EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSBTAG00000003063 (Gene tree)
Gene ID: 282087
Gene Symbol: SYNJ1
Alias: -
Full Name: synaptojanin 1
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Plus strand
Length: 88909 bases
Position: chr1:2827691-2916599
Accession: 35527
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000003985	Exo_endo_phos	PF03372.23	5.1e-15	1	1
ENSBTAP00000057548	Exo_endo_phos	PF03372.23	6.7e-15	1	1
ENSBTAP00000057627	Exo_endo_phos	PF03372.23	6.8e-15	1	1
ENSBTAP00000003984	Exo_endo_phos	PF03372.23	6.9e-15	1	1
ENSBTAP00000074110	Exo_endo_phos	PF03372.23	6.9e-15	1	1
ENSBTAP00000072073	Exo_endo_phos	PF03372.23	7e-15	1	1
ENSBTAP00000003985	DUF1866	PF08952.11	1.9e-58	1	1
ENSBTAP00000057548	DUF1866	PF08952.11	2.1e-58	1	1
ENSBTAP00000074110	DUF1866	PF08952.11	2.2e-58	1	1
ENSBTAP00000003984	DUF1866	PF08952.11	2.2e-58	1	1
ENSBTAP00000057627	DUF1866	PF08952.11	2.2e-58	1	1
ENSBTAP00000072073	DUF1866	PF08952.11	2.2e-58	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000003985	-	4513	-	ENSBTAP00000003985	1319 (aa)	-	F1MC12
ENSBTAT00000003984	-	5059	-	ENSBTAP00000003984	1563 (aa)	-	E1BD68
ENSBTAT00000069919	-	5059	-	ENSBTAP00000074110	1563 (aa)	-	-
ENSBTAT00000074850	-	5083	-	ENSBTAP00000057627	1571 (aa)	XP_024847635	UPI000D53AE1A
ENSBTAT00000069185	-	5107	-	ENSBTAP00000072073	1579 (aa)	-	-
ENSBTAT00000066488	-	4981	XM_024992101	ENSBTAP00000057548	1537 (aa)	XP_024847869	-

Gene Model

Click here to download ENSBTAG00000003063's gene model file

Pathways

Pathway ID	Pathway Name	Source
bta00562	Inositol phosphate metabolism	KEGG
bta01100	Metabolic pathways	KEGG
bta04070	Phosphatidylinositol signaling system	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000003063's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSBTAG00000003063	SYNJ1	80	53.595	ENSBTAG00000000817	SYNJ2	90	46.914

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000003063	SYNJ1	100	93.707	ENSG00000159082	SYNJ1	100	98.129	Homo_sapiens
ENSBTAG00000003063	SYNJ1	83	76.087	ENSAPOG00000002809	synj1	98	69.316	Acanthochromis_polyacanthus
ENSBTAG00000003063	SYNJ1	99	94.745	ENSAMEG00000015028	SYNJ1	98	91.288	Ailuropoda_melanoleuca
ENSBTAG00000003063	SYNJ1	98	60.302	ENSACIG00000008857	synj1	98	66.218	Amphilophus_citrinellus
ENSBTAG00000003063	SYNJ1	100	65.540	ENSAOCG00000009835	synj1	94	71.224	Amphiprion_ocellaris
ENSBTAG00000003063	SYNJ1	83	75.634	ENSAPEG00000021010	synj1	89	64.512	Amphiprion_percula
