EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSBTAG00000002292 (Gene tree)
Gene ID: 535439
Gene Symbol: SMARCA1
Alias: -
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 1
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Minus strand
Length: 73516 bases
Position: chrX:13491040-13564555
Accession: 34985
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000002973	ResIII	PF04851.15	1e-11	1	1
ENSBTAP00000061286	ResIII	PF04851.15	1.1e-11	1	1
ENSBTAP00000002973	DEAD	PF00270.29	1.9e-06	1	1
ENSBTAP00000061286	DEAD	PF00270.29	2.1e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000002973	-	3153	-	ENSBTAP00000002973	1051 (aa)	-	F1N166
ENSBTAT00000082702	-	3499	-	ENSBTAP00000061286	1093 (aa)	-	-

Gene Model

Click here to download ENSBTAG00000002292's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000002292's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSBTAG00000002292	SMARCA1	55	41.794	ENSBTAG00000020831	CHD1L	61	42.660
ENSBTAG00000002292	SMARCA1	51	43.649	ENSBTAG00000017776	CHD2	65	44.607
ENSBTAG00000002292	SMARCA1	95	83.216	ENSBTAG00000003399	SMARCA5	93	85.949
ENSBTAG00000002292	SMARCA1	51	46.245	ENSBTAG00000005979	HELLS	80	48.207
ENSBTAG00000002292	SMARCA1	50	31.849	ENSBTAG00000000632	RAD54B	60	32.517

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000002292	SMARCA1	100	97.431	ENSG00000102038	SMARCA1	99	97.450	Homo_sapiens
ENSBTAG00000002292	SMARCA1	90	83.667	ENSAPOG00000016035	smarca5	98	84.251	Acanthochromis_polyacanthus
ENSBTAG00000002292	SMARCA1	99	96.667	ENSAMEG00000015218	SMARCA1	99	96.359	Ailuropoda_melanoleuca
ENSBTAG00000002292	SMARCA1	83	84.361	ENSACIG00000016982	smarca5	99	84.382	Amphilophus_citrinellus
ENSBTAG00000002292	SMARCA1	90	83.667	ENSAOCG00000015578	smarca5	95	82.977	Amphiprion_ocellaris
ENSBTAG00000002292	SMARCA1	90	83.667	ENSAPEG00000011117	smarca5	99	84.323	Amphiprion_percula
ENSBTAG00000002292	SMARCA1	91	83.351	ENSATEG00000012894	smarca5	95	82.977	Anabas_testudineus
ENSBTAG00000002292	SMARCA1	91	92.138	ENSAPLG00000013149	SMARCA1	99	92.449	Anas_platyrhynchos
ENSBTAG00000002292	SMARCA1	97	88.639	ENSACAG00000011376	SMARCA1	95	91.174	Anolis_carolinensis
ENSBTAG00000002292	SMARCA1	98	92.039	ENSANAG00000023098	SMARCA1	99	91.690	Aotus_nancymaae
ENSBTAG00000002292	SMARCA1	95	80.681	ENSACLG00000025356	smarca5	95	83.384	Astatotilapia_calliptera
ENSBTAG00000002292	SMARCA1	86	87.789	ENSAMXG00000011227	smarca1	99	89.697	Astyanax_mexicanus
ENSBTAG00000002292	SMARCA1	96	80.396	ENSAMXG00000005709	smarca5	93	84.004	Astyanax_mexicanus
ENSBTAG00000002292	SMARCA1	92	63.099	WBGene00002169	isw-1	97	62.802	Caenorhabditis_elegans
ENSBTAG00000002292	SMARCA1	99	97.048	ENSCJAG00000002868	SMARCA1	99	97.167	Callithrix_jacchus
ENSBTAG00000002292	SMARCA1	99	87.595	ENSCAFG00000018673	SMARCA1	99	88.325	Canis_familiaris
ENSBTAG00000002292	SMARCA1	99	96.952	ENSCAFG00020001751	SMARCA1	99	98.017	Canis_lupus_dingo
