EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSBTAG00000002745 (Gene tree)
Gene ID: 281630
Gene Symbol: APEX1
Alias: -
Full Name: Bos taurus apurinic/apyrimidinic endodeoxyribonuclease 1 (APEX1)%2C mRNA.
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Minus strand
Length: 2580 bases
Position: chr10:26670901-26673480
Accession: NM_176609
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000003559	Exo_endo_phos	PF03372.23	1e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000003559	-	1402	-	ENSBTAP00000003559	318 (aa)	-	A0A140T846

Gene Model

Click here to download ENSBTAG00000002745's gene model file

Pathways

Pathway ID	Pathway Name	Source
bta03410	Base excision repair	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000002745's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000002745	APEX1	100	93.711	ENSG00000100823	APEX1	100	93.711	Homo_sapiens
ENSBTAG00000002745	APEX1	88	68.459	ENSAPOG00000017002	apex1	91	68.459	Acanthochromis_polyacanthus
ENSBTAG00000002745	APEX1	100	97.170	ENSAMEG00000005418	APEX1	100	97.170	Ailuropoda_melanoleuca
ENSBTAG00000002745	APEX1	87	70.652	ENSACIG00000010653	apex1	94	70.251	Amphilophus_citrinellus
ENSBTAG00000002745	APEX1	88	68.100	ENSAOCG00000009649	apex1	90	68.100	Amphiprion_ocellaris
ENSBTAG00000002745	APEX1	88	68.100	ENSAPEG00000021453	apex1	90	68.100	Amphiprion_percula
ENSBTAG00000002745	APEX1	99	66.032	ENSATEG00000002883	apex1	97	66.032	Anabas_testudineus
ENSBTAG00000002745	APEX1	100	69.255	ENSACAG00000008099	APEX1	100	69.255	Anolis_carolinensis
ENSBTAG00000002745	APEX1	100	94.025	ENSANAG00000030117	APEX1	100	94.025	Aotus_nancymaae
ENSBTAG00000002745	APEX1	87	70.290	ENSACLG00000018441	apex1	99	65.823	Astatotilapia_calliptera
ENSBTAG00000002745	APEX1	100	65.000	ENSAMXG00000034699	apex1	100	64.062	Astyanax_mexicanus
ENSBTAG00000002745	APEX1	80	44.922	WBGene00001372	exo-3	88	44.922	Caenorhabditis_elegans
ENSBTAG00000002745	APEX1	100	94.654	ENSCJAG00000009726	APEX1	100	94.654	Callithrix_jacchus
ENSBTAG00000002745	APEX1	100	93.396	ENSCAFG00000032033	APEX1	100	93.396	Canis_familiaris
ENSBTAG00000002745	APEX1	54	88.953	ENSCAFG00020023002	-	96	88.953	Canis_lupus_dingo
ENSBTAG00000002745	APEX1	100	93.396	ENSCAFG00020014377	-	100	93.396	Canis_lupus_dingo
ENSBTAG00000002745	APEX1	98	78.526	ENSCHIG00000014537	-	99	78.526	Capra_hircus
ENSBTAG00000002745	APEX1	100	99.371	ENSCHIG00000007298	-	100	99.371	Capra_hircus
ENSBTAG00000002745	APEX1	100	95.283	ENSTSYG00000034813	APEX1	100	95.283	Carlito_syrichta
ENSBTAG00000002745	APEX1	85	88.192	ENSCAPG00000016235	APEX1	91	96.610	Cavia_aperea
