EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSBTAG00000002720 (Gene tree)
Gene ID
507240
Gene Symbol
PRPF38A
Alias
-
Full Name
Bos taurus pre-mRNA processing factor 38A (PRPF38A)%2C mRNA.
Gene Type
protein_coding
Species
Bos_taurus
Status
putative
Strand
Minus strand
Length
21593 bases
Position
chr3:93934635-93956227
Accession
NM_001075307
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSBTAP00000065860PRP38PF03371.151.7e-6211
ENSBTAP00000003524PRP38PF03371.151.9e-6211
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSBTAT00000087041-891-ENSBTAP00000065860296 (aa)--
ENSBTAT00000003524-4549-ENSBTAP00000003524312 (aa)-Q0P5I6
Gene Model
Click here to download ENSBTAG00000002720's gene model file
Pathways
Pathway IDPathway NameSource
bta03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000002720's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSBTAG00000002720PRPF38A100100.000ENSG00000134748PRPF38A100100.000Homo_sapiens
ENSBTAG00000002720PRPF38A7588.688ENSAPOG00000011652prpf38a10081.789Acanthochromis_polyacanthus
ENSBTAG00000002720PRPF38A100100.000ENSAMEG00000009319PRPF38A100100.000Ailuropoda_melanoleuca
ENSBTAG00000002720PRPF38A7586.425ENSACIG00000012292prpf38a8381.853Amphilophus_citrinellus
ENSBTAG00000002720PRPF38A7588.688ENSAOCG00000018004prpf38a10081.789Amphiprion_ocellaris
ENSBTAG00000002720PRPF38A7588.688ENSAPEG00000021414prpf38a10081.789Amphiprion_percula
ENSBTAG00000002720PRPF38A7589.140ENSATEG00000004608prpf38a10081.789Anabas_testudineus
ENSBTAG00000002720PRPF38A7997.571ENSAPLG00000005827PRPF38A9997.571Anas_platyrhynchos
ENSBTAG00000002720PRPF38A10095.833ENSACAG00000008249PRPF38A10095.833Anolis_carolinensis
ENSBTAG00000002720PRPF38A10067.722ENSANAG00000029204-10062.342Aotus_nancymaae
ENSBTAG00000002720PRPF38A100100.000ENSANAG00000027839PRPF38A100100.000Aotus_nancymaae
ENSBTAG00000002720PRPF38A7586.425ENSACLG00000021595prpf38a10080.192Astatotilapia_calliptera
ENSBTAG00000002720PRPF38A10082.428ENSAMXG00000029274prpf38a10082.428Astyanax_mexicanus
ENSBTAG00000002720PRPF38A6662.564WBGene00008380prp-386761.574Caenorhabditis_elegans
ENSBTAG00000002720PRPF38A100100.000ENSCJAG00000021594PRPF38A100100.000Callithrix_jacchus
ENSBTAG00000002720PRPF38A100100.000ENSCAFG00000003740PRPF38A100100.000Canis_familiaris
ENSBTAG00000002720PRPF38A100100.000ENSCAFG00020010939PRPF38A100100.000Canis_lupus_dingo
ENSBTAG00000002720PRPF38A100100.000ENSCHIG00000024730PRPF38A100100.000Capra_hircus
ENSBTAG00000002720PRPF38A100100.000ENSTSYG00000009868-100100.000Carlito_syrichta
ENSBTAG00000002720PRPF38A8698.885ENSTSYG00000031994-9598.885Carlito_syrichta
ENSBTAG00000002720PRPF38A100100.000ENSCPOG00000005079PRPF38A100100.000Cavia_porcellus
ENSBTAG00000002720PRPF38A10099.679ENSCCAG00000026502PRPF38A10099.679Cebus_capucinus
ENSBTAG00000002720PRPF38A100100.000ENSCATG00000032296PRPF38A100100.000Cercocebus_atys
ENSBTAG00000002720PRPF38A10064.423ENSCATG00000044190-10063.141Cercocebus_atys
