EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSBTAG00000002090 (Gene tree)
Gene ID: 280875
Gene Symbol: CPSF4
Alias: -
Full Name: Bos taurus cleavage and polyadenylation specific factor 4 (CPSF4)%2C mRNA.
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Minus strand
Length: 12270 bases
Position: chr25:36959456-36971725
Accession: NM_173942
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000002701	zf-CCCH	PF00642.24	2.2e-20	1	2
ENSBTAP00000002701	zf-CCCH	PF00642.24	2.2e-20	2	2
ENSBTAP00000065990	zf-CCHC	PF00098.23	2.1e-06	1	1
ENSBTAP00000002701	zf-CCHC	PF00098.23	4.8e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000087053	-	1759	-	ENSBTAP00000065990	263 (aa)	-	-
ENSBTAT00000002701	-	1666	XM_005225004	ENSBTAP00000002701	243 (aa)	XP_005225061	O19137

Gene Model

Click here to download ENSBTAG00000002090's gene model file

Pathways

Pathway ID	Pathway Name	Source
bta03015	mRNA surveillance pathway	KEGG
bta05164	Influenza A	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000002090's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000002090	CPSF4	100	98.770	ENSG00000160917	CPSF4	100	100.000	Homo_sapiens
ENSBTAG00000002090	CPSF4	64	69.492	ENSAPOG00000004921	cpsf4	100	69.492	Acanthochromis_polyacanthus
ENSBTAG00000002090	CPSF4	100	89.591	ENSAMEG00000006252	CPSF4	100	89.591	Ailuropoda_melanoleuca
ENSBTAG00000002090	CPSF4	100	86.831	ENSACIG00000009248	cpsf4	100	86.831	Amphilophus_citrinellus
ENSBTAG00000002090	CPSF4	100	81.509	ENSAOCG00000019616	cpsf4	100	81.509	Amphiprion_ocellaris
ENSBTAG00000002090	CPSF4	100	81.509	ENSAPEG00000011679	cpsf4	100	81.509	Amphiprion_percula
ENSBTAG00000002090	CPSF4	100	84.739	ENSATEG00000007010	cpsf4	100	85.020	Anabas_testudineus
ENSBTAG00000002090	CPSF4	100	82.900	ENSACAG00000012941	CPSF4	89	82.156	Anolis_carolinensis
ENSBTAG00000002090	CPSF4	100	89.591	ENSANAG00000021360	CPSF4	100	89.591	Aotus_nancymaae
ENSBTAG00000002090	CPSF4	100	80.658	ENSACLG00000010374	cpsf4	100	79.245	Astatotilapia_calliptera
ENSBTAG00000002090	CPSF4	100	80.370	ENSAMXG00000031647	cpsf4	100	80.741	Astyanax_mexicanus
ENSBTAG00000002090	CPSF4	100	89.591	ENSCJAG00000015826	CPSF4	100	89.591	Callithrix_jacchus
ENSBTAG00000002090	CPSF4	100	89.219	ENSCAFG00000015036	CPSF4	100	89.219	Canis_familiaris
ENSBTAG00000002090	CPSF4	100	80.297	ENSCAFG00020014462	CPSF4	100	82.900	Canis_lupus_dingo
ENSBTAG00000002090	CPSF4	100	90.335	ENSCHIG00000014313	CPSF4	100	90.335	Capra_hircus
ENSBTAG00000002090	CPSF4	100	89.796	ENSTSYG00000014604	-	100	89.796	Carlito_syrichta