ENSBTAG00000002745	APEX1	100	94.340	ENSCPOG00000030909	APEX1	100	94.340	Cavia_porcellus
ENSBTAG00000002745	APEX1	100	80.818	ENSCCAG00000031931	-	100	80.818	Cebus_capucinus
ENSBTAG00000002745	APEX1	100	94.654	ENSCCAG00000033056	-	100	94.654	Cebus_capucinus
ENSBTAG00000002745	APEX1	100	93.396	ENSCATG00000015580	APEX1	100	93.396	Cercocebus_atys
ENSBTAG00000002745	APEX1	100	94.340	ENSCLAG00000001002	APEX1	100	94.340	Chinchilla_lanigera
ENSBTAG00000002745	APEX1	100	93.082	ENSCSAG00000016670	-	100	93.082	Chlorocebus_sabaeus
ENSBTAG00000002745	APEX1	100	93.082	ENSCSAG00000016685	-	100	93.082	Chlorocebus_sabaeus
ENSBTAG00000002745	APEX1	100	71.787	ENSCPBG00000009567	APEX1	100	71.787	Chrysemys_picta_bellii
ENSBTAG00000002745	APEX1	83	58.868	ENSCING00000008137	-	84	58.868	Ciona_intestinalis
ENSBTAG00000002745	APEX1	94	49.833	ENSCSAVG00000007144	-	100	53.282	Ciona_savignyi
ENSBTAG00000002745	APEX1	100	93.396	ENSCANG00000030726	APEX1	100	93.396	Colobus_angolensis_palliatus
ENSBTAG00000002745	APEX1	100	90.252	ENSCGRG00001017046	Apex1	100	90.252	Cricetulus_griseus_chok1gshd
ENSBTAG00000002745	APEX1	100	90.252	ENSCGRG00000008984	Apex1	100	90.252	Cricetulus_griseus_crigri
ENSBTAG00000002745	APEX1	99	63.291	ENSCSEG00000017499	apex1	99	63.208	Cynoglossus_semilaevis
ENSBTAG00000002745	APEX1	99	65.823	ENSCVAG00000022075	apex1	99	65.823	Cyprinodon_variegatus
ENSBTAG00000002745	APEX1	100	65.094	ENSDARG00000045843	apex1	100	65.094	Danio_rerio
ENSBTAG00000002745	APEX1	100	90.252	ENSDNOG00000042234	APEX1	95	90.252	Dasypus_novemcinctus
ENSBTAG00000002745	APEX1	100	95.597	ENSDORG00000001616	Apex1	100	95.597	Dipodomys_ordii
ENSBTAG00000002745	APEX1	100	93.711	ENSETEG00000004855	-	100	93.711	Echinops_telfairi
ENSBTAG00000002745	APEX1	75	63.598	ENSEBUG00000000622	-	92	63.598	Eptatretus_burgeri
ENSBTAG00000002745	APEX1	100	96.226	ENSEASG00005017489	APEX1	74	96.226	Equus_asinus_asinus
ENSBTAG00000002745	APEX1	100	96.226	ENSECAG00000022325	APEX1	82	96.226	Equus_caballus
ENSBTAG00000002745	APEX1	91	95.486	ENSEEUG00000012569	APEX1	100	95.486	Erinaceus_europaeus
ENSBTAG00000002745	APEX1	100	64.151	ENSELUG00000021706	apex1	100	64.151	Esox_lucius
ENSBTAG00000002745	APEX1	100	95.912	ENSFCAG00000030869	APEX1	100	95.912	Felis_catus
ENSBTAG00000002745	APEX1	100	94.025	ENSFDAG00000006120	APEX1	100	94.025	Fukomys_damarensis
ENSBTAG00000002745	APEX1	99	67.089	ENSFHEG00000009031	apex1	83	67.089	Fundulus_heteroclitus
ENSBTAG00000002745	APEX1	99	61.129	ENSGMOG00000007943	apex1	99	61.076	Gadus_morhua
ENSBTAG00000002745	APEX1	88	71.326	ENSGAFG00000005311	apex1	99	66.772	Gambusia_affinis
ENSBTAG00000002745	APEX1	99	65.190	ENSGACG00000019497	apex1	99	68.797	Gasterosteus_aculeatus