ENSBTAG00000002720PRPF38A100100.000ENSCLAG00000005816PRPF38A100100.000Chinchilla_lanigera
ENSBTAG00000002720PRPF38A7897.917ENSCHOG00000008388PRPF38A7797.917Choloepus_hoffmanni
ENSBTAG00000002720PRPF38A10098.077ENSCPBG00000014791PRPF38A10098.077Chrysemys_picta_bellii
ENSBTAG00000002720PRPF38A9562.414ENSCSAVG00000009580-7866.102Ciona_savignyi
ENSBTAG00000002720PRPF38A96100.000ENSCANG00000032608PRPF38A100100.000Colobus_angolensis_palliatus
ENSBTAG00000002720PRPF38A7884.848ENSCGRG00001002557-7884.848Cricetulus_griseus_chok1gshd
ENSBTAG00000002720PRPF38A10099.679ENSCGRG00001018502-10099.679Cricetulus_griseus_chok1gshd
ENSBTAG00000002720PRPF38A10099.679ENSCGRG00000014868Prpf38a10099.679Cricetulus_griseus_crigri
ENSBTAG00000002720PRPF38A7587.783ENSCSEG00000001269prpf38a8783.398Cynoglossus_semilaevis
ENSBTAG00000002720PRPF38A7590.498ENSCVAG00000012305prpf38a10082.428Cyprinodon_variegatus
ENSBTAG00000002720PRPF38A10081.789ENSDARG00000039213prpf38a10081.789Danio_rerio
ENSBTAG00000002720PRPF38A100100.000ENSDNOG00000042326PRPF38A100100.000Dasypus_novemcinctus
ENSBTAG00000002720PRPF38A8980.682ENSDORG00000023691-8979.923Dipodomys_ordii
ENSBTAG00000002720PRPF38A10086.538ENSDORG00000023857-10086.538Dipodomys_ordii
ENSBTAG00000002720PRPF38A8980.682ENSDORG00000025371-8979.923Dipodomys_ordii
ENSBTAG00000002720PRPF38A6775.635FBgn0050342Prp385776.596Drosophila_melanogaster
ENSBTAG00000002720PRPF38A8081.092ENSEBUG00000012588prpf38a8377.778Eptatretus_burgeri
ENSBTAG00000002720PRPF38A100100.000ENSEASG00005014427PRPF38A100100.000Equus_asinus_asinus
ENSBTAG00000002720PRPF38A100100.000ENSECAG00000022628PRPF38A100100.000Equus_caballus
ENSBTAG00000002720PRPF38A7586.878ENSELUG00000021094prpf38a10080.511Esox_lucius
ENSBTAG00000002720PRPF38A100100.000ENSFCAG00000002518PRPF38A100100.000Felis_catus
ENSBTAG00000002720PRPF38A8796.679ENSFALG00000005598-10096.679Ficedula_albicollis
ENSBTAG00000002720PRPF38A9984.887ENSFALG00000003612-8385.659Ficedula_albicollis
ENSBTAG00000002720PRPF38A10099.679ENSFDAG00000011287PRPF38A10099.679Fukomys_damarensis
ENSBTAG00000002720PRPF38A8877.992ENSFHEG00000014317prpf38a8785.328Fundulus_heteroclitus
ENSBTAG00000002720PRPF38A5694.578ENSGMOG00000011384prpf38a5494.578Gadus_morhua
ENSBTAG00000002720PRPF38A10097.756ENSGALG00000010627PRPF38A10097.756Gallus_gallus
ENSBTAG00000002720PRPF38A7590.498ENSGAFG00000012422prpf38a10082.428Gambusia_affinis
ENSBTAG00000002720PRPF38A7586.099ENSGACG00000005423prpf38a10079.365Gasterosteus_aculeatus
ENSBTAG00000002720PRPF38A10098.397ENSGAGG00000020547PRPF38A10098.397Gopherus_agassizii
ENSBTAG00000002720PRPF38A100100.000ENSGGOG00000003940PRPF38A100100.000Gorilla_gorilla
ENSBTAG00000002720PRPF38A6491.005ENSHBUG00000020572prpf38a8090.957Haplochromis_burtoni
ENSBTAG00000002720PRPF38A10083.654ENSHGLG00000007918-10083.333Heterocephalus_glaber_female
ENSBTAG00000002720PRPF38A100100.000ENSHGLG00000000475PRPF38A100100.000Heterocephalus_glaber_female
