EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSBTAG00000003390 (Gene tree)
Gene ID: 504381
Gene Symbol: SF3A1
Alias: -
Full Name: splicing factor 3a subunit 1
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Minus strand
Length: 19449 bases
Position: chr17:69345496-69364944
Accession: 34506
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000004398	PRP21_like_P	PF12230.8	1.1e-51	1	1
ENSBTAP00000004398	Surp	PF01805.20	8.7e-46	1	2
ENSBTAP00000004398	Surp	PF01805.20	8.7e-46	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000004398	-	3044	-	ENSBTAP00000004398	793 (aa)	-	A2VDN6

Gene Model

Click here to download ENSBTAG00000003390's gene model file

Pathways

Pathway ID	Pathway Name	Source
bta03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000003390's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000003390	SF3A1	100	98.865	ENSG00000099995	SF3A1	100	98.865	Homo_sapiens
ENSBTAG00000003390	SF3A1	100	83.522	ENSAPOG00000020465	sf3a1	99	84.910	Acanthochromis_polyacanthus
ENSBTAG00000003390	SF3A1	100	98.868	ENSAMEG00000007737	SF3A1	100	98.868	Ailuropoda_melanoleuca
ENSBTAG00000003390	SF3A1	100	84.277	ENSACIG00000020672	sf3a1	99	84.910	Amphilophus_citrinellus
ENSBTAG00000003390	SF3A1	100	83.250	ENSAOCG00000003060	sf3a1	99	84.910	Amphiprion_ocellaris
ENSBTAG00000003390	SF3A1	100	83.375	ENSAPEG00000010735	sf3a1	99	85.038	Amphiprion_percula
ENSBTAG00000003390	SF3A1	96	85.938	ENSATEG00000021201	sf3a1	98	85.219	Anabas_testudineus
ENSBTAG00000003390	SF3A1	95	94.188	ENSAPLG00000009057	SF3A1	99	93.290	Anas_platyrhynchos
ENSBTAG00000003390	SF3A1	100	85.961	ENSACAG00000009415	SF3A1	100	87.315	Anolis_carolinensis
ENSBTAG00000003390	SF3A1	100	98.991	ENSANAG00000032045	SF3A1	100	98.991	Aotus_nancymaae
ENSBTAG00000003390	SF3A1	100	84.355	ENSACLG00000012622	sf3a1	99	85.531	Astatotilapia_calliptera
ENSBTAG00000003390	SF3A1	99	83.312	ENSAMXG00000005382	sf3a1	99	84.170	Astyanax_mexicanus
ENSBTAG00000003390	SF3A1	84	43.447	WBGene00004188	prp-21	94	43.502	Caenorhabditis_elegans
ENSBTAG00000003390	SF3A1	100	99.117	ENSCJAG00000010370	SF3A1	100	99.117	Callithrix_jacchus
ENSBTAG00000003390	SF3A1	100	99.496	ENSCAFG00000012559	SF3A1	100	99.496	Canis_familiaris
ENSBTAG00000003390	SF3A1	100	99.496	ENSCAFG00020000838	SF3A1	100	99.496	Canis_lupus_dingo
ENSBTAG00000003390	SF3A1	100	99.874	ENSCHIG00000018642	SF3A1	100	99.874	Capra_hircus
ENSBTAG00000003390	SF3A1	100	99.369	ENSTSYG00000004739	SF3A1	100	99.369	Carlito_syrichta
ENSBTAG00000003390	SF3A1	94	81.575	ENSCAPG00000015414	SF3A1	98	81.575	Cavia_aperea
ENSBTAG00000003390	SF3A1	100	99.243	ENSCPOG00000014589	SF3A1	100	99.243	Cavia_porcellus
ENSBTAG00000003390	SF3A1	100	98.991	ENSCCAG00000032006	SF3A1	100	98.991	Cebus_capucinus
ENSBTAG00000003390	SF3A1	100	99.243	ENSCATG00000029241	SF3A1	100	99.243	Cercocebus_atys