ENSBTAG00000002745	APEX1	100	71.473	ENSGAGG00000014999	APEX1	100	71.473	Gopherus_agassizii
ENSBTAG00000002745	APEX1	100	94.025	ENSGGOG00000002128	APEX1	100	94.025	Gorilla_gorilla
ENSBTAG00000002745	APEX1	87	69.928	ENSHBUG00000005894	apex1	99	65.190	Haplochromis_burtoni
ENSBTAG00000002745	APEX1	100	95.283	ENSHGLG00000002848	APEX1	100	95.283	Heterocephalus_glaber_female
ENSBTAG00000002745	APEX1	100	95.283	ENSHGLG00100017878	APEX1	100	95.283	Heterocephalus_glaber_male
ENSBTAG00000002745	APEX1	99	64.984	ENSHCOG00000009961	apex1	99	64.353	Hippocampus_comes
ENSBTAG00000002745	APEX1	100	66.771	ENSIPUG00000005799	apex1	100	65.831	Ictalurus_punctatus
ENSBTAG00000002745	APEX1	100	93.711	ENSSTOG00000010096	APEX1	100	93.711	Ictidomys_tridecemlineatus
ENSBTAG00000002745	APEX1	100	94.025	ENSJJAG00000012067	-	100	94.025	Jaculus_jaculus
ENSBTAG00000002745	APEX1	100	84.277	ENSJJAG00000003660	-	100	84.277	Jaculus_jaculus
ENSBTAG00000002745	APEX1	100	81.761	ENSJJAG00000020465	-	100	81.761	Jaculus_jaculus
ENSBTAG00000002745	APEX1	99	65.823	ENSKMAG00000021171	apex1	99	65.823	Kryptolebias_marmoratus
ENSBTAG00000002745	APEX1	88	67.025	ENSLBEG00000010248	apex1	99	62.975	Labrus_bergylta
ENSBTAG00000002745	APEX1	100	66.562	ENSLACG00000008617	APEX1	100	65.625	Latimeria_chalumnae
ENSBTAG00000002745	APEX1	100	64.907	ENSLOCG00000015516	apex1	99	64.780	Lepisosteus_oculatus
ENSBTAG00000002745	APEX1	100	92.453	ENSLAFG00000021872	APEX1	100	92.453	Loxodonta_africana
ENSBTAG00000002745	APEX1	100	93.396	ENSMFAG00000002565	APEX1	100	93.396	Macaca_fascicularis
ENSBTAG00000002745	APEX1	100	93.396	ENSMMUG00000048039	APEX1	100	93.396	Macaca_mulatta
ENSBTAG00000002745	APEX1	100	93.396	ENSMNEG00000036944	APEX1	100	93.396	Macaca_nemestrina
ENSBTAG00000002745	APEX1	100	93.396	ENSMLEG00000042125	APEX1	100	93.396	Mandrillus_leucophaeus
ENSBTAG00000002745	APEX1	99	66.139	ENSMAMG00000023526	apex1	99	66.139	Mastacembelus_armatus
ENSBTAG00000002745	APEX1	87	70.290	ENSMZEG00005014187	apex1	99	65.823	Maylandia_zebra
ENSBTAG00000002745	APEX1	100	90.566	ENSMAUG00000013994	Apex1	100	90.566	Mesocricetus_auratus
ENSBTAG00000002745	APEX1	100	96.226	ENSMICG00000043554	APEX1	100	96.226	Microcebus_murinus
ENSBTAG00000002745	APEX1	100	91.509	ENSMOCG00000013721	Apex1	100	91.509	Microtus_ochrogaster
ENSBTAG00000002745	APEX1	88	66.786	ENSMMOG00000010031	apex1	87	66.786	Mola_mola
ENSBTAG00000002745	APEX1	100	84.688	ENSMODG00000007125	APEX1	100	84.688	Monodelphis_domestica
ENSBTAG00000002745	APEX1	88	63.082	ENSMALG00000011699	apex1	75	63.082	Monopterus_albus