ENSBTAG00000002090	CPSF4	100	98.770	ENSTSYG00000005712	-	100	98.770	Carlito_syrichta
ENSBTAG00000002090	CPSF4	88	91.667	ENSTSYG00000008195	-	99	91.111	Carlito_syrichta
ENSBTAG00000002090	CPSF4	79	87.156	ENSCAPG00000013881	CPSF4	87	87.156	Cavia_aperea
ENSBTAG00000002090	CPSF4	100	98.770	ENSCPOG00000001783	CPSF4	100	98.770	Cavia_porcellus
ENSBTAG00000002090	CPSF4	100	89.591	ENSCCAG00000028291	CPSF4	100	89.591	Cebus_capucinus
ENSBTAG00000002090	CPSF4	100	91.770	ENSCATG00000038440	CPSF4	100	89.591	Cercocebus_atys
ENSBTAG00000002090	CPSF4	100	89.219	ENSCLAG00000007050	CPSF4	100	89.219	Chinchilla_lanigera
ENSBTAG00000002090	CPSF4	100	89.591	ENSCSAG00000017795	CPSF4	100	89.591	Chlorocebus_sabaeus
ENSBTAG00000002090	CPSF4	68	80.723	ENSCPBG00000010269	-	100	80.723	Chrysemys_picta_bellii
ENSBTAG00000002090	CPSF4	78	81.481	ENSCPBG00000020869	CPSF4	100	80.556	Chrysemys_picta_bellii
ENSBTAG00000002090	CPSF4	96	56.299	ENSCING00000021080	-	97	55.906	Ciona_intestinalis
ENSBTAG00000002090	CPSF4	96	53.004	ENSCSAVG00000011469	-	60	72.254	Ciona_savignyi
ENSBTAG00000002090	CPSF4	100	90.947	ENSCANG00000019384	CPSF4	100	89.591	Colobus_angolensis_palliatus
ENSBTAG00000002090	CPSF4	100	98.770	ENSCGRG00001024184	Cpsf4	100	98.770	Cricetulus_griseus_chok1gshd
ENSBTAG00000002090	CPSF4	100	89.591	ENSCGRG00000013892	Cpsf4	100	89.591	Cricetulus_griseus_crigri
ENSBTAG00000002090	CPSF4	100	80.000	ENSCSEG00000019055	cpsf4	100	80.000	Cynoglossus_semilaevis
ENSBTAG00000002090	CPSF4	100	79.623	ENSCVAG00000016528	cpsf4	100	79.623	Cyprinodon_variegatus
ENSBTAG00000002090	CPSF4	100	78.967	ENSDARG00000020217	cpsf4	100	79.336	Danio_rerio
ENSBTAG00000002090	CPSF4	100	89.963	ENSDNOG00000006344	CPSF4	100	89.963	Dasypus_novemcinctus
ENSBTAG00000002090	CPSF4	79	86.636	ENSDORG00000000742	Cpsf4	100	86.636	Dipodomys_ordii
ENSBTAG00000002090	CPSF4	100	52.740	FBgn0015621	Clp	99	53.082	Drosophila_melanogaster
ENSBTAG00000002090	CPSF4	77	100.000	ENSETEG00000002608	CPSF4	70	100.000	Echinops_telfairi
ENSBTAG00000002090	CPSF4	99	71.429	ENSEBUG00000012552	cpsf4	98	70.040	Eptatretus_burgeri
ENSBTAG00000002090	CPSF4	100	98.770	ENSEASG00005002487	CPSF4	100	98.770	Equus_asinus_asinus
ENSBTAG00000002090	CPSF4	100	89.591	ENSECAG00000007525	CPSF4	100	89.591	Equus_caballus
ENSBTAG00000002090	CPSF4	59	100.000	ENSEEUG00000002158	CPSF4	73	100.000	Erinaceus_europaeus
ENSBTAG00000002090	CPSF4	100	78.676	ENSELUG00000011481	cpsf4	100	78.676	Esox_lucius
ENSBTAG00000002090	CPSF4	100	89.591	ENSFCAG00000015070	CPSF4	100	89.591	Felis_catus