ENSBTAG00000002720PRPF38A100100.000ENSHGLG00100008935PRPF38A100100.000Heterocephalus_glaber_male
ENSBTAG00000002720PRPF38A10083.654ENSHGLG00100003928-10083.333Heterocephalus_glaber_male
ENSBTAG00000002720PRPF38A8769.373ENSHCOG00000020781prpf38a5990.957Hippocampus_comes
ENSBTAG00000002720PRPF38A7887.500ENSIPUG00000005757prpf38a8283.784Ictalurus_punctatus
ENSBTAG00000002720PRPF38A100100.000ENSSTOG00000015610PRPF38A100100.000Ictidomys_tridecemlineatus
ENSBTAG00000002720PRPF38A10098.718ENSJJAG00000015811Prpf38a10098.718Jaculus_jaculus
ENSBTAG00000002720PRPF38A7590.045ENSKMAG00000006588prpf38a10082.109Kryptolebias_marmoratus
ENSBTAG00000002720PRPF38A9679.195ENSLBEG00000020585prpf38a10079.553Labrus_bergylta
ENSBTAG00000002720PRPF38A10092.308ENSLACG00000011495PRPF38A10092.308Latimeria_chalumnae
ENSBTAG00000002720PRPF38A10080.192ENSLOCG00000006262prpf38a10081.470Lepisosteus_oculatus
ENSBTAG00000002720PRPF38A100100.000ENSLAFG00000025862PRPF38A100100.000Loxodonta_africana
ENSBTAG00000002720PRPF38A100100.000ENSMFAG00000039449PRPF38A100100.000Macaca_fascicularis
ENSBTAG00000002720PRPF38A8799.265ENSMMUG00000014333PRPF38A9899.265Macaca_mulatta
ENSBTAG00000002720PRPF38A10064.744ENSMNEG00000040242-10063.782Macaca_nemestrina
ENSBTAG00000002720PRPF38A100100.000ENSMNEG00000031221PRPF38A100100.000Macaca_nemestrina
ENSBTAG00000002720PRPF38A100100.000ENSMLEG00000041105PRPF38A100100.000Mandrillus_leucophaeus
ENSBTAG00000002720PRPF38A7588.235ENSMAMG00000015431prpf38a10081.470Mastacembelus_armatus
ENSBTAG00000002720PRPF38A7586.425ENSMZEG00005017838prpf38a10080.192Maylandia_zebra
ENSBTAG00000002720PRPF38A9697.659ENSMGAG00000011176PRPF38A10097.659Meleagris_gallopavo
ENSBTAG00000002720PRPF38A9090.943ENSMAUG00000018029-9891.892Mesocricetus_auratus
ENSBTAG00000002720PRPF38A100100.000ENSMICG00000014193PRPF38A100100.000Microcebus_murinus
ENSBTAG00000002720PRPF38A10099.679ENSMOCG00000013080Prpf38a10099.679Microtus_ochrogaster
ENSBTAG00000002720PRPF38A8884.170ENSMMOG00000016972prpf38a8984.170Mola_mola
ENSBTAG00000002720PRPF38A10098.403ENSMODG00000000644PRPF38A10098.403Monodelphis_domestica
ENSBTAG00000002720PRPF38A7588.235ENSMALG00000019363prpf38a9781.470Monopterus_albus
ENSBTAG00000002720PRPF38A10098.718MGP_CAROLIEiJ_G0026269Prpf38a10098.718Mus_caroli
ENSBTAG00000002720PRPF38A10098.718ENSMUSG00000063800Prpf38a10098.718Mus_musculus
ENSBTAG00000002720PRPF38A10098.718MGP_PahariEiJ_G0028602Prpf38a10098.718Mus_pahari
ENSBTAG00000002720PRPF38A10098.397MGP_SPRETEiJ_G0027238Prpf38a10098.522Mus_spretus
ENSBTAG00000002720PRPF38A100100.000ENSMPUG00000006896PRPF38A100100.000Mustela_putorius_furo
ENSBTAG00000002720PRPF38A10099.679ENSNGAG00000011884Prpf38a10099.679Nannospalax_galili
ENSBTAG00000002720PRPF38A7585.068ENSNBRG00000004013prpf38a8280.695Neolamprologus_brichardi
ENSBTAG00000002720PRPF38A9773.841ENSNLEG00000012592-9973.841Nomascus_leucogenys
ENSBTAG00000002720PRPF38A93100.000ENSNLEG00000017999PRPF38A93100.000Nomascus_leucogenys
