785	LSM1	100	99.248	Aotus_nancymaae
ENSBTAG00000001612	LSM1	100	83.459	ENSACLG00000011400	lsm1	100	83.459	Astatotilapia_calliptera
ENSBTAG00000001612	LSM1	100	85.714	ENSAMXG00000005441	lsm1	100	85.714	Astyanax_mexicanus
ENSBTAG00000001612	LSM1	70	58.065	WBGene00003076	lsm-1	73	58.065	Caenorhabditis_elegans
ENSBTAG00000001612	LSM1	100	100.000	ENSCJAG00000048015	LSM1	100	100.000	Callithrix_jacchus
ENSBTAG00000001612	LSM1	100	99.248	ENSCAFG00000006113	LSM1	100	99.248	Canis_familiaris
ENSBTAG00000001612	LSM1	100	99.248	ENSCAFG00020001822	LSM1	100	99.248	Canis_lupus_dingo
ENSBTAG00000001612	LSM1	100	99.248	ENSCHIG00000013194	LSM1	100	99.248	Capra_hircus
ENSBTAG00000001612	LSM1	100	99.248	ENSTSYG00000010394	LSM1	100	99.248	Carlito_syrichta
ENSBTAG00000001612	LSM1	100	99.248	ENSCPOG00000032671	LSM1	100	99.248	Cavia_porcellus
ENSBTAG00000001612	LSM1	100	99.248	ENSCCAG00000037171	LSM1	100	99.248	Cebus_capucinus
ENSBTAG00000001612	LSM1	100	99.248	ENSCATG00000020377	LSM1	100	99.248	Cercocebus_atys
ENSBTAG00000001612	LSM1	100	97.744	ENSCLAG00000001137	LSM1	100	97.744	Chinchilla_lanigera
ENSBTAG00000001612	LSM1	100	99.248	ENSCSAG00000015485	LSM1	100	99.248	Chlorocebus_sabaeus
ENSBTAG00000001612	LSM1	100	98.496	ENSCHOG00000006030	LSM1	100	98.496	Choloepus_hoffmanni
ENSBTAG00000001612	LSM1	95	88.189	ENSCPBG00000006569	LSM1	86	88.189	Chrysemys_picta_bellii
ENSBTAG00000001612	LSM1	92	71.311	ENSCING00000013536	-	92	71.311	Ciona_intestinalis
ENSBTAG00000001612	LSM1	100	99.248	ENSCANG00000019173	LSM1	100	99.248	Colobus_angolensis_palliatus
ENSBTAG00000001612	LSM1	80	81.982	ENSCGRG00001002259	-	97	81.982	Cricetulus_griseus_chok1gshd
ENSBTAG00000001612	LSM1	100	98.496	ENSCGRG00001024560	-	100	98.496	Cricetulus_griseus_chok1gshd
ENSBTAG00000001612	LSM1	100	98.496	ENSCGRG00000006554	-	100	98.496	Cricetulus_griseus_crigri
ENSBTAG00000001612	LSM1	80	81.982	ENSCGRG00000013603	-	97	81.982	Cricetulus_griseus_crigri
ENSBTAG00000001612	LSM1	100	81.955	ENSCSEG00000008319	lsm1	92	81.955	Cynoglossus_semilaevis
ENSBTAG00000001612	LSM1	100	82.707	ENSCSEG00000010570	lsm1	92	82.707	Cynoglossus_semilaevis
ENSBTAG00000001612	LSM1	100	82.707	ENSCVAG00000003871	lsm1	100	82.707	Cyprinodon_variegatus
ENSBTAG00000001612	LSM1	100	84.962	ENSDARG00000043177	lsm1	100	84.962	Danio_rerio
ENSBTAG00000001612	LSM1	100	98.496	ENSDNOG00000032911	-	100	98.496	Dasypus_novemcinctus
ENSBTAG00000001612	LSM1	89	79.832	ENSDNOG00000046620	-	100	79.832	Dasypus_novemcinctus