ENSBTAG00000002090	CPSF4	68	56.977	ENSFALG00000012906	-	100	56.977	Ficedula_albicollis
ENSBTAG00000002090	CPSF4	100	95.062	ENSFALG00000013799	CPSF4	100	95.062	Ficedula_albicollis
ENSBTAG00000002090	CPSF4	89	87.654	ENSFDAG00000014092	CPSF4	100	87.654	Fukomys_damarensis
ENSBTAG00000002090	CPSF4	100	79.623	ENSFHEG00000010880	cpsf4	100	79.623	Fundulus_heteroclitus
ENSBTAG00000002090	CPSF4	100	79.845	ENSGMOG00000002330	cpsf4	100	77.519	Gadus_morhua
ENSBTAG00000002090	CPSF4	100	95.062	ENSGALG00000004714	CPSF4	100	95.062	Gallus_gallus
ENSBTAG00000002090	CPSF4	65	39.326	ENSGALG00000004441	-	98	37.640	Gallus_gallus
ENSBTAG00000002090	CPSF4	100	79.167	ENSGAFG00000010580	cpsf4	100	79.545	Gambusia_affinis
ENSBTAG00000002090	CPSF4	100	81.890	ENSGACG00000007792	cpsf4	100	81.890	Gasterosteus_aculeatus
ENSBTAG00000002090	CPSF4	100	84.387	ENSGAGG00000021835	CPSF4	100	83.643	Gopherus_agassizii
ENSBTAG00000002090	CPSF4	75	76.923	ENSGAGG00000020579	-	92	81.212	Gopherus_agassizii
ENSBTAG00000002090	CPSF4	100	89.591	ENSGGOG00000015131	CPSF4	100	89.591	Gorilla_gorilla
ENSBTAG00000002090	CPSF4	100	79.245	ENSHBUG00000013699	cpsf4	100	79.245	Haplochromis_burtoni
ENSBTAG00000002090	CPSF4	100	88.561	ENSHGLG00000017150	CPSF4	100	88.561	Heterocephalus_glaber_female
ENSBTAG00000002090	CPSF4	100	62.140	ENSHGLG00100017302	-	100	60.082	Heterocephalus_glaber_male
ENSBTAG00000002090	CPSF4	86	85.169	ENSHGLG00100009215	-	100	85.169	Heterocephalus_glaber_male
ENSBTAG00000002090	CPSF4	100	79.245	ENSHCOG00000004397	cpsf4	100	79.245	Hippocampus_comes
ENSBTAG00000002090	CPSF4	100	78.967	ENSIPUG00000017147	cpsf4	100	79.705	Ictalurus_punctatus
ENSBTAG00000002090	CPSF4	100	99.177	ENSSTOG00000001688	CPSF4	100	99.177	Ictidomys_tridecemlineatus
ENSBTAG00000002090	CPSF4	100	89.219	ENSJJAG00000019426	Cpsf4	100	89.219	Jaculus_jaculus
ENSBTAG00000002090	CPSF4	100	78.868	ENSKMAG00000015642	cpsf4	100	78.868	Kryptolebias_marmoratus
ENSBTAG00000002090	CPSF4	100	82.963	ENSLACG00000010938	CPSF4	100	82.963	Latimeria_chalumnae
ENSBTAG00000002090	CPSF4	100	67.073	ENSLACG00000018470	-	100	64.453	Latimeria_chalumnae
ENSBTAG00000002090	CPSF4	100	80.669	ENSLOCG00000004814	cpsf4	100	80.297	Lepisosteus_oculatus
ENSBTAG00000002090	CPSF4	100	89.219	ENSLAFG00000000159	CPSF4	100	89.219	Loxodonta_africana
ENSBTAG00000002090	CPSF4	100	90.947	ENSMFAG00000001462	CPSF4	100	98.429	Macaca_fascicularis
ENSBTAG00000002090	CPSF4	100	89.591	ENSMMUG00000019191	CPSF4	100	89.591	Macaca_mulatta
ENSBTAG00000002090	CPSF4	100	90.947	ENSMNEG00000032306	CPSF4	100	89.591	Macaca_nemestrina