ENSBTAG00000002745	APEX1	99	92.744	MGP_CAROLIEiJ_G0019209	Apex1	99	92.744	Mus_caroli
ENSBTAG00000002745	APEX1	100	93.396	ENSMUSG00000035960	Apex1	100	93.396	Mus_musculus
ENSBTAG00000002745	APEX1	100	93.396	MGP_PahariEiJ_G0030232	Apex1	100	93.396	Mus_pahari
ENSBTAG00000002745	APEX1	100	93.396	MGP_SPRETEiJ_G0020101	Apex1	100	93.396	Mus_spretus
ENSBTAG00000002745	APEX1	100	95.625	ENSMLUG00000028957	APEX1	100	95.312	Myotis_lucifugus
ENSBTAG00000002745	APEX1	100	70.440	ENSNGAG00000021748	-	99	70.440	Nannospalax_galili
ENSBTAG00000002745	APEX1	100	93.396	ENSNGAG00000002725	-	100	93.396	Nannospalax_galili
ENSBTAG00000002745	APEX1	87	69.928	ENSNBRG00000005334	apex1	91	65.506	Neolamprologus_brichardi
ENSBTAG00000002745	APEX1	100	93.711	ENSNLEG00000010839	APEX1	100	93.711	Nomascus_leucogenys
ENSBTAG00000002745	APEX1	100	86.164	ENSMEUG00000014519	APEX1	100	84.953	Notamacropus_eugenii
ENSBTAG00000002745	APEX1	100	94.969	ENSOPRG00000014029	APEX1	100	94.340	Ochotona_princeps
ENSBTAG00000002745	APEX1	100	94.969	ENSODEG00000001703	-	100	94.969	Octodon_degus
ENSBTAG00000002745	APEX1	97	75.728	ENSODEG00000004777	-	99	75.728	Octodon_degus
ENSBTAG00000002745	APEX1	100	71.605	ENSODEG00000006583	-	100	71.605	Octodon_degus
ENSBTAG00000002745	APEX1	87	70.144	ENSONIG00000012089	apex1	99	66.139	Oreochromis_niloticus
ENSBTAG00000002745	APEX1	90	83.158	ENSOANG00000008836	APEX1	80	79.321	Ornithorhynchus_anatinus
ENSBTAG00000002745	APEX1	100	94.340	ENSOCUG00000005022	APEX1	100	94.340	Oryctolagus_cuniculus
ENSBTAG00000002745	APEX1	99	65.823	ENSORLG00000012378	apex1	99	65.823	Oryzias_latipes
ENSBTAG00000002745	APEX1	99	65.823	ENSORLG00020021371	apex1	99	65.823	Oryzias_latipes_hni
ENSBTAG00000002745	APEX1	99	65.823	ENSORLG00015020089	apex1	99	65.823	Oryzias_latipes_hsok
ENSBTAG00000002745	APEX1	88	69.534	ENSOMEG00000018876	apex1	99	65.190	Oryzias_melastigma
ENSBTAG00000002745	APEX1	98	84.295	ENSOGAG00000029355	-	100	84.295	Otolemur_garnettii
ENSBTAG00000002745	APEX1	100	94.340	ENSOGAG00000013335	-	100	94.340	Otolemur_garnettii
ENSBTAG00000002745	APEX1	100	98.428	ENSOARG00000019740	-	100	98.428	Ovis_aries
ENSBTAG00000002745	APEX1	99	82.911	ENSOARG00000014424	-	100	82.595	Ovis_aries
ENSBTAG00000002745	APEX1	97	95.455	ENSOARG00000001876	-	100	95.455	Ovis_aries
ENSBTAG00000002745	APEX1	100	94.025	ENSPPAG00000038760	APEX1	100	94.025	Pan_paniscus
ENSBTAG00000002745	APEX1	100	95.597	ENSPPRG00000011794	APEX1	100	95.597	Panthera_pardus
ENSBTAG00000002745	APEX1	100	95.912	ENSPTIG00000014829	APEX1	100	95.912	Panthera_tigris_altaica
ENSBTAG00000002745	APEX1	100	94.025	ENSPTRG00000006093	APEX1	100	94.025	Pan_troglodytes