ENSBTAG00000001612	LSM1	100	99.248	ENSDNOG00000046387	-	100	99.248	Dasypus_novemcinctus
ENSBTAG00000001612	LSM1	100	93.233	ENSDNOG00000030989	-	100	93.233	Dasypus_novemcinctus
ENSBTAG00000001612	LSM1	100	99.248	ENSDORG00000028172	Lsm1	100	99.248	Dipodomys_ordii
ENSBTAG00000001612	LSM1	93	63.710	FBgn0261067	LSm1	91	63.710	Drosophila_melanogaster
ENSBTAG00000001612	LSM1	100	97.744	ENSEASG00005016677	LSM1	100	97.744	Equus_asinus_asinus
ENSBTAG00000001612	LSM1	100	97.744	ENSECAG00000010461	LSM1	100	97.744	Equus_caballus
ENSBTAG00000001612	LSM1	100	69.925	ENSEEUG00000015181	LSM1	100	69.925	Erinaceus_europaeus
ENSBTAG00000001612	LSM1	100	85.714	ENSELUG00000002322	lsm1	100	85.714	Esox_lucius
ENSBTAG00000001612	LSM1	100	83.459	ENSELUG00000023374	lsm1	100	83.459	Esox_lucius
ENSBTAG00000001612	LSM1	100	99.248	ENSFCAG00000039335	LSM1	100	99.248	Felis_catus
ENSBTAG00000001612	LSM1	89	94.068	ENSFALG00000006723	LSM1	100	94.068	Ficedula_albicollis
ENSBTAG00000001612	LSM1	100	99.248	ENSFDAG00000007658	LSM1	100	99.248	Fukomys_damarensis
ENSBTAG00000001612	LSM1	100	82.707	ENSFHEG00000009556	lsm1	100	82.707	Fundulus_heteroclitus
ENSBTAG00000001612	LSM1	100	82.707	ENSGMOG00000016651	lsm1	98	82.707	Gadus_morhua
ENSBTAG00000001612	LSM1	100	92.481	ENSGALG00000003245	LSM1	100	92.481	Gallus_gallus
ENSBTAG00000001612	LSM1	100	82.707	ENSGAFG00000011355	lsm1	100	82.707	Gambusia_affinis
ENSBTAG00000001612	LSM1	100	83.459	ENSGACG00000011763	lsm1	98	83.459	Gasterosteus_aculeatus
ENSBTAG00000001612	LSM1	100	94.737	ENSGAGG00000024065	LSM1	100	94.737	Gopherus_agassizii
ENSBTAG00000001612	LSM1	100	99.248	ENSGGOG00000022658	LSM1	100	99.248	Gorilla_gorilla
ENSBTAG00000001612	LSM1	100	83.459	ENSHBUG00000010897	lsm1	100	83.459	Haplochromis_burtoni
ENSBTAG00000001612	LSM1	100	99.248	ENSHGLG00000005711	LSM1	100	99.248	Heterocephalus_glaber_female
ENSBTAG00000001612	LSM1	100	78.947	ENSHGLG00000017574	-	100	78.947	Heterocephalus_glaber_female
ENSBTAG00000001612	LSM1	100	78.947	ENSHGLG00100012152	-	100	78.947	Heterocephalus_glaber_male
ENSBTAG00000001612	LSM1	100	99.248	ENSHGLG00100017660	LSM1	100	99.248	Heterocephalus_glaber_male
ENSBTAG00000001612	LSM1	100	83.459	ENSHCOG00000017233	lsm1	100	83.459	Hippocampus_comes
ENSBTAG00000001612	LSM1	100	84.211	ENSIPUG00000002312	LSM1	100	84.211	Ictalurus_punctatus
ENSBTAG00000001612	LSM1	58	100.000	ENSSTOG00000026870	LSM1	94	100.000	Ictidomys_tridecemlineatus
ENSBTAG00000001612	LSM1	100	97.744	ENSJJAG00000014605	-	100	97.744	Jaculus_jaculus