ENSBTAG00000002090	CPSF4	100	91.770	ENSMLEG00000034721	CPSF4	100	89.591	Mandrillus_leucophaeus
ENSBTAG00000002090	CPSF4	100	80.075	ENSMAMG00000006244	cpsf4	100	80.524	Mastacembelus_armatus
ENSBTAG00000002090	CPSF4	100	79.245	ENSMZEG00005007515	cpsf4	100	79.245	Maylandia_zebra
ENSBTAG00000002090	CPSF4	86	94.737	ENSMGAG00000004235	CPSF4	100	94.737	Meleagris_gallopavo
ENSBTAG00000002090	CPSF4	100	89.591	ENSMAUG00000021253	Cpsf4	100	89.591	Mesocricetus_auratus
ENSBTAG00000002090	CPSF4	100	89.219	ENSMICG00000017429	CPSF4	100	89.219	Microcebus_murinus
ENSBTAG00000002090	CPSF4	100	89.591	ENSMOCG00000014901	Cpsf4	100	89.591	Microtus_ochrogaster
ENSBTAG00000002090	CPSF4	100	80.075	ENSMMOG00000001813	cpsf4	95	87.879	Mola_mola
ENSBTAG00000002090	CPSF4	100	87.732	ENSMODG00000001367	CPSF4	100	87.732	Monodelphis_domestica
ENSBTAG00000002090	CPSF4	100	80.524	ENSMALG00000012611	cpsf4	100	80.524	Monopterus_albus
ENSBTAG00000002090	CPSF4	100	99.177	MGP_CAROLIEiJ_G0028012	Cpsf4	100	99.177	Mus_caroli
ENSBTAG00000002090	CPSF4	100	99.177	ENSMUSG00000029625	Cpsf4	100	99.177	Mus_musculus
ENSBTAG00000002090	CPSF4	100	99.177	MGP_PahariEiJ_G0024581	Cpsf4	100	99.177	Mus_pahari
ENSBTAG00000002090	CPSF4	100	98.765	MGP_SPRETEiJ_G0029013	Cpsf4	100	98.765	Mus_spretus
ENSBTAG00000002090	CPSF4	100	89.591	ENSMPUG00000016508	CPSF4	100	89.591	Mustela_putorius_furo
ENSBTAG00000002090	CPSF4	86	98.086	ENSMLUG00000010980	CPSF4	100	98.086	Myotis_lucifugus
ENSBTAG00000002090	CPSF4	100	89.219	ENSNGAG00000001567	Cpsf4	100	89.219	Nannospalax_galili
ENSBTAG00000002090	CPSF4	90	78.423	ENSNBRG00000003943	cpsf4	98	78.423	Neolamprologus_brichardi
ENSBTAG00000002090	CPSF4	100	98.770	ENSNLEG00000011074	CPSF4	100	98.770	Nomascus_leucogenys
ENSBTAG00000002090	CPSF4	100	87.732	ENSMEUG00000006955	CPSF4	100	87.732	Notamacropus_eugenii
ENSBTAG00000002090	CPSF4	100	88.848	ENSOPRG00000013663	CPSF4	100	88.848	Ochotona_princeps
ENSBTAG00000002090	CPSF4	100	89.591	ENSODEG00000011181	-	100	89.591	Octodon_degus
ENSBTAG00000002090	CPSF4	100	72.797	ENSODEG00000009779	-	100	72.797	Octodon_degus
ENSBTAG00000002090	CPSF4	98	83.333	ENSODEG00000018283	-	91	83.333	Octodon_degus
ENSBTAG00000002090	CPSF4	100	79.245	ENSONIG00000008495	cpsf4	100	79.245	Oreochromis_niloticus
ENSBTAG00000002090	CPSF4	100	53.237	ENSOANG00000009568	-	100	51.799	Ornithorhynchus_anatinus
ENSBTAG00000002090	CPSF4	86	85.470	ENSOANG00000007729	CPSF4	100	82.906	Ornithorhynchus_anatinus
ENSBTAG00000002090	CPSF4	100	88.848	ENSOCUG00000002437	CPSF4	70	88.848	Oryctolagus_cuniculus