ENSBTAG00000003063	SYNJ1	99	67.329	ENSATEG00000002306	synj1	87	65.738	Anabas_testudineus
ENSBTAG00000003063	SYNJ1	100	85.445	ENSAPLG00000011832	SYNJ1	100	79.161	Anas_platyrhynchos
ENSBTAG00000003063	SYNJ1	100	84.091	ENSACAG00000003006	-	100	83.939	Anolis_carolinensis
ENSBTAG00000003063	SYNJ1	100	93.258	ENSANAG00000027325	SYNJ1	99	93.220	Aotus_nancymaae
ENSBTAG00000003063	SYNJ1	83	75.316	ENSACLG00000002255	synj1	99	67.589	Astatotilapia_calliptera
ENSBTAG00000003063	SYNJ1	83	77.352	ENSAMXG00000008208	synj1	95	63.740	Astyanax_mexicanus
ENSBTAG00000003063	SYNJ1	100	93.333	ENSCJAG00000009187	SYNJ1	99	93.297	Callithrix_jacchus
ENSBTAG00000003063	SYNJ1	99	94.440	ENSCAFG00000009041	SYNJ1	99	93.878	Canis_familiaris
ENSBTAG00000003063	SYNJ1	99	92.021	ENSCAFG00020025776	SYNJ1	100	90.986	Canis_lupus_dingo
ENSBTAG00000003063	SYNJ1	100	97.463	ENSCHIG00000005095	SYNJ1	100	97.463	Capra_hircus
ENSBTAG00000003063	SYNJ1	100	93.328	ENSTSYG00000014541	SYNJ1	99	93.369	Carlito_syrichta
ENSBTAG00000003063	SYNJ1	92	80.151	ENSCAPG00000014483	SYNJ1	99	80.168	Cavia_aperea
ENSBTAG00000003063	SYNJ1	100	92.494	ENSCPOG00000012182	SYNJ1	99	92.726	Cavia_porcellus
ENSBTAG00000003063	SYNJ1	100	93.030	ENSCCAG00000020825	SYNJ1	99	92.989	Cebus_capucinus
ENSBTAG00000003063	SYNJ1	100	93.859	ENSCATG00000033891	SYNJ1	99	93.832	Cercocebus_atys
ENSBTAG00000003063	SYNJ1	100	93.101	ENSCLAG00000009796	SYNJ1	100	97.547	Chinchilla_lanigera
ENSBTAG00000003063	SYNJ1	100	93.707	ENSCSAG00000009654	SYNJ1	100	93.707	Chlorocebus_sabaeus
ENSBTAG00000003063	SYNJ1	85	91.531	ENSCHOG00000012390	SYNJ1	87	91.531	Choloepus_hoffmanni
ENSBTAG00000003063	SYNJ1	94	87.832	ENSCPBG00000006402	SYNJ1	97	88.402	Chrysemys_picta_bellii
ENSBTAG00000003063	SYNJ1	100	93.859	ENSCANG00000031359	SYNJ1	99	93.832	Colobus_angolensis_palliatus
ENSBTAG00000003063	SYNJ1	100	91.433	ENSCGRG00001010861	Synj1	99	91.884	Cricetulus_griseus_chok1gshd
ENSBTAG00000003063	SYNJ1	100	91.433	ENSCGRG00000015749	Synj1	100	96.681	Cricetulus_griseus_crigri
ENSBTAG00000003063	SYNJ1	83	75.815	ENSCSEG00000019614	synj1	98	72.183	Cynoglossus_semilaevis
ENSBTAG00000003063	SYNJ1	83	73.778	ENSCVAG00000019250	synj1	95	70.054	Cyprinodon_variegatus
ENSBTAG00000003063	SYNJ1	83	77.869	ENSDARG00000025011	synj1	95	73.580	Danio_rerio
ENSBTAG00000003063	SYNJ1	98	90.208	ENSDNOG00000010732	SYNJ1	99	84.915	Dasypus_novemcinctus
ENSBTAG00000003063	SYNJ1	53	96.291	ENSDORG00000014735	-	100	97.403	Dipodomys_ordii