ENSBTAG00000001612	LSM1	100	83.459	ENSKMAG00000003016	lsm1	100	83.459	Kryptolebias_marmoratus
ENSBTAG00000001612	LSM1	100	83.459	ENSLBEG00000022352	lsm1	100	83.459	Labrus_bergylta
ENSBTAG00000001612	LSM1	89	89.831	ENSLACG00000010947	LSM1	98	89.831	Latimeria_chalumnae
ENSBTAG00000001612	LSM1	100	93.985	ENSLOCG00000015149	lsm1	100	93.985	Lepisosteus_oculatus
ENSBTAG00000001612	LSM1	100	99.248	ENSLAFG00000003534	LSM1	100	99.248	Loxodonta_africana
ENSBTAG00000001612	LSM1	100	99.248	ENSMFAG00000032661	LSM1	100	99.248	Macaca_fascicularis
ENSBTAG00000001612	LSM1	100	99.248	ENSMLEG00000034535	LSM1	100	99.248	Mandrillus_leucophaeus
ENSBTAG00000001612	LSM1	100	83.459	ENSMAMG00000007464	lsm1	100	83.459	Mastacembelus_armatus
ENSBTAG00000001612	LSM1	100	83.459	ENSMZEG00005010321	lsm1	100	83.459	Maylandia_zebra
ENSBTAG00000001612	LSM1	100	92.481	ENSMGAG00000002125	LSM1	100	92.481	Meleagris_gallopavo
ENSBTAG00000001612	LSM1	100	98.496	ENSMICG00000030726	LSM1	100	98.496	Microcebus_murinus
ENSBTAG00000001612	LSM1	100	98.496	ENSMOCG00000022817	Lsm1	100	98.496	Microtus_ochrogaster
ENSBTAG00000001612	LSM1	100	84.211	ENSMMOG00000015466	lsm1	100	84.211	Mola_mola
ENSBTAG00000001612	LSM1	100	96.992	ENSMODG00000010732	-	100	96.992	Monodelphis_domestica
ENSBTAG00000001612	LSM1	58	92.208	ENSMALG00000001478	lsm1	82	92.208	Monopterus_albus
ENSBTAG00000001612	LSM1	100	96.992	MGP_CAROLIEiJ_G0030930	Lsm1	100	96.992	Mus_caroli
ENSBTAG00000001612	LSM1	100	96.992	ENSMUSG00000037296	Lsm1	100	96.992	Mus_musculus
ENSBTAG00000001612	LSM1	100	96.992	MGP_PahariEiJ_G0021400	Lsm1	100	96.992	Mus_pahari
ENSBTAG00000001612	LSM1	100	96.992	MGP_SPRETEiJ_G0032049	Lsm1	100	96.992	Mus_spretus
ENSBTAG00000001612	LSM1	100	98.496	ENSMPUG00000009883	LSM1	100	98.496	Mustela_putorius_furo
ENSBTAG00000001612	LSM1	100	98.496	ENSMLUG00000003734	LSM1	100	98.496	Myotis_lucifugus
ENSBTAG00000001612	LSM1	100	98.496	ENSNGAG00000003753	Lsm1	100	98.496	Nannospalax_galili
ENSBTAG00000001612	LSM1	58	92.208	ENSNBRG00000017370	lsm1	66	92.208	Neolamprologus_brichardi
ENSBTAG00000001612	LSM1	100	99.248	ENSNLEG00000029390	LSM1	100	99.248	Nomascus_leucogenys
ENSBTAG00000001612	LSM1	100	96.992	ENSMEUG00000014077	LSM1	100	96.992	Notamacropus_eugenii
ENSBTAG00000001612	LSM1	88	94.872	ENSOPRG00000000333	LSM1	100	94.872	Ochotona_princeps
ENSBTAG00000001612	LSM1	100	99.248	ENSODEG00000004834	LSM1	100	99.248	Octodon_degus
ENSBTAG00000001612	LSM1	100	83.459	ENSONIG00000010782	lsm1	100	83.459	Oreochromis_niloticus