ENSBTAG00000002720PRPF38A10067.308ENSNLEG00000033398-9467.308Nomascus_leucogenys
ENSBTAG00000002720PRPF38A10094.872ENSMEUG00000003860PRPF38A10094.872Notamacropus_eugenii
ENSBTAG00000002720PRPF38A8199.583ENSOPRG00000008985PRPF38A10099.583Ochotona_princeps
ENSBTAG00000002720PRPF38A100100.000ENSODEG00000005869PRPF38A100100.000Octodon_degus
ENSBTAG00000002720PRPF38A7586.878ENSONIG00000007816prpf38a10080.511Oreochromis_niloticus
ENSBTAG00000002720PRPF38A10064.968ENSOANG00000009541-10064.968Ornithorhynchus_anatinus
ENSBTAG00000002720PRPF38A100100.000ENSOCUG00000000963PRPF38A100100.000Oryctolagus_cuniculus
ENSBTAG00000002720PRPF38A9682.333ENSORLG00000013485prpf38a9982.372Oryzias_latipes
ENSBTAG00000002720PRPF38A9682.333ENSORLG00020002130prpf38a9982.372Oryzias_latipes_hni
ENSBTAG00000002720PRPF38A9682.000ENSORLG00015021393prpf38a9982.051Oryzias_latipes_hsok
ENSBTAG00000002720PRPF38A9681.879ENSOMEG00000016333prpf38a10081.789Oryzias_melastigma
ENSBTAG00000002720PRPF38A100100.000ENSOGAG00000005423PRPF38A100100.000Otolemur_garnettii
ENSBTAG00000002720PRPF38A100100.000ENSOARG00000005373PRPF38A100100.000Ovis_aries
ENSBTAG00000002720PRPF38A10077.564ENSPPAG00000033867-10077.564Pan_paniscus
ENSBTAG00000002720PRPF38A100100.000ENSPPAG00000030905PRPF38A100100.000Pan_paniscus
ENSBTAG00000002720PRPF38A100100.000ENSPPRG00000013268PRPF38A100100.000Panthera_pardus
ENSBTAG00000002720PRPF38A100100.000ENSPTIG00000015419PRPF38A100100.000Panthera_tigris_altaica
ENSBTAG00000002720PRPF38A100100.000ENSPTRG00000000739PRPF38A100100.000Pan_troglodytes
ENSBTAG00000002720PRPF38A100100.000ENSPANG00000015483PRPF38A100100.000Papio_anubis
ENSBTAG00000002720PRPF38A10078.846ENSPKIG00000011439prpf38a10080.128Paramormyrops_kingsleyae
ENSBTAG00000002720PRPF38A10097.756ENSPSIG00000017487PRPF38A10097.756Pelodiscus_sinensis
ENSBTAG00000002720PRPF38A7389.401ENSPMGG00000021352prpf38a9978.641Periophthalmus_magnuspinnatus
ENSBTAG00000002720PRPF38A10093.651ENSPEMG00000011212-10093.651Peromyscus_maniculatus_bairdii
ENSBTAG00000002720PRPF38A10099.679ENSPEMG00000023277-10099.679Peromyscus_maniculatus_bairdii
ENSBTAG00000002720PRPF38A10098.083ENSPCIG00000022369-10098.083Phascolarctos_cinereus
ENSBTAG00000002720PRPF38A8884.942ENSPFOG00000004248prpf38a10082.428Poecilia_formosa
ENSBTAG00000002720PRPF38A9677.509ENSPLAG00000010328prpf38a10082.428Poecilia_latipinna
ENSBTAG00000002720PRPF38A8979.026ENSPMEG00000011804prpf38a10082.428Poecilia_mexicana
ENSBTAG00000002720PRPF38A9573.667ENSPREG00000002835prpf38a5894.149Poecilia_reticulata
ENSBTAG00000002720PRPF38A10091.483ENSPPYG00000001348PRPF38A10091.483Pongo_abelii
ENSBTAG00000002720PRPF38A10099.359ENSPCAG00000013328PRPF38A10099.359Procavia_capensis
ENSBTAG00000002720PRPF38A100100.000ENSPCOG00000016387-100100.000Propithecus_coquereli
ENSBTAG00000002720PRPF38A10076.923ENSPCOG00000020709-7681.385Propithecus_coquereli
ENSBTAG00000002720PRPF38A100100.000ENSPVAG00000009803PRPF38A100100.000Pteropus_vampyrus