ENSBTAG00000003390	SF3A1	100	98.613	ENSCLAG00000006508	SF3A1	100	98.613	Chinchilla_lanigera
ENSBTAG00000003390	SF3A1	100	99.117	ENSCSAG00000009470	SF3A1	100	99.117	Chlorocebus_sabaeus
ENSBTAG00000003390	SF3A1	61	99.083	ENSCHOG00000005201	SF3A1	69	99.083	Choloepus_hoffmanni
ENSBTAG00000003390	SF3A1	100	91.184	ENSCPBG00000007595	SF3A1	100	91.310	Chrysemys_picta_bellii
ENSBTAG00000003390	SF3A1	94	52.249	ENSCING00000008526	-	66	58.046	Ciona_intestinalis
ENSBTAG00000003390	SF3A1	96	51.484	ENSCSAVG00000005608	-	92	62.712	Ciona_savignyi
ENSBTAG00000003390	SF3A1	100	99.117	ENSCANG00000033564	SF3A1	100	99.117	Colobus_angolensis_palliatus
ENSBTAG00000003390	SF3A1	100	98.613	ENSCGRG00001008933	Sf3a1	100	98.613	Cricetulus_griseus_chok1gshd
ENSBTAG00000003390	SF3A1	100	98.613	ENSCGRG00000006127	Sf3a1	100	98.613	Cricetulus_griseus_crigri
ENSBTAG00000003390	SF3A1	99	82.107	ENSCSEG00000010792	sf3a1	99	82.179	Cynoglossus_semilaevis
ENSBTAG00000003390	SF3A1	100	83.019	ENSCVAG00000004560	sf3a1	98	84.245	Cyprinodon_variegatus
ENSBTAG00000003390	SF3A1	100	82.412	ENSDARG00000041887	sf3a1	97	84.746	Danio_rerio
ENSBTAG00000003390	SF3A1	100	99.119	ENSDNOG00000010629	SF3A1	100	99.119	Dasypus_novemcinctus
ENSBTAG00000003390	SF3A1	100	99.243	ENSDORG00000005613	Sf3a1	100	99.243	Dipodomys_ordii
ENSBTAG00000003390	SF3A1	79	61.466	FBgn0266917	Sf3a1	85	59.279	Drosophila_melanogaster
ENSBTAG00000003390	SF3A1	89	95.869	ENSETEG00000017194	SF3A1	100	95.869	Echinops_telfairi
ENSBTAG00000003390	SF3A1	100	65.176	ENSEBUG00000001285	sf3a1	96	67.284	Eptatretus_burgeri
ENSBTAG00000003390	SF3A1	100	99.622	ENSEASG00005010254	SF3A1	100	99.622	Equus_asinus_asinus
ENSBTAG00000003390	SF3A1	100	99.622	ENSECAG00000023962	SF3A1	100	99.622	Equus_caballus
ENSBTAG00000003390	SF3A1	73	95.082	ENSEEUG00000003159	SF3A1	82	95.082	Erinaceus_europaeus
ENSBTAG00000003390	SF3A1	100	82.456	ENSELUG00000022578	sf3a1	98	82.821	Esox_lucius
ENSBTAG00000003390	SF3A1	100	99.496	ENSFCAG00000011932	SF3A1	100	99.496	Felis_catus
ENSBTAG00000003390	SF3A1	95	93.254	ENSFALG00000006944	SF3A1	100	91.940	Ficedula_albicollis
ENSBTAG00000003390	SF3A1	100	98.991	ENSFDAG00000009560	SF3A1	100	98.991	Fukomys_damarensis
ENSBTAG00000003390	SF3A1	100	84.151	ENSFHEG00000010866	sf3a1	98	85.417	Fundulus_heteroclitus
ENSBTAG00000003390	SF3A1	100	81.108	ENSGMOG00000016024	sf3a1	99	80.485	Gadus_morhua
ENSBTAG00000003390	SF3A1	95	94.180	ENSGALG00000007937	SF3A1	100	92.443	Gallus_gallus
ENSBTAG00000003390	SF3A1	100	83.145	ENSGAFG00000009111	sf3a1	97	84.837	Gambusia_affinis
ENSBTAG00000003390	SF3A1	100	82.368	ENSGACG00000011893	sf3a1	97	83.639	Gasterosteus_aculeatus
ENSBTAG00000003390	SF3A1	96	91.327	ENSGAGG00000000762	SF3A1	99	91.459	Gopherus_agassizii
ENSBTAG00000003390	SF3A1	100	98.865	ENSGGOG00000012631	SF3A1	100	98.865	Gorilla_gorilla
ENSBTAG00000003390	SF3A1	100	84.355	ENSHBUG00000015795	sf3a1	99	85.531	Haplochromis_burtoni