ENSBTAG00000001612	LSM1	100	96.241	ENSOANG00000003256	LSM1	100	96.241	Ornithorhynchus_anatinus
ENSBTAG00000001612	LSM1	100	99.248	ENSOCUG00000015399	LSM1	100	99.248	Oryctolagus_cuniculus
ENSBTAG00000001612	LSM1	100	84.962	ENSORLG00000030288	lsm1	100	84.962	Oryzias_latipes
ENSBTAG00000001612	LSM1	100	84.962	ENSORLG00020003941	lsm1	100	84.962	Oryzias_latipes_hni
ENSBTAG00000001612	LSM1	100	83.459	ENSORLG00020006213	-	86	83.459	Oryzias_latipes_hni
ENSBTAG00000001612	LSM1	100	84.962	ENSORLG00015018350	lsm1	100	84.962	Oryzias_latipes_hsok
ENSBTAG00000001612	LSM1	100	83.459	ENSOMEG00000012454	lsm1	100	83.459	Oryzias_melastigma
ENSBTAG00000001612	LSM1	100	99.248	ENSOGAG00000015161	LSM1	100	99.248	Otolemur_garnettii
ENSBTAG00000001612	LSM1	100	99.248	ENSOARG00000001317	LSM1	100	99.248	Ovis_aries
ENSBTAG00000001612	LSM1	100	99.248	ENSPPAG00000032279	LSM1	100	99.248	Pan_paniscus
ENSBTAG00000001612	LSM1	100	99.248	ENSPPRG00000014172	-	100	99.248	Panthera_pardus
ENSBTAG00000001612	LSM1	100	99.248	ENSPTIG00000010289	LSM1	100	99.248	Panthera_tigris_altaica
ENSBTAG00000001612	LSM1	100	99.248	ENSPTRG00000020169	LSM1	100	99.248	Pan_troglodytes
ENSBTAG00000001612	LSM1	100	99.248	ENSPANG00000008814	LSM1	100	99.248	Papio_anubis
ENSBTAG00000001612	LSM1	100	89.474	ENSPKIG00000001839	lsm1	100	89.474	Paramormyrops_kingsleyae
ENSBTAG00000001612	LSM1	100	81.955	ENSPKIG00000019409	LSM1	99	81.955	Paramormyrops_kingsleyae
ENSBTAG00000001612	LSM1	98	88.462	ENSPSIG00000012563	LSM1	99	88.462	Pelodiscus_sinensis
ENSBTAG00000001612	LSM1	58	92.208	ENSPMGG00000022999	lsm1	73	92.208	Periophthalmus_magnuspinnatus
ENSBTAG00000001612	LSM1	85	81.416	ENSPMAG00000002671	lsm1	100	81.416	Petromyzon_marinus
ENSBTAG00000001612	LSM1	100	95.489	ENSPCIG00000008880	LSM1	100	95.489	Phascolarctos_cinereus
ENSBTAG00000001612	LSM1	100	82.707	ENSPFOG00000016029	lsm1	100	82.707	Poecilia_formosa
ENSBTAG00000001612	LSM1	100	82.707	ENSPLAG00000007879	lsm1	100	82.707	Poecilia_latipinna
ENSBTAG00000001612	LSM1	100	82.707	ENSPMEG00000023550	lsm1	100	82.707	Poecilia_mexicana
ENSBTAG00000001612	LSM1	100	82.707	ENSPREG00000009574	lsm1	100	82.707	Poecilia_reticulata
ENSBTAG00000001612	LSM1	100	99.248	ENSPPYG00000018521	LSM1	100	99.248	Pongo_abelii
ENSBTAG00000001612	LSM1	100	99.248	ENSPCOG00000020901	-	100	99.248	Propithecus_coquereli
ENSBTAG00000001612	LSM1	100	99.248	ENSPVAG00000006016	LSM1	100	99.248	Pteropus_vampyrus
ENSBTAG00000001612	LSM1	100	83.459	ENSPNYG00000018067	lsm1	100	83.459	Pundamilia_nyererei