ENSBTAG00000002292	SMARCA1	100	99.810	ENSCHIG00000009837	SMARCA1	99	99.810	Capra_hircus
ENSBTAG00000002292	SMARCA1	96	96.127	ENSTSYG00000004240	SMARCA1	98	97.149	Carlito_syrichta
ENSBTAG00000002292	SMARCA1	96	96.545	ENSCPOG00000013601	SMARCA1	99	94.862	Cavia_porcellus
ENSBTAG00000002292	SMARCA1	98	93.981	ENSCCAG00000030817	SMARCA1	99	93.579	Cebus_capucinus
ENSBTAG00000002292	SMARCA1	99	97.429	ENSCATG00000015921	SMARCA1	99	97.495	Cercocebus_atys
ENSBTAG00000002292	SMARCA1	100	96.099	ENSCLAG00000002171	SMARCA1	99	96.099	Chinchilla_lanigera
ENSBTAG00000002292	SMARCA1	99	96.286	ENSCSAG00000008460	SMARCA1	99	97.356	Chlorocebus_sabaeus
ENSBTAG00000002292	SMARCA1	94	91.405	ENSCPBG00000001146	SMARCA1	94	92.377	Chrysemys_picta_bellii
ENSBTAG00000002292	SMARCA1	92	73.511	ENSCING00000004110	swi/snf	98	72.984	Ciona_intestinalis
ENSBTAG00000002292	SMARCA1	91	73.514	ENSCSAVG00000004620	-	100	74.165	Ciona_savignyi
ENSBTAG00000002292	SMARCA1	99	97.333	ENSCANG00000007183	SMARCA1	99	97.356	Colobus_angolensis_palliatus
ENSBTAG00000002292	SMARCA1	100	94.196	ENSCGRG00001010776	Smarca1	99	93.957	Cricetulus_griseus_chok1gshd
ENSBTAG00000002292	SMARCA1	95	95.482	ENSCGRG00000015301	Smarca1	98	95.956	Cricetulus_griseus_crigri
ENSBTAG00000002292	SMARCA1	92	83.247	ENSCSEG00000000328	smarca5	95	82.927	Cynoglossus_semilaevis
ENSBTAG00000002292	SMARCA1	91	83.246	ENSCVAG00000008668	smarca5	99	83.867	Cyprinodon_variegatus
ENSBTAG00000002292	SMARCA1	93	84.791	ENSDARG00000012776	smarca1	98	85.094	Danio_rerio
ENSBTAG00000002292	SMARCA1	95	80.060	ENSDARG00000052348	smarca5	94	83.591	Danio_rerio
ENSBTAG00000002292	SMARCA1	100	94.101	ENSDNOG00000004315	SMARCA1	99	94.798	Dasypus_novemcinctus
ENSBTAG00000002292	SMARCA1	100	94.386	ENSDORG00000009270	Smarca1	99	94.990	Dipodomys_ordii
ENSBTAG00000002292	SMARCA1	91	73.133	FBgn0011604	Iswi	98	72.233	Drosophila_melanogaster
ENSBTAG00000002292	SMARCA1	79	93.750	ENSETEG00000017426	SMARCA1	85	93.750	Echinops_telfairi
ENSBTAG00000002292	SMARCA1	90	81.674	ENSEBUG00000001239	smarca5	96	81.128	Eptatretus_burgeri
ENSBTAG00000002292	SMARCA1	96	94.831	ENSEASG00005008218	SMARCA1	99	94.831	Equus_asinus_asinus
ENSBTAG00000002292	SMARCA1	99	97.333	ENSECAG00000012106	SMARCA1	99	98.395	Equus_caballus
ENSBTAG00000002292	SMARCA1	77	97.682	ENSEEUG00000014927	SMARCA1	84	97.682	Erinaceus_europaeus
ENSBTAG00000002292	SMARCA1	92	86.256	ENSELUG00000010515	smarca1	98	86.468	Esox_lucius
ENSBTAG00000002292	SMARCA1	99	98.000	ENSFCAG00000018496	SMARCA1	99	97.923	Felis_catus
ENSBTAG00000002292	SMARCA1	88	91.351	ENSFALG00000000209	SMARCA1	98	92.654	Ficedula_albicollis
ENSBTAG00000002292	SMARCA1	94	97.782	ENSFDAG00000009818	SMARCA1	97	97.782	Fukomys_damarensis
ENSBTAG00000002292	SMARCA1	96	79.901	ENSFHEG00000007687	smarca5	94	83.180	Fundulus_heteroclitus