ENSBTAG00000003390	SF3A1	100	99.243	ENSHGLG00000007907	SF3A1	100	99.243	Heterocephalus_glaber_female
ENSBTAG00000003390	SF3A1	100	99.243	ENSHGLG00100013799	SF3A1	100	99.243	Heterocephalus_glaber_male
ENSBTAG00000003390	SF3A1	100	80.252	ENSHCOG00000015423	sf3a1	99	80.516	Hippocampus_comes
ENSBTAG00000003390	SF3A1	96	82.552	ENSIPUG00000002470	sf3a1	98	82.812	Ictalurus_punctatus
ENSBTAG00000003390	SF3A1	100	99.369	ENSSTOG00000013892	SF3A1	100	99.369	Ictidomys_tridecemlineatus
ENSBTAG00000003390	SF3A1	100	98.992	ENSJJAG00000022566	Sf3a1	100	98.992	Jaculus_jaculus
ENSBTAG00000003390	SF3A1	100	82.767	ENSKMAG00000002400	sf3a1	98	84.766	Kryptolebias_marmoratus
ENSBTAG00000003390	SF3A1	100	82.516	ENSLBEG00000022974	sf3a1	99	83.226	Labrus_bergylta
ENSBTAG00000003390	SF3A1	100	87.202	ENSLACG00000003565	SF3A1	97	88.411	Latimeria_chalumnae
ENSBTAG00000003390	SF3A1	100	85.213	ENSLOCG00000008251	sf3a1	97	87.013	Lepisosteus_oculatus
ENSBTAG00000003390	SF3A1	100	98.865	ENSLAFG00000000448	SF3A1	100	98.865	Loxodonta_africana
ENSBTAG00000003390	SF3A1	98	62.166	ENSLAFG00000026032	-	98	62.166	Loxodonta_africana
ENSBTAG00000003390	SF3A1	100	98.991	ENSMFAG00000031979	SF3A1	100	98.991	Macaca_fascicularis
ENSBTAG00000003390	SF3A1	100	98.991	ENSMMUG00000005547	SF3A1	100	98.991	Macaca_mulatta
ENSBTAG00000003390	SF3A1	100	98.865	ENSMNEG00000037229	SF3A1	100	98.865	Macaca_nemestrina
ENSBTAG00000003390	SF3A1	100	99.117	ENSMLEG00000041908	SF3A1	100	99.117	Mandrillus_leucophaeus
ENSBTAG00000003390	SF3A1	97	85.770	ENSMAMG00000006460	sf3a1	97	85.899	Mastacembelus_armatus
ENSBTAG00000003390	SF3A1	100	84.355	ENSMZEG00005009633	sf3a1	99	85.531	Maylandia_zebra
ENSBTAG00000003390	SF3A1	95	94.180	ENSMGAG00000001330	SF3A1	99	93.282	Meleagris_gallopavo
ENSBTAG00000003390	SF3A1	92	95.219	ENSMAUG00000020317	Sf3a1	94	95.219	Mesocricetus_auratus
ENSBTAG00000003390	SF3A1	100	98.991	ENSMICG00000010038	SF3A1	100	98.991	Microcebus_murinus
ENSBTAG00000003390	SF3A1	100	98.739	ENSMOCG00000008438	Sf3a1	100	98.739	Microtus_ochrogaster
ENSBTAG00000003390	SF3A1	100	81.635	ENSMMOG00000015588	sf3a1	98	82.239	Mola_mola
ENSBTAG00000003390	SF3A1	100	98.235	ENSMODG00000009270	SF3A1	100	98.235	Monodelphis_domestica
ENSBTAG00000003390	SF3A1	100	84.509	ENSMALG00000000148	sf3a1	99	86.104	Monopterus_albus
ENSBTAG00000003390	SF3A1	100	98.235	MGP_CAROLIEiJ_G0016029	Sf3a1	100	98.235	Mus_caroli
ENSBTAG00000003390	SF3A1	100	98.235	ENSMUSG00000002129	Sf3a1	100	98.235	Mus_musculus
ENSBTAG00000003390	SF3A1	100	98.108	MGP_PahariEiJ_G0016862	Sf3a1	100	98.108	Mus_pahari
ENSBTAG00000003390	SF3A1	100	98.235	MGP_SPRETEiJ_G0016870	Sf3a1	100	98.235	Mus_spretus
ENSBTAG00000003390	SF3A1	100	99.243	ENSMPUG00000013144	SF3A1	100	99.243	Mustela_putorius_furo
ENSBTAG00000003390	SF3A1	100	99.369	ENSMLUG00000002139	SF3A1	100	99.369	Myotis_lucifugus