ENSBTAG00000002090	CPSF4	100	79.623	ENSORLG00000022798	cpsf4	100	79.623	Oryzias_latipes
ENSBTAG00000002090	CPSF4	100	79.623	ENSORLG00020008548	cpsf4	100	79.623	Oryzias_latipes_hni
ENSBTAG00000002090	CPSF4	100	79.245	ENSORLG00015019575	cpsf4	100	79.245	Oryzias_latipes_hsok
ENSBTAG00000002090	CPSF4	100	78.491	ENSOMEG00000005176	cpsf4	100	76.226	Oryzias_melastigma
ENSBTAG00000002090	CPSF4	100	89.219	ENSOGAG00000010884	CPSF4	100	89.219	Otolemur_garnettii
ENSBTAG00000002090	CPSF4	100	78.755	ENSOARG00000018668	CPSF4	100	77.656	Ovis_aries
ENSBTAG00000002090	CPSF4	100	89.219	ENSPPAG00000043355	CPSF4	100	89.219	Pan_paniscus
ENSBTAG00000002090	CPSF4	100	89.591	ENSPPRG00000003134	CPSF4	100	89.591	Panthera_pardus
ENSBTAG00000002090	CPSF4	89	88.017	ENSPTIG00000005604	CPSF4	90	88.017	Panthera_tigris_altaica
ENSBTAG00000002090	CPSF4	100	89.219	ENSPTRG00000019453	CPSF4	100	89.219	Pan_troglodytes
ENSBTAG00000002090	CPSF4	100	90.947	ENSPANG00000023123	CPSF4	100	89.591	Papio_anubis
ENSBTAG00000002090	CPSF4	100	80.292	ENSPKIG00000014278	cpsf4	100	80.292	Paramormyrops_kingsleyae
ENSBTAG00000002090	CPSF4	79	65.803	ENSPSIG00000018198	-	100	65.803	Pelodiscus_sinensis
ENSBTAG00000002090	CPSF4	78	81.019	ENSPSIG00000011229	CPSF4	100	80.093	Pelodiscus_sinensis
ENSBTAG00000002090	CPSF4	100	80.658	ENSPMGG00000017735	cpsf4	100	77.959	Periophthalmus_magnuspinnatus
ENSBTAG00000002090	CPSF4	100	89.591	ENSPEMG00000004508	Cpsf4	100	89.591	Peromyscus_maniculatus_bairdii
ENSBTAG00000002090	CPSF4	100	87.732	ENSPCIG00000024776	CPSF4	100	87.732	Phascolarctos_cinereus
ENSBTAG00000002090	CPSF4	100	79.167	ENSPFOG00000014912	cpsf4	100	79.545	Poecilia_formosa
ENSBTAG00000002090	CPSF4	100	78.455	ENSPLAG00000009599	cpsf4	100	78.455	Poecilia_latipinna
ENSBTAG00000002090	CPSF4	100	79.167	ENSPMEG00000009790	cpsf4	100	79.545	Poecilia_mexicana
ENSBTAG00000002090	CPSF4	100	78.409	ENSPREG00000018166	cpsf4	100	75.573	Poecilia_reticulata
ENSBTAG00000002090	CPSF4	86	87.179	ENSPPYG00000017378	CPSF4	100	87.179	Pongo_abelii
ENSBTAG00000002090	CPSF4	100	88.476	ENSPCAG00000001892	CPSF4	100	88.476	Procavia_capensis
ENSBTAG00000002090	CPSF4	100	89.591	ENSPCOG00000012771	CPSF4	100	89.591	Propithecus_coquereli
ENSBTAG00000002090	CPSF4	100	82.900	ENSPVAG00000007531	CPSF4	100	82.900	Pteropus_vampyrus
ENSBTAG00000002090	CPSF4	100	79.245	ENSPNYG00000018559	cpsf4	100	79.245	Pundamilia_nyererei
ENSBTAG00000002090	CPSF4	100	81.111	ENSPNAG00000003736	cpsf4	100	81.481	Pygocentrus_nattereri
ENSBTAG00000002090	CPSF4	100	99.177	ENSRNOG00000000985	Cpsf4	100	99.177	Rattus_norvegicus