ENSBTAG00000002745	APEX1	100	93.396	ENSPANG00000022757	APEX1	100	93.396	Papio_anubis
ENSBTAG00000002745	APEX1	87	68.116	ENSPKIG00000003504	apex1	100	63.522	Paramormyrops_kingsleyae
ENSBTAG00000002745	APEX1	76	66.255	ENSPMGG00000016596	apex1	73	66.255	Periophthalmus_magnuspinnatus
ENSBTAG00000002745	APEX1	100	92.767	ENSPEMG00000019097	Apex1	100	92.767	Peromyscus_maniculatus_bairdii
ENSBTAG00000002745	APEX1	94	64.667	ENSPMAG00000007275	-	95	66.548	Petromyzon_marinus
ENSBTAG00000002745	APEX1	100	84.013	ENSPCIG00000023274	APEX1	100	85.981	Phascolarctos_cinereus
ENSBTAG00000002745	APEX1	88	71.685	ENSPFOG00000004178	apex1	99	66.772	Poecilia_formosa
ENSBTAG00000002745	APEX1	88	71.326	ENSPLAG00000012779	apex1	99	66.456	Poecilia_latipinna
ENSBTAG00000002745	APEX1	88	71.685	ENSPMEG00000019623	apex1	99	66.772	Poecilia_mexicana
ENSBTAG00000002745	APEX1	88	71.685	ENSPREG00000014298	apex1	99	66.772	Poecilia_reticulata
ENSBTAG00000002745	APEX1	100	93.711	ENSPPYG00000005565	APEX1	100	93.711	Pongo_abelii
ENSBTAG00000002745	APEX1	100	90.566	ENSPCAG00000010376	APEX1	100	90.566	Procavia_capensis
ENSBTAG00000002745	APEX1	100	95.597	ENSPCOG00000021564	APEX1	100	95.597	Propithecus_coquereli
ENSBTAG00000002745	APEX1	100	94.688	ENSPVAG00000010736	APEX1	100	94.688	Pteropus_vampyrus
ENSBTAG00000002745	APEX1	87	70.290	ENSPNYG00000023940	apex1	99	65.823	Pundamilia_nyererei
ENSBTAG00000002745	APEX1	93	64.527	ENSPNAG00000020897	apex1	96	63.390	Pygocentrus_nattereri
ENSBTAG00000002745	APEX1	100	92.453	ENSRNOG00000009663	Apex1	100	92.453	Rattus_norvegicus
ENSBTAG00000002745	APEX1	100	93.396	ENSRBIG00000038325	APEX1	99	93.396	Rhinopithecus_bieti
ENSBTAG00000002745	APEX1	100	79.560	ENSSBOG00000031372	-	100	79.560	Saimiri_boliviensis_boliviensis
ENSBTAG00000002745	APEX1	100	94.340	ENSSBOG00000018921	-	100	94.340	Saimiri_boliviensis_boliviensis
ENSBTAG00000002745	APEX1	100	83.333	ENSSHAG00000013524	APEX1	100	83.333	Sarcophilus_harrisii
ENSBTAG00000002745	APEX1	87	65.580	ENSSFOG00015001948	apex1	100	61.006	Scleropages_formosus
ENSBTAG00000002745	APEX1	87	68.841	ENSSMAG00000013348	apex1	99	64.557	Scophthalmus_maximus
ENSBTAG00000002745	APEX1	99	65.190	ENSSDUG00000016377	apex1	99	65.190	Seriola_dumerili
ENSBTAG00000002745	APEX1	99	65.506	ENSSLDG00000023005	apex1	99	65.506	Seriola_lalandi_dorsalis
ENSBTAG00000002745	APEX1	90	71.930	ENSSPUG00000000531	APEX1	95	71.930	Sphenodon_punctatus
ENSBTAG00000002745	APEX1	99	64.873	ENSSPAG00000000458	apex1	99	64.873	Stegastes_partitus
ENSBTAG00000002745	APEX1	96	56.452	ENSSSCG00000039705	-	100	55.247	Sus_scrofa
ENSBTAG00000002745	APEX1	100	95.597	ENSSSCG00000040060	-	100	95.597	Sus_scrofa