ENSBTAG00000002720PRPF38A7586.425ENSPNYG00000005571prpf38a10080.192Pundamilia_nyererei
ENSBTAG00000002720PRPF38A10082.428ENSPNAG00000010399prpf38a10082.428Pygocentrus_nattereri
ENSBTAG00000002720PRPF38A10099.359ENSRNOG00000009451Prpf38a10099.359Rattus_norvegicus
ENSBTAG00000002720PRPF38A10062.500ENSRBIG00000034053-10059.295Rhinopithecus_bieti
ENSBTAG00000002720PRPF38A100100.000ENSRBIG00000036442PRPF38A100100.000Rhinopithecus_bieti
ENSBTAG00000002720PRPF38A9878.758ENSRROG00000040003-9978.758Rhinopithecus_roxellana
ENSBTAG00000002720PRPF38A9656.701ENSRROG00000034606-10059.936Rhinopithecus_roxellana
ENSBTAG00000002720PRPF38A100100.000ENSRROG00000032788PRPF38A100100.000Rhinopithecus_roxellana
ENSBTAG00000002720PRPF38A100100.000ENSSBOG00000019515PRPF38A100100.000Saimiri_boliviensis_boliviensis
ENSBTAG00000002720PRPF38A8797.786ENSSHAG00000006906-10097.786Sarcophilus_harrisii
ENSBTAG00000002720PRPF38A9671.053ENSSHAG00000006029-7481.900Sarcophilus_harrisii
ENSBTAG00000002720PRPF38A10078.914ENSSFOG00015013572prpf38a10079.553Scleropages_formosus
ENSBTAG00000002720PRPF38A7588.688ENSSMAG00000015379prpf38a8384.556Scophthalmus_maximus
ENSBTAG00000002720PRPF38A7589.140ENSSDUG00000001324prpf38a10082.109Seriola_dumerili
ENSBTAG00000002720PRPF38A7589.140ENSSLDG00000014803prpf38a10082.109Seriola_lalandi_dorsalis
ENSBTAG00000002720PRPF38A10082.692ENSSARG00000014458PRPF38A10082.692Sorex_araneus
ENSBTAG00000002720PRPF38A10096.154ENSSPUG00000013259PRPF38A10096.154Sphenodon_punctatus
ENSBTAG00000002720PRPF38A7570.588ENSSPAG00000010449prpf38a10064.103Stegastes_partitus
ENSBTAG00000002720PRPF38A100100.000ENSSSCG00000028288PRPF38A100100.000Sus_scrofa
ENSBTAG00000002720PRPF38A10093.590ENSTGUG00000008995PRPF38A10093.590Taeniopygia_guttata
ENSBTAG00000002720PRPF38A7588.235ENSTRUG00000003374prpf38a7881.712Takifugu_rubripes
ENSBTAG00000002720PRPF38A7586.547ENSTNIG00000005533prpf38a10080.000Tetraodon_nigroviridis
ENSBTAG00000002720PRPF38A10099.359ENSTBEG00000000725PRPF38A10099.359Tupaia_belangeri
ENSBTAG00000002720PRPF38A100100.000ENSTTRG00000016139PRPF38A100100.000Tursiops_truncatus
ENSBTAG00000002720PRPF38A100100.000ENSUAMG00000000625PRPF38A100100.000Ursus_americanus
ENSBTAG00000002720PRPF38A100100.000ENSUMAG00000022674PRPF38A100100.000Ursus_maritimus
ENSBTAG00000002720PRPF38A9696.820ENSVPAG00000000907PRPF38A10094.231Vicugna_pacos
ENSBTAG00000002720PRPF38A100100.000ENSVVUG00000004475PRPF38A100100.000Vulpes_vulpes
ENSBTAG00000002720PRPF38A10084.345ENSXETG00000008060prpf38a10088.179Xenopus_tropicalis
ENSBTAG00000002720PRPF38A7588.341ENSXCOG00000007393prpf38a8683.077Xiphophorus_couchianus
ENSBTAG00000002720PRPF38A7590.498ENSXMAG00000026143prpf38a10082.428Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000398mRNA splicing, via spliceosome-ISSProcess
GO:0005634nucleus-ISSComponent
GO:0031965nuclear membrane-IEAComponent
GO:0071005U2-type precatalytic spliceosome-ISSComponent

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