ENSBTAG00000002090	CPSF4	86	88.034	ENSRBIG00000033886	CPSF4	100	88.034	Rhinopithecus_bieti
ENSBTAG00000002090	CPSF4	100	98.770	ENSRROG00000040431	CPSF4	100	98.770	Rhinopithecus_roxellana
ENSBTAG00000002090	CPSF4	100	89.591	ENSSBOG00000020493	CPSF4	100	98.429	Saimiri_boliviensis_boliviensis
ENSBTAG00000002090	CPSF4	100	87.732	ENSSHAG00000011533	CPSF4	100	87.732	Sarcophilus_harrisii
ENSBTAG00000002090	CPSF4	100	81.522	ENSSFOG00015007883	cpsf4	100	81.522	Scleropages_formosus
ENSBTAG00000002090	CPSF4	100	86.235	ENSSMAG00000006374	cpsf4	100	86.235	Scophthalmus_maximus
ENSBTAG00000002090	CPSF4	100	80.827	ENSSDUG00000018887	cpsf4	100	80.827	Seriola_dumerili
ENSBTAG00000002090	CPSF4	100	80.827	ENSSLDG00000019078	cpsf4	100	80.827	Seriola_lalandi_dorsalis
ENSBTAG00000002090	CPSF4	86	87.607	ENSSARG00000012416	CPSF4	100	87.607	Sorex_araneus
ENSBTAG00000002090	CPSF4	95	64.831	ENSSPUG00000014803	-	97	64.407	Sphenodon_punctatus
ENSBTAG00000002090	CPSF4	100	85.130	ENSSPUG00000003549	CPSF4	100	83.271	Sphenodon_punctatus
ENSBTAG00000002090	CPSF4	100	87.243	ENSSPAG00000006174	cpsf4	100	87.243	Stegastes_partitus
ENSBTAG00000002090	CPSF4	100	98.361	ENSSSCG00000026896	CPSF4	100	98.361	Sus_scrofa
ENSBTAG00000002090	CPSF4	100	93.878	ENSTGUG00000007552	CPSF4	100	93.878	Taeniopygia_guttata
ENSBTAG00000002090	CPSF4	100	78.707	ENSTRUG00000024220	cpsf4	100	78.707	Takifugu_rubripes
ENSBTAG00000002090	CPSF4	100	78.327	ENSTNIG00000006265	cpsf4	100	79.468	Tetraodon_nigroviridis
ENSBTAG00000002090	CPSF4	86	76.068	ENSTBEG00000011406	CPSF4	100	75.214	Tupaia_belangeri
ENSBTAG00000002090	CPSF4	100	78.439	ENSTTRG00000003007	CPSF4	100	78.439	Tursiops_truncatus
ENSBTAG00000002090	CPSF4	91	99.095	ENSUAMG00000008051	CPSF4	85	99.095	Ursus_americanus
ENSBTAG00000002090	CPSF4	100	99.177	ENSUMAG00000009474	CPSF4	100	99.177	Ursus_maritimus
ENSBTAG00000002090	CPSF4	100	98.361	ENSVVUG00000008824	CPSF4	100	98.361	Vulpes_vulpes
ENSBTAG00000002090	CPSF4	99	61.278	ENSXETG00000004641	cpsf4l	99	60.150	Xenopus_tropicalis
ENSBTAG00000002090	CPSF4	100	79.211	ENSXETG00000009892	cpsf4	100	80.645	Xenopus_tropicalis
ENSBTAG00000002090	CPSF4	100	78.788	ENSXCOG00000016040	cpsf4	100	79.167	Xiphophorus_couchianus
ENSBTAG00000002090	CPSF4	100	79.167	ENSXMAG00000024670	cpsf4	100	79.545	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	-	IEA	Function
GO:0005515	protein binding	22617423.	IPI	Function
GO:0005847	mRNA cleavage and polyadenylation specificity factor complex	-	ISS	Component
GO:0008270	zinc ion binding	-	IEA	Function