ENSBTAG00000002292	SMARCA1	95	89.741	ENSGALG00000008431	SMARCA1	96	92.402	Gallus_gallus
ENSBTAG00000002292	SMARCA1	91	83.455	ENSGAFG00000017731	smarca5	95	83.180	Gambusia_affinis
ENSBTAG00000002292	SMARCA1	91	91.979	ENSGAGG00000023575	SMARCA1	99	92.887	Gopherus_agassizii
ENSBTAG00000002292	SMARCA1	71	96.000	ENSGGOG00000012841	-	95	96.000	Gorilla_gorilla
ENSBTAG00000002292	SMARCA1	100	96.004	ENSHGLG00000003080	SMARCA1	99	96.004	Heterocephalus_glaber_female
ENSBTAG00000002292	SMARCA1	93	96.633	ENSHGLG00100001102	SMARCA1	99	96.096	Heterocephalus_glaber_male
ENSBTAG00000002292	SMARCA1	90	83.491	ENSHCOG00000005458	smarca5	95	83.078	Hippocampus_comes
ENSBTAG00000002292	SMARCA1	95	85.030	ENSIPUG00000016905	Smarca1	99	86.823	Ictalurus_punctatus
ENSBTAG00000002292	SMARCA1	94	81.320	ENSIPUG00000005229	SMARCA5	97	82.653	Ictalurus_punctatus
ENSBTAG00000002292	SMARCA1	100	96.575	ENSSTOG00000014524	SMARCA1	99	96.978	Ictidomys_tridecemlineatus
ENSBTAG00000002292	SMARCA1	100	93.815	ENSJJAG00000002593	Smarca1	99	94.701	Jaculus_jaculus
ENSBTAG00000002292	SMARCA1	90	84.017	ENSKMAG00000003777	smarca5	95	83.588	Kryptolebias_marmoratus
ENSBTAG00000002292	SMARCA1	90	82.609	ENSLBEG00000013295	SMARCA1	100	84.829	Labrus_bergylta
ENSBTAG00000002292	SMARCA1	92	82.555	ENSLBEG00000018112	smarca5	95	82.622	Labrus_bergylta
ENSBTAG00000002292	SMARCA1	95	88.224	ENSLACG00000016697	SMARCA1	98	89.859	Latimeria_chalumnae
ENSBTAG00000002292	SMARCA1	92	88.648	ENSLOCG00000014591	smarca1	97	88.520	Lepisosteus_oculatus
ENSBTAG00000002292	SMARCA1	94	94.874	ENSLAFG00000000896	SMARCA1	99	96.016	Loxodonta_africana
ENSBTAG00000002292	SMARCA1	99	97.429	ENSMFAG00000002117	SMARCA1	99	97.495	Macaca_fascicularis
ENSBTAG00000002292	SMARCA1	99	97.429	ENSMMUG00000008818	SMARCA1	99	98.115	Macaca_mulatta
ENSBTAG00000002292	SMARCA1	99	97.429	ENSMNEG00000041768	SMARCA1	99	97.495	Macaca_nemestrina
ENSBTAG00000002292	SMARCA1	99	97.333	ENSMLEG00000043198	SMARCA1	99	97.356	Mandrillus_leucophaeus
ENSBTAG00000002292	SMARCA1	91	83.665	ENSMAMG00000014294	smarca5	94	83.384	Mastacembelus_armatus
ENSBTAG00000002292	SMARCA1	95	80.681	ENSMZEG00005009369	smarca5	95	83.384	Maylandia_zebra
ENSBTAG00000002292	SMARCA1	93	91.487	ENSMGAG00000007042	SMARCA1	99	90.684	Meleagris_gallopavo
ENSBTAG00000002292	SMARCA1	100	95.433	ENSMAUG00000008133	Smarca1	99	95.147	Mesocricetus_auratus
ENSBTAG00000002292	SMARCA1	99	97.048	ENSMICG00000015768	SMARCA1	99	96.978	Microcebus_murinus
ENSBTAG00000002292	SMARCA1	100	95.338	ENSMOCG00000009464	Smarca1	99	94.672	Microtus_ochrogaster
ENSBTAG00000002292	SMARCA1	91	81.250	ENSMMOG00000005547	smarca5	99	81.346	Mola_mola
ENSBTAG00000002292	SMARCA1	98	88.012	ENSMODG00000013187	-	96	90.973	Monodelphis_domestica
ENSBTAG00000002292	SMARCA1	92	82.256	ENSMALG00000002081	smarca5	97	82.869	Monopterus_albus
ENSBTAG00000002292	SMARCA1	100	93.655	MGP_CAROLIEiJ_G0033034	Smarca1	100	94.041	Mus_caroli