ENSBTAG00000003063	SYNJ1	86	94.872	ENSETEG00000018674	SYNJ1	79	94.872	Echinops_telfairi
ENSBTAG00000003063	SYNJ1	99	93.252	ENSEASG00005006287	SYNJ1	98	95.702	Equus_asinus_asinus
ENSBTAG00000003063	SYNJ1	99	95.202	ENSECAG00000004829	SYNJ1	99	94.807	Equus_caballus
ENSBTAG00000003063	SYNJ1	93	88.433	ENSEEUG00000005150	SYNJ1	95	88.931	Erinaceus_europaeus
ENSBTAG00000003063	SYNJ1	99	65.478	ENSELUG00000009731	synj1	82	72.232	Esox_lucius
ENSBTAG00000003063	SYNJ1	99	93.712	ENSFCAG00000012498	SYNJ1	99	94.830	Felis_catus
ENSBTAG00000003063	SYNJ1	75	78.963	ENSFALG00000004680	SYNJ1	100	70.780	Ficedula_albicollis
ENSBTAG00000003063	SYNJ1	100	93.252	ENSFDAG00000016818	SYNJ1	100	97.835	Fukomys_damarensis
ENSBTAG00000003063	SYNJ1	99	65.893	ENSFHEG00000017689	synj1	98	61.633	Fundulus_heteroclitus
ENSBTAG00000003063	SYNJ1	76	73.188	ENSGMOG00000014852	synj1	77	72.915	Gadus_morhua
ENSBTAG00000003063	SYNJ1	100	78.718	ENSGALG00000034317	SYNJ1	100	78.782	Gallus_gallus
ENSBTAG00000003063	SYNJ1	83	74.661	ENSGAFG00000019466	synj1	89	65.597	Gambusia_affinis
ENSBTAG00000003063	SYNJ1	82	71.376	ENSGACG00000020575	synj1	99	63.820	Gasterosteus_aculeatus
ENSBTAG00000003063	SYNJ1	100	85.810	ENSGAGG00000022523	SYNJ1	100	85.437	Gopherus_agassizii
ENSBTAG00000003063	SYNJ1	100	93.328	ENSGGOG00000015945	SYNJ1	99	93.292	Gorilla_gorilla
ENSBTAG00000003063	SYNJ1	83	75.316	ENSHBUG00000007774	synj1	99	66.131	Haplochromis_burtoni
ENSBTAG00000003063	SYNJ1	100	93.177	ENSHGLG00000006420	SYNJ1	100	97.835	Heterocephalus_glaber_female
ENSBTAG00000003063	SYNJ1	99	93.145	ENSHGLG00100012591	SYNJ1	100	97.835	Heterocephalus_glaber_male
ENSBTAG00000003063	SYNJ1	85	70.044	ENSHCOG00000012774	synj1	95	66.322	Hippocampus_comes
ENSBTAG00000003063	SYNJ1	84	76.958	ENSIPUG00000010691	SYNJ1	95	64.601	Ictalurus_punctatus
ENSBTAG00000003063	SYNJ1	100	94.238	ENSSTOG00000015806	SYNJ1	99	94.487	Ictidomys_tridecemlineatus
ENSBTAG00000003063	SYNJ1	98	87.132	ENSJJAG00000020168	Synj1	100	83.133	Jaculus_jaculus
ENSBTAG00000003063	SYNJ1	83	75.656	ENSKMAG00000004221	synj1	97	72.346	Kryptolebias_marmoratus
ENSBTAG00000003063	SYNJ1	84	74.753	ENSLBEG00000015081	synj1	96	66.413	Labrus_bergylta
ENSBTAG00000003063	SYNJ1	99	76.399	ENSLACG00000005928	SYNJ1	96	71.306	Latimeria_chalumnae
ENSBTAG00000003063	SYNJ1	99	77.080	ENSLOCG00000009230	synj1	100	70.904	Lepisosteus_oculatus
ENSBTAG00000003063	SYNJ1	99	93.450	ENSLAFG00000011806	SYNJ1	99	88.410	Loxodonta_africana