ENSBTAG00000003390	SF3A1	100	98.991	ENSNGAG00000016977	Sf3a1	100	98.991	Nannospalax_galili
ENSBTAG00000003390	SF3A1	100	83.770	ENSNBRG00000016642	sf3a1	96	86.957	Neolamprologus_brichardi
ENSBTAG00000003390	SF3A1	100	99.117	ENSNLEG00000003686	SF3A1	100	99.117	Nomascus_leucogenys
ENSBTAG00000003390	SF3A1	96	88.158	ENSMEUG00000008741	SF3A1	100	88.158	Notamacropus_eugenii
ENSBTAG00000003390	SF3A1	100	98.361	ENSOPRG00000016636	SF3A1	100	98.361	Ochotona_princeps
ENSBTAG00000003390	SF3A1	100	98.865	ENSODEG00000002571	SF3A1	100	98.865	Octodon_degus
ENSBTAG00000003390	SF3A1	100	84.230	ENSONIG00000010848	sf3a1	99	84.910	Oreochromis_niloticus
ENSBTAG00000003390	SF3A1	100	98.991	ENSOCUG00000007633	SF3A1	100	98.991	Oryctolagus_cuniculus
ENSBTAG00000003390	SF3A1	96	81.890	ENSORLG00000013050	sf3a1	99	83.578	Oryzias_latipes
ENSBTAG00000003390	SF3A1	96	82.677	ENSORLG00020003236	sf3a1	94	83.712	Oryzias_latipes_hni
ENSBTAG00000003390	SF3A1	100	82.138	ENSORLG00015017411	sf3a1	99	83.871	Oryzias_latipes_hsok
ENSBTAG00000003390	SF3A1	100	82.642	ENSOMEG00000013362	sf3a1	99	83.484	Oryzias_melastigma
ENSBTAG00000003390	SF3A1	100	98.865	ENSOGAG00000012931	SF3A1	100	98.865	Otolemur_garnettii
ENSBTAG00000003390	SF3A1	100	98.108	ENSOARG00000006849	SF3A1	100	98.108	Ovis_aries
ENSBTAG00000003390	SF3A1	100	97.856	ENSPPAG00000041790	SF3A1	100	97.856	Pan_paniscus
ENSBTAG00000003390	SF3A1	100	99.496	ENSPPRG00000004391	SF3A1	100	99.496	Panthera_pardus
ENSBTAG00000003390	SF3A1	97	99.352	ENSPTIG00000000844	SF3A1	100	99.352	Panthera_tigris_altaica
ENSBTAG00000003390	SF3A1	100	98.865	ENSPTRG00000014240	SF3A1	100	98.865	Pan_troglodytes
ENSBTAG00000003390	SF3A1	100	99.117	ENSPANG00000020772	SF3A1	100	99.117	Papio_anubis
ENSBTAG00000003390	SF3A1	83	94.505	ENSPSIG00000012803	SF3A1	96	94.505	Pelodiscus_sinensis
ENSBTAG00000003390	SF3A1	96	84.293	ENSPMGG00000023096	sf3a1	100	84.293	Periophthalmus_magnuspinnatus
ENSBTAG00000003390	SF3A1	100	98.865	ENSPEMG00000009494	Sf3a1	100	98.865	Peromyscus_maniculatus_bairdii
ENSBTAG00000003390	SF3A1	69	78.221	ENSPMAG00000007139	-	90	77.944	Petromyzon_marinus
ENSBTAG00000003390	SF3A1	100	97.730	ENSPCIG00000022692	SF3A1	100	97.730	Phascolarctos_cinereus
ENSBTAG00000003390	SF3A1	100	75.251	ENSPFOG00000016768	sf3a1	93	78.912	Poecilia_formosa
ENSBTAG00000003390	SF3A1	100	83.543	ENSPLAG00000017268	sf3a1	97	85.098	Poecilia_latipinna
ENSBTAG00000003390	SF3A1	84	85.994	ENSPMEG00000019811	sf3a1	98	85.241	Poecilia_mexicana
ENSBTAG00000003390	SF3A1	100	83.668	ENSPREG00000010347	sf3a1	97	85.490	Poecilia_reticulata
ENSBTAG00000003390	SF3A1	100	99.117	ENSPPYG00000011707	SF3A1	100	99.117	Pongo_abelii
ENSBTAG00000003390	SF3A1	57	99.057	ENSPCAG00000003266	SF3A1	57	99.057	Procavia_capensis
ENSBTAG00000003390	SF3A1	100	99.243	ENSPCOG00000026630	SF3A1	100	99.243	Propithecus_coquereli