ENSBTAG00000002292	SMARCA1	100	93.655	ENSMUSG00000031099	Smarca1	100	94.041	Mus_musculus
ENSBTAG00000002292	SMARCA1	100	93.655	MGP_PahariEiJ_G0031579	Smarca1	100	94.171	Mus_pahari
ENSBTAG00000002292	SMARCA1	100	93.750	MGP_SPRETEiJ_G0034192	Smarca1	100	94.171	Mus_spretus
ENSBTAG00000002292	SMARCA1	99	97.810	ENSMPUG00000017423	SMARCA1	94	96.639	Mustela_putorius_furo
ENSBTAG00000002292	SMARCA1	98	94.192	ENSMLUG00000029614	SMARCA1	99	93.290	Myotis_lucifugus
ENSBTAG00000002292	SMARCA1	100	96.289	ENSNGAG00000006492	Smarca1	99	96.289	Nannospalax_galili
ENSBTAG00000002292	SMARCA1	91	83.770	ENSNBRG00000004463	smarca5	98	83.486	Neolamprologus_brichardi
ENSBTAG00000002292	SMARCA1	99	96.857	ENSNLEG00000015179	SMARCA1	98	97.449	Nomascus_leucogenys
ENSBTAG00000002292	SMARCA1	91	81.618	ENSMEUG00000008819	SMARCA1	99	81.598	Notamacropus_eugenii
ENSBTAG00000002292	SMARCA1	98	96.023	ENSODEG00000012163	SMARCA1	99	95.243	Octodon_degus
ENSBTAG00000002292	SMARCA1	95	80.781	ENSONIG00000009993	smarca5	95	83.486	Oreochromis_niloticus
ENSBTAG00000002292	SMARCA1	91	92.196	ENSOANG00000002862	SMARCA1	99	92.990	Ornithorhynchus_anatinus
ENSBTAG00000002292	SMARCA1	99	93.619	ENSOCUG00000001047	SMARCA1	99	94.429	Oryctolagus_cuniculus
ENSBTAG00000002292	SMARCA1	90	83.491	ENSORLG00000021998	smarca5	94	83.180	Oryzias_latipes
ENSBTAG00000002292	SMARCA1	90	83.596	ENSORLG00020017679	smarca5	96	82.477	Oryzias_latipes_hni
ENSBTAG00000002292	SMARCA1	90	83.491	ENSORLG00015017210	smarca5	95	83.078	Oryzias_latipes_hsok
ENSBTAG00000002292	SMARCA1	90	83.491	ENSOMEG00000000086	smarca5	95	83.078	Oryzias_melastigma
ENSBTAG00000002292	SMARCA1	100	97.241	ENSOGAG00000004399	SMARCA1	99	97.241	Otolemur_garnettii
ENSBTAG00000002292	SMARCA1	94	98.586	ENSOARG00000014638	SMARCA1	99	99.796	Ovis_aries
ENSBTAG00000002292	SMARCA1	99	97.429	ENSPPAG00000034647	SMARCA1	99	97.450	Pan_paniscus
ENSBTAG00000002292	SMARCA1	99	98.190	ENSPPRG00000008929	SMARCA1	99	98.111	Panthera_pardus
ENSBTAG00000002292	SMARCA1	94	96.985	ENSPTIG00000000915	SMARCA1	98	96.749	Panthera_tigris_altaica
ENSBTAG00000002292	SMARCA1	99	97.429	ENSPTRG00000049876	SMARCA1	99	97.495	Pan_troglodytes
ENSBTAG00000002292	SMARCA1	99	97.429	ENSPANG00000003871	SMARCA1	99	97.450	Papio_anubis
ENSBTAG00000002292	SMARCA1	91	85.819	ENSPKIG00000013411	smarca1	98	86.722	Paramormyrops_kingsleyae
ENSBTAG00000002292	SMARCA1	94	91.709	ENSPSIG00000010101	SMARCA1	99	92.577	Pelodiscus_sinensis
ENSBTAG00000002292	SMARCA1	100	96.384	ENSPEMG00000017503	Smarca1	99	96.384	Peromyscus_maniculatus_bairdii
ENSBTAG00000002292	SMARCA1	98	88.802	ENSPCIG00000015460	SMARCA1	98	91.675	Phascolarctos_cinereus
ENSBTAG00000002292	SMARCA1	90	83.701	ENSPFOG00000007649	smarca5	95	83.180	Poecilia_formosa
ENSBTAG00000002292	SMARCA1	90	83.701	ENSPLAG00000003363	smarca5	95	83.180	Poecilia_latipinna