ENSBTAG00000003063	SYNJ1	98	92.863	ENSMFAG00000018883	SYNJ1	99	93.511	Macaca_fascicularis
ENSBTAG00000003063	SYNJ1	100	94.011	ENSMMUG00000004624	SYNJ1	100	94.011	Macaca_mulatta
ENSBTAG00000003063	SYNJ1	100	93.783	ENSMNEG00000040077	SYNJ1	100	89.494	Macaca_nemestrina
ENSBTAG00000003063	SYNJ1	100	93.783	ENSMLEG00000037029	SYNJ1	99	93.755	Mandrillus_leucophaeus
ENSBTAG00000003063	SYNJ1	99	68.510	ENSMAMG00000013404	synj1	88	66.304	Mastacembelus_armatus
ENSBTAG00000003063	SYNJ1	83	75.588	ENSMZEG00005024358	synj1	94	71.811	Maylandia_zebra
ENSBTAG00000003063	SYNJ1	100	84.801	ENSMGAG00000014522	SYNJ1	100	78.438	Meleagris_gallopavo
ENSBTAG00000003063	SYNJ1	100	91.585	ENSMAUG00000009743	Synj1	100	96.825	Mesocricetus_auratus
ENSBTAG00000003063	SYNJ1	100	93.783	ENSMICG00000034953	SYNJ1	99	93.909	Microcebus_murinus
ENSBTAG00000003063	SYNJ1	86	73.621	ENSMMOG00000010203	synj1	96	68.677	Mola_mola
ENSBTAG00000003063	SYNJ1	99	80.549	ENSMODG00000021073	SYNJ1	99	80.625	Monodelphis_domestica
ENSBTAG00000003063	SYNJ1	99	69.449	ENSMALG00000014015	synj1	98	61.750	Monopterus_albus
ENSBTAG00000003063	SYNJ1	100	91.818	MGP_CAROLIEiJ_G0020951	Synj1	100	96.970	Mus_caroli
ENSBTAG00000003063	SYNJ1	100	91.894	ENSMUSG00000022973	Synj1	100	97.258	Mus_musculus
ENSBTAG00000003063	SYNJ1	100	92.121	MGP_PahariEiJ_G0016656	Synj1	100	97.258	Mus_pahari
ENSBTAG00000003063	SYNJ1	100	92.197	MGP_SPRETEiJ_G0021857	Synj1	100	97.547	Mus_spretus
ENSBTAG00000003063	SYNJ1	99	94.837	ENSMPUG00000001153	SYNJ1	100	90.869	Mustela_putorius_furo
ENSBTAG00000003063	SYNJ1	61	83.843	ENSMLUG00000005764	-	100	76.562	Myotis_lucifugus
ENSBTAG00000003063	SYNJ1	51	94.100	ENSMLUG00000026584	-	100	94.519	Myotis_lucifugus
ENSBTAG00000003063	SYNJ1	100	92.722	ENSNGAG00000000453	Synj1	100	96.825	Nannospalax_galili
ENSBTAG00000003063	SYNJ1	83	72.036	ENSNBRG00000011936	synj1	95	61.968	Neolamprologus_brichardi
ENSBTAG00000003063	SYNJ1	90	88.290	ENSNLEG00000003734	SYNJ1	100	88.290	Nomascus_leucogenys
ENSBTAG00000003063	SYNJ1	88	76.600	ENSMEUG00000004158	-	73	76.600	Notamacropus_eugenii
ENSBTAG00000003063	SYNJ1	93	93.659	ENSOPRG00000013602	SYNJ1	93	93.659	Ochotona_princeps
ENSBTAG00000003063	SYNJ1	53	96.148	ENSODEG00000002409	-	100	97.258	Octodon_degus
ENSBTAG00000003063	SYNJ1	100	69.902	ENSONIG00000004667	synj1	100	67.289	Oreochromis_niloticus
ENSBTAG00000003063	SYNJ1	97	85.460	ENSOANG00000006929	SYNJ1	97	78.487	Ornithorhynchus_anatinus
ENSBTAG00000003063	SYNJ1	98	89.311	ENSOCUG00000001420	SYNJ1	100	86.132	Oryctolagus_cuniculus