ENSBTAG00000002745	APEX1	74	59.746	ENSTGUG00000014378	APEX1	100	59.746	Taeniopygia_guttata
ENSBTAG00000002745	APEX1	87	66.667	ENSTRUG00000004268	apex1	84	66.308	Takifugu_rubripes
ENSBTAG00000002745	APEX1	99	62.658	ENSTNIG00000005778	apex1	99	62.658	Tetraodon_nigroviridis
ENSBTAG00000002745	APEX1	100	91.824	ENSTBEG00000006405	APEX1	100	91.824	Tupaia_belangeri
ENSBTAG00000002745	APEX1	74	97.034	ENSTTRG00000007860	APEX1	100	97.034	Tursiops_truncatus
ENSBTAG00000002745	APEX1	100	96.541	ENSUAMG00000010457	APEX1	100	96.541	Ursus_americanus
ENSBTAG00000002745	APEX1	100	96.541	ENSUMAG00000009178	APEX1	100	96.541	Ursus_maritimus
ENSBTAG00000002745	APEX1	74	90.678	ENSVPAG00000005083	APEX1	100	90.678	Vicugna_pacos
ENSBTAG00000002745	APEX1	100	93.082	ENSVVUG00000009010	APEX1	100	93.082	Vulpes_vulpes
ENSBTAG00000002745	APEX1	100	66.144	ENSXETG00000024773	apex1	100	66.144	Xenopus_tropicalis
ENSBTAG00000002745	APEX1	88	71.326	ENSXCOG00000015233	apex1	89	71.326	Xiphophorus_couchianus
ENSBTAG00000002745	APEX1	93	67.101	ENSXMAG00000006195	apex1	90	71.326	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003677	DNA binding	-	ISS	Function
GO:0003684	damaged DNA binding	-	ISS	Function
GO:0003713	transcription coactivator activity	-	ISS	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0003906	DNA-(apurinic or apyrimidinic site) endonuclease activity	-	ISS	Function
GO:0005634	nucleus	-	ISS	Component
GO:0005654	nucleoplasm	-	ISS	Component
GO:0005730	nucleolus	-	ISS	Component
GO:0005737	cytoplasm	-	ISS	Component
GO:0005739	mitochondrion	-	ISS	Component
GO:0005783	endoplasmic reticulum	-	IEA	Component
GO:0006281	DNA repair	-	ISS	Process
GO:0006310	DNA recombination	-	IEA	Process
GO:0008081	phosphoric diester hydrolase activity	-	ISS	Function
GO:0008408	3'-5' exonuclease activity	-	ISS	Function
GO:0016491	oxidoreductase activity	-	ISS	Function
GO:0016607	nuclear speck	-	ISS	Component
GO:0016890	site-specific endodeoxyribonuclease activity, specific for altered base	-	ISS	Function
GO:0031490	chromatin DNA binding	-	ISS	Function
GO:0042981	regulation of apoptotic process	-	ISS	Process
GO:0043488	regulation of mRNA stability	-	ISS	Process
GO:0046872	metal ion binding	-	ISS	Function
GO:0048471	perinuclear region of cytoplasm	-	ISS	Component
GO:0055114	oxidation-reduction process	-	IEA	Process
GO:0080111	DNA demethylation	-	ISS	Process
GO:0090305	nucleic acid phosphodiester bond hydrolysis	-	IEA	Process
GO:0140078	class I DNA-(apurinic or apyrimidinic site) endonuclease activity	-	IEA	Function
GO:1903508	positive regulation of nucleic acid-templated transcription	-	IEA	Process