ENSBTAG00000001612	LSM1	100	84.962	ENSPNAG00000013707	lsm1	100	84.962	Pygocentrus_nattereri
ENSBTAG00000001612	LSM1	100	96.992	ENSRNOG00000015375	Lsm1	100	96.992	Rattus_norvegicus
ENSBTAG00000001612	LSM1	100	99.248	ENSRBIG00000027449	LSM1	100	99.248	Rhinopithecus_bieti
ENSBTAG00000001612	LSM1	100	99.248	ENSRROG00000036074	LSM1	100	99.248	Rhinopithecus_roxellana
ENSBTAG00000001612	LSM1	100	96.992	ENSSHAG00000017260	LSM1	100	96.992	Sarcophilus_harrisii
ENSBTAG00000001612	LSM1	100	90.977	ENSSFOG00015019528	lsm1	100	90.977	Scleropages_formosus
ENSBTAG00000001612	LSM1	100	83.459	ENSSMAG00000004930	lsm1	100	83.459	Scophthalmus_maximus
ENSBTAG00000001612	LSM1	100	83.459	ENSSDUG00000021823	lsm1	100	83.459	Seriola_dumerili
ENSBTAG00000001612	LSM1	100	83.459	ENSSLDG00000012154	lsm1	100	83.459	Seriola_lalandi_dorsalis
ENSBTAG00000001612	LSM1	100	94.737	ENSSPUG00000014878	LSM1	100	94.737	Sphenodon_punctatus
ENSBTAG00000001612	LSM1	100	84.211	ENSSPAG00000020548	lsm1	100	84.211	Stegastes_partitus
ENSBTAG00000001612	LSM1	100	97.744	ENSSSCG00000039058	LSM1	100	97.744	Sus_scrofa
ENSBTAG00000001612	LSM1	100	93.985	ENSTGUG00000004793	LSM1	100	93.985	Taeniopygia_guttata
ENSBTAG00000001612	LSM1	100	85.714	ENSTRUG00000025239	lsm1	100	85.714	Takifugu_rubripes
ENSBTAG00000001612	LSM1	100	85.714	ENSTNIG00000004055	lsm1	100	85.714	Tetraodon_nigroviridis
ENSBTAG00000001612	LSM1	88	96.581	ENSTBEG00000015884	LSM1	100	96.581	Tupaia_belangeri
ENSBTAG00000001612	LSM1	100	99.248	ENSTTRG00000004482	LSM1	100	99.248	Tursiops_truncatus
ENSBTAG00000001612	LSM1	100	99.248	ENSUAMG00000004103	LSM1	100	99.248	Ursus_americanus
ENSBTAG00000001612	LSM1	100	99.248	ENSUMAG00000009132	LSM1	100	99.248	Ursus_maritimus
ENSBTAG00000001612	LSM1	58	98.701	ENSVPAG00000011593	LSM1	100	98.701	Vicugna_pacos
ENSBTAG00000001612	LSM1	65	69.767	ENSVVUG00000014880	-	91	69.767	Vulpes_vulpes
ENSBTAG00000001612	LSM1	100	99.248	ENSVVUG00000020191	LSM1	100	99.248	Vulpes_vulpes
ENSBTAG00000001612	LSM1	100	91.971	ENSXETG00000009004	lsm1	100	91.971	Xenopus_tropicalis
ENSBTAG00000001612	LSM1	100	81.955	ENSXCOG00000015631	lsm1	100	81.955	Xiphophorus_couchianus
ENSBTAG00000001612	LSM1	100	81.955	ENSXMAG00000026637	lsm1	100	81.955	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005634	nucleus	-	IEA	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0019827	stem cell population maintenance	-	IEA	Process
GO:0045665	negative regulation of neuron differentiation	-	IEA	Process
GO:0071044	histone mRNA catabolic process	-	ISS	Process