ENSBTAG00000003063	SYNJ1	83	76.000	ENSORLG00000004320	synj1	95	70.407	Oryzias_latipes
ENSBTAG00000003063	SYNJ1	83	74.364	ENSORLG00020011994	synj1	94	69.075	Oryzias_latipes_hni
ENSBTAG00000003063	SYNJ1	83	76.091	ENSORLG00015018077	synj1	93	61.438	Oryzias_latipes_hsok
ENSBTAG00000003063	SYNJ1	83	75.818	ENSOMEG00000014322	synj1	95	69.033	Oryzias_melastigma
ENSBTAG00000003063	SYNJ1	99	89.116	ENSOGAG00000006010	SYNJ1	98	85.867	Otolemur_garnettii
ENSBTAG00000003063	SYNJ1	100	97.410	ENSOARG00000013414	SYNJ1	97	97.410	Ovis_aries
ENSBTAG00000003063	SYNJ1	100	93.783	ENSPPAG00000026784	SYNJ1	99	93.755	Pan_paniscus
ENSBTAG00000003063	SYNJ1	99	94.862	ENSPPRG00000023469	SYNJ1	99	94.985	Panthera_pardus
ENSBTAG00000003063	SYNJ1	99	94.862	ENSPTIG00000007930	SYNJ1	99	94.907	Panthera_tigris_altaica
ENSBTAG00000003063	SYNJ1	100	93.783	ENSPTRG00000023787	SYNJ1	99	93.755	Pan_troglodytes
ENSBTAG00000003063	SYNJ1	100	90.371	ENSPTRG00000048135	-	99	93.470	Pan_troglodytes
ENSBTAG00000003063	SYNJ1	100	93.859	ENSPANG00000022531	SYNJ1	100	93.859	Papio_anubis
ENSBTAG00000003063	SYNJ1	88	77.749	ENSPKIG00000022603	synj1	95	77.227	Paramormyrops_kingsleyae
ENSBTAG00000003063	SYNJ1	83	75.681	ENSPMGG00000016831	synj1	92	65.133	Periophthalmus_magnuspinnatus
ENSBTAG00000003063	SYNJ1	100	92.418	ENSPEMG00000018767	Synj1	100	96.970	Peromyscus_maniculatus_bairdii
ENSBTAG00000003063	SYNJ1	78	60.385	ENSPMAG00000002887	synj1	95	53.533	Petromyzon_marinus
ENSBTAG00000003063	SYNJ1	100	86.415	ENSPCIG00000016372	SYNJ1	99	87.414	Phascolarctos_cinereus
ENSBTAG00000003063	SYNJ1	83	76.294	ENSPFOG00000016886	synj1	91	73.377	Poecilia_formosa
ENSBTAG00000003063	SYNJ1	99	65.182	ENSPLAG00000017559	synj1	93	70.218	Poecilia_latipinna
ENSBTAG00000003063	SYNJ1	99	65.094	ENSPMEG00000007643	synj1	89	65.217	Poecilia_mexicana
ENSBTAG00000003063	SYNJ1	99	67.141	ENSPREG00000012412	synj1	98	69.317	Poecilia_reticulata
ENSBTAG00000003063	SYNJ1	99	93.379	ENSPPYG00000011365	SYNJ1	96	93.199	Pongo_abelii
ENSBTAG00000003063	SYNJ1	90	94.286	ENSPCAG00000009906	SYNJ1	89	94.286	Procavia_capensis
ENSBTAG00000003063	SYNJ1	94	90.842	ENSPCOG00000024841	SYNJ1	96	90.842	Propithecus_coquereli
ENSBTAG00000003063	SYNJ1	99	90.099	ENSPVAG00000000892	SYNJ1	100	86.364	Pteropus_vampyrus
ENSBTAG00000003063	SYNJ1	82	75.643	ENSPNYG00000022989	synj1	95	71.101	Pundamilia_nyererei
ENSBTAG00000003063	SYNJ1	83	77.656	ENSPNAG00000021119	synj1	89	77.870	Pygocentrus_nattereri