ENSBTAG00000002292	SMARCA1	90	83.596	ENSPMEG00000019849	smarca5	95	83.078	Poecilia_mexicana
ENSBTAG00000002292	SMARCA1	90	83.596	ENSPREG00000023250	smarca5	95	83.078	Poecilia_reticulata
ENSBTAG00000002292	SMARCA1	99	93.714	ENSPPYG00000020703	SMARCA1	99	94.145	Pongo_abelii
ENSBTAG00000002292	SMARCA1	78	89.474	ENSPCOG00000020722	SMARCA1	94	92.511	Propithecus_coquereli
ENSBTAG00000002292	SMARCA1	94	97.686	ENSPVAG00000003805	SMARCA1	94	97.686	Pteropus_vampyrus
ENSBTAG00000002292	SMARCA1	56	84.384	ENSPNYG00000012299	smarca5	91	83.514	Pundamilia_nyererei
ENSBTAG00000002292	SMARCA1	99	94.286	ENSRNOG00000003762	Smarca1	99	95.279	Rattus_norvegicus
ENSBTAG00000002292	SMARCA1	99	97.333	ENSRROG00000034167	SMARCA1	99	97.356	Rhinopithecus_roxellana
ENSBTAG00000002292	SMARCA1	95	96.835	ENSSBOG00000020641	SMARCA1	99	98.466	Saimiri_boliviensis_boliviensis
ENSBTAG00000002292	SMARCA1	92	85.462	ENSSHAG00000013518	SMARCA1	99	86.200	Sarcophilus_harrisii
ENSBTAG00000002292	SMARCA1	96	85.149	ENSSFOG00015009043	smarca1	98	87.437	Scleropages_formosus
ENSBTAG00000002292	SMARCA1	92	82.609	ENSSFOG00015016794	smarca5	100	83.505	Scleropages_formosus
ENSBTAG00000002292	SMARCA1	91	82.396	ENSSMAG00000004801	smarca5	95	82.467	Scophthalmus_maximus
ENSBTAG00000002292	SMARCA1	91	83.141	ENSSDUG00000020690	smarca5	95	82.875	Seriola_dumerili
ENSBTAG00000002292	SMARCA1	91	83.141	ENSSLDG00000025190	smarca5	95	82.875	Seriola_lalandi_dorsalis
ENSBTAG00000002292	SMARCA1	87	90.476	ENSSARG00000000842	SMARCA1	92	90.476	Sorex_araneus
ENSBTAG00000002292	SMARCA1	97	88.759	ENSSPUG00000000590	SMARCA1	94	91.795	Sphenodon_punctatus
ENSBTAG00000002292	SMARCA1	91	83.351	ENSSPAG00000002894	smarca5	96	84.251	Stegastes_partitus
ENSBTAG00000002292	SMARCA1	100	97.146	ENSSSCG00000012649	SMARCA1	99	98.362	Sus_scrofa
ENSBTAG00000002292	SMARCA1	91	91.824	ENSTGUG00000003899	-	99	91.939	Taeniopygia_guttata
ENSBTAG00000002292	SMARCA1	91	83.246	ENSTRUG00000014094	smarca5	95	83.078	Takifugu_rubripes
ENSBTAG00000002292	SMARCA1	90	82.613	ENSTNIG00000017717	smarca5	94	82.161	Tetraodon_nigroviridis
ENSBTAG00000002292	SMARCA1	94	91.010	ENSTBEG00000014973	SMARCA1	99	91.010	Tupaia_belangeri
ENSBTAG00000002292	SMARCA1	94	95.833	ENSTTRG00000006168	SMARCA1	99	95.833	Tursiops_truncatus
ENSBTAG00000002292	SMARCA1	99	96.476	ENSUAMG00000020201	SMARCA1	99	97.545	Ursus_americanus
ENSBTAG00000002292	SMARCA1	94	94.320	ENSUMAG00000004073	SMARCA1	97	98.540	Ursus_maritimus
ENSBTAG00000002292	SMARCA1	79	99.676	ENSVPAG00000010492	-	86	99.676	Vicugna_pacos
ENSBTAG00000002292	SMARCA1	94	97.674	ENSVVUG00000008878	SMARCA1	99	99.060	Vulpes_vulpes
ENSBTAG00000002292	SMARCA1	92	89.267	ENSXETG00000001526	smarca1	99	89.347	Xenopus_tropicalis
ENSBTAG00000002292	SMARCA1	91	83.351	ENSXCOG00000011170	smarca5	97	83.078	Xiphophorus_couchianus
ENSBTAG00000002292	SMARCA1	91	83.351	ENSXMAG00000009678	smarca5	97	84.759	Xiphophorus_maculatus