ENSBTAG00000003390	SF3A1	100	94.956	ENSPVAG00000017719	SF3A1	94	98.523	Pteropus_vampyrus
ENSBTAG00000003390	SF3A1	100	84.355	ENSPNYG00000018706	sf3a1	99	85.531	Pundamilia_nyererei
ENSBTAG00000003390	SF3A1	97	83.825	ENSPNAG00000003721	sf3a1	99	84.596	Pygocentrus_nattereri
ENSBTAG00000003390	SF3A1	100	98.235	ENSRNOG00000005218	Sf3a1	100	98.235	Rattus_norvegicus
ENSBTAG00000003390	SF3A1	100	98.991	ENSRBIG00000032167	SF3A1	100	98.991	Rhinopithecus_bieti
ENSBTAG00000003390	SF3A1	100	98.991	ENSRROG00000044908	SF3A1	100	98.991	Rhinopithecus_roxellana
ENSBTAG00000003390	SF3A1	97	95.090	ENSSBOG00000021960	SF3A1	100	99.261	Saimiri_boliviensis_boliviensis
ENSBTAG00000003390	SF3A1	97	95.472	ENSSHAG00000003666	SF3A1	98	95.602	Sarcophilus_harrisii
ENSBTAG00000003390	SF3A1	100	83.500	ENSSFOG00015004579	sf3a1	99	85.256	Scleropages_formosus
ENSBTAG00000003390	SF3A1	100	81.761	ENSSMAG00000004275	sf3a1	97	83.007	Scophthalmus_maximus
ENSBTAG00000003390	SF3A1	100	83.899	ENSSDUG00000022219	sf3a1	99	84.655	Seriola_dumerili
ENSBTAG00000003390	SF3A1	100	83.899	ENSSLDG00000012642	sf3a1	99	84.655	Seriola_lalandi_dorsalis
ENSBTAG00000003390	SF3A1	97	95.984	ENSSARG00000005960	SF3A1	100	95.984	Sorex_araneus
ENSBTAG00000003390	SF3A1	96	92.098	ENSSPUG00000018863	SF3A1	100	91.791	Sphenodon_punctatus
ENSBTAG00000003390	SF3A1	100	84.528	ENSSPAG00000011856	sf3a1	99	85.038	Stegastes_partitus
ENSBTAG00000003390	SF3A1	100	99.622	ENSSSCG00000010002	SF3A1	100	99.622	Sus_scrofa
ENSBTAG00000003390	SF3A1	95	94.195	ENSTGUG00000010547	SF3A1	99	93.515	Taeniopygia_guttata
ENSBTAG00000003390	SF3A1	100	81.258	ENSTRUG00000006118	sf3a1	97	82.092	Takifugu_rubripes
ENSBTAG00000003390	SF3A1	64	81.041	ENSTNIG00000005713	sf3a1	89	86.607	Tetraodon_nigroviridis
ENSBTAG00000003390	SF3A1	100	91.803	ENSTBEG00000012771	SF3A1	100	91.803	Tupaia_belangeri
ENSBTAG00000003390	SF3A1	100	99.370	ENSTTRG00000001535	SF3A1	100	99.370	Tursiops_truncatus
ENSBTAG00000003390	SF3A1	99	98.475	ENSUAMG00000006750	SF3A1	99	98.475	Ursus_americanus
ENSBTAG00000003390	SF3A1	99	98.342	ENSUMAG00000016665	SF3A1	98	99.351	Ursus_maritimus
ENSBTAG00000003390	SF3A1	100	99.496	ENSVVUG00000003075	SF3A1	100	99.496	Vulpes_vulpes
ENSBTAG00000003390	SF3A1	100	86.073	ENSXETG00000016144	sf3a1	100	85.571	Xenopus_tropicalis
ENSBTAG00000003390	SF3A1	100	82.893	ENSXCOG00000015653	sf3a1	97	84.575	Xiphophorus_couchianus
ENSBTAG00000003390	SF3A1	100	83.019	ENSXMAG00000002753	sf3a1	97	84.706	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	-	ISS	Process
GO:0003723	RNA binding	-	ISS	Function
GO:0005634	nucleus	-	ISS	Component
GO:0005684	U2-type spliceosomal complex	-	ISS	Component
GO:0005686	U2 snRNP	-	ISS	Component
GO:0016607	nuclear speck	-	ISS	Component
GO:0071004	U2-type prespliceosome	-	ISS	Component
GO:0071005	U2-type precatalytic spliceosome	-	ISS	Component
GO:1903241	U2-type prespliceosome assembly	-	ISS	Process