ENSBTAG00000003063	SYNJ1	100	92.115	ENSRNOG00000002051	Synj1	99	92.496	Rattus_norvegicus
ENSBTAG00000003063	SYNJ1	100	93.783	ENSRBIG00000034477	SYNJ1	99	93.755	Rhinopithecus_bieti
ENSBTAG00000003063	SYNJ1	100	93.935	ENSRROG00000039256	SYNJ1	99	93.909	Rhinopithecus_roxellana
ENSBTAG00000003063	SYNJ1	100	93.258	ENSSBOG00000021001	SYNJ1	99	93.220	Saimiri_boliviensis_boliviensis
ENSBTAG00000003063	SYNJ1	99	83.798	ENSSHAG00000008538	SYNJ1	99	77.778	Sarcophilus_harrisii
ENSBTAG00000003063	SYNJ1	99	72.088	ENSSFOG00015006095	synj1	95	65.540	Scleropages_formosus
ENSBTAG00000003063	SYNJ1	99	67.011	ENSSMAG00000018066	synj1	92	71.328	Scophthalmus_maximus
ENSBTAG00000003063	SYNJ1	84	75.695	ENSSDUG00000013058	synj1	97	61.108	Seriola_dumerili
ENSBTAG00000003063	SYNJ1	83	76.152	ENSSLDG00000021406	synj1	93	73.130	Seriola_lalandi_dorsalis
ENSBTAG00000003063	SYNJ1	69	96.241	ENSSARG00000009490	SYNJ1	73	96.241	Sorex_araneus
ENSBTAG00000003063	SYNJ1	99	79.604	ENSSPUG00000012552	SYNJ1	100	77.878	Sphenodon_punctatus
ENSBTAG00000003063	SYNJ1	83	75.634	ENSSPAG00000017029	synj1	93	70.652	Stegastes_partitus
ENSBTAG00000003063	SYNJ1	78	74.976	ENSSPAG00000006812	SYNJ1	95	61.107	Stegastes_partitus
ENSBTAG00000003063	SYNJ1	99	94.068	ENSSSCG00000012035	SYNJ1	100	94.122	Sus_scrofa
ENSBTAG00000003063	SYNJ1	100	84.302	ENSTGUG00000013445	SYNJ1	100	77.053	Taeniopygia_guttata
ENSBTAG00000003063	SYNJ1	88	72.464	ENSTRUG00000006907	synj1	93	68.750	Takifugu_rubripes
ENSBTAG00000003063	SYNJ1	99	67.994	ENSTNIG00000009940	synj1	100	66.911	Tetraodon_nigroviridis
ENSBTAG00000003063	SYNJ1	92	86.858	ENSTBEG00000016298	SYNJ1	92	86.858	Tupaia_belangeri
ENSBTAG00000003063	SYNJ1	100	85.370	ENSTTRG00000002222	SYNJ1	100	85.244	Tursiops_truncatus
ENSBTAG00000003063	SYNJ1	100	91.440	ENSUAMG00000018606	SYNJ1	99	97.280	Ursus_americanus
ENSBTAG00000003063	SYNJ1	100	91.121	ENSUMAG00000018419	SYNJ1	99	97.280	Ursus_maritimus
ENSBTAG00000003063	SYNJ1	87	100.000	ENSVPAG00000001241	SYNJ1	87	100.000	Vicugna_pacos
ENSBTAG00000003063	SYNJ1	100	95.224	ENSVVUG00000023125	SYNJ1	99	95.329	Vulpes_vulpes
ENSBTAG00000003063	SYNJ1	100	78.300	ENSXETG00000009899	synj1	95	72.031	Xenopus_tropicalis
ENSBTAG00000003063	SYNJ1	83	76.182	ENSXCOG00000011896	synj1	96	71.226	Xiphophorus_couchianus
ENSBTAG00000003063	SYNJ1	100	67.013	ENSXMAG00000017524	synj1	96	70.146	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	-	IEA	Function
GO:0048471	perinuclear region of cytoplasm	9199318.	IDA	Component