EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSBTAG00000003399 (Gene tree)
Gene ID: 537503
Gene Symbol: SMARCA5
Alias: -
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 5
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Minus strand
Length: 37798 bases
Position: chr17:14342769-14380566
Accession: 34988
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000004408	ResIII	PF04851.15	9e-11	1	1
ENSBTAP00000067943	ResIII	PF04851.15	1.1e-10	1	1
ENSBTAP00000004408	DEAD	PF00270.29	5.5e-06	1	1
ENSBTAP00000067943	DEAD	PF00270.29	6.2e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000004408	-	3784	-	ENSBTAP00000004408	1052 (aa)	-	F1N052
ENSBTAT00000070441	-	3587	-	ENSBTAP00000067943	1113 (aa)	-	UPI000572BB5C

Gene Model

Click here to download ENSBTAG00000003399's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000003399's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSBTAG00000003399	SMARCA5	93	85.949	ENSBTAG00000002292	SMARCA1	95	83.216
ENSBTAG00000003399	SMARCA5	54	42.367	ENSBTAG00000020831	CHD1L	62	42.367
ENSBTAG00000003399	SMARCA5	50	43.085	ENSBTAG00000017776	CHD2	70	41.681

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000003399	SMARCA5	100	98.194	ENSG00000153147	SMARCA5	100	98.194	Homo_sapiens
ENSBTAG00000003399	SMARCA5	100	98.954	ENSAMEG00000009585	SMARCA5	100	98.954	Ailuropoda_melanoleuca
ENSBTAG00000003399	SMARCA5	91	96.920	ENSAPLG00000009206	SMARCA5	100	96.920	Anas_platyrhynchos
ENSBTAG00000003399	SMARCA5	98	94.283	ENSACAG00000003038	SMARCA5	99	94.283	Anolis_carolinensis
ENSBTAG00000003399	SMARCA5	100	98.289	ENSANAG00000019345	SMARCA5	100	98.289	Aotus_nancymaae
ENSBTAG00000003399	SMARCA5	100	98.289	ENSCJAG00000002735	SMARCA5	100	98.289	Callithrix_jacchus
ENSBTAG00000003399	SMARCA5	100	98.764	ENSCAFG00000007525	SMARCA5	100	98.764	Canis_familiaris
ENSBTAG00000003399	SMARCA5	98	98.740	ENSCAFG00020025641	SMARCA5	99	98.740	Canis_lupus_dingo
ENSBTAG00000003399	SMARCA5	100	99.525	ENSCHIG00000013730	-	100	99.525	Capra_hircus
ENSBTAG00000003399	SMARCA5	100	97.814	ENSCHIG00000016375	-	100	97.814	Capra_hircus
ENSBTAG00000003399	SMARCA5	97	97.458	ENSTSYG00000009954	SMARCA5	99	99.698	Carlito_syrichta
ENSBTAG00000003399	SMARCA5	92	99.174	ENSCAPG00000013747	SMARCA5	95	99.174	Cavia_aperea
ENSBTAG00000003399	SMARCA5	100	97.624	ENSCPOG00000002259	SMARCA5	100	97.624	Cavia_porcellus
ENSBTAG00000003399	SMARCA5	100	98.289	ENSCCAG00000027215	SMARCA5	99	99.297	Cebus_capucinus
ENSBTAG00000003399	SMARCA5	100	98.289	ENSCATG00000044917	SMARCA5	100	98.289	Cercocebus_atys
ENSBTAG00000003399	SMARCA5	99	95.307	ENSCLAG00000006153	SMARCA5	100	99.396	Chinchilla_lanigera
ENSBTAG00000003399	SMARCA5	92	99.587	ENSCSAG00000003448	SMARCA5	100	99.587	Chlorocebus_sabaeus
ENSBTAG00000003399	SMARCA5	90	98.519	ENSCHOG00000011724	SMARCA5	90	98.519	Choloepus_hoffmanni
ENSBTAG00000003399	SMARCA5	95	98.195	ENSCPBG00000027535	SMARCA5	98	96.373	Chrysemys_picta_bellii
ENSBTAG00000003399	SMARCA5	100	98.099	ENSCANG00000041629	SMARCA5	100	98.099	Colobus_angolensis_palliatus
ENSBTAG00000003399	SMARCA5	99	97.814	ENSCGRG00001012719	Smarca5	99	97.814	Cricetulus_griseus_chok1gshd
ENSBTAG00000003399	SMARCA5	95	99.298	ENSCGRG00000001417	Smarca5	99	99.496	Cricetulus_griseus_crigri
ENSBTAG00000003399	SMARCA5	98	95.358	ENSDNOG00000009158	SMARCA5	98	95.446	Dasypus_novemcinctus
ENSBTAG00000003399	SMARCA5	90	90.928	ENSDORG00000003466	Smarca5	97	90.928	Dipodomys_ordii
ENSBTAG00000003399	SMARCA5	92	85.744	ENSEBUG00000014773	SMARCA5	96	85.744	Eptatretus_burgeri
ENSBTAG00000003399	SMARCA5	100	98.859	ENSEASG00005001866	SMARCA5	100	98.859	Equus_asinus_asinus
ENSBTAG00000003399	SMARCA5	100	98.859	ENSECAG00000002676	SMARCA5	100	98.859	Equus_caballus
ENSBTAG00000003399	SMARCA5	94	95.166	ENSEEUG00000013176	SMARCA5	100	95.166	Erinaceus_europaeus
ENSBTAG00000003399	SMARCA5	92	89.278	ENSELUG00000014653	SMARCA5	99	89.278	Esox_lucius
ENSBTAG00000003399	SMARCA5	100	99.049	ENSFCAG00000004544	SMARCA5	100	99.049	Felis_catus
ENSBTAG00000003399	SMARCA5	92	97.526	ENSFALG00000004987	SMARCA5	100	97.526	Ficedula_albicollis
ENSBTAG00000003399	SMARCA5	99	95.611	ENSFDAG00000021016	SMARCA5	100	99.597	Fukomys_damarensis
ENSBTAG00000003399	SMARCA5	99	84.947	ENSGMOG00000007519	SMARCA5	94	89.355	Gadus_morhua
ENSBTAG00000003399	SMARCA5	95	97.691	ENSGALG00000009913	SMARCA5	98	96.467	Gallus_gallus
ENSBTAG00000003399	SMARCA5	93	90.686	ENSGACG00000017238	SMARCA5	99	87.721	Gasterosteus_aculeatus
ENSBTAG00000003399	SMARCA5	96	97.233	ENSGAGG00000019882	SMARCA5	98	96.569	Gopherus_agassizii
ENSBTAG00000003399	SMARCA5	100	98.194	ENSGGOG00000012595	SMARCA5	99	99.396	Gorilla_gorilla
ENSBTAG00000003399	SMARCA5	100	97.624	ENSHGLG00000000816	-	99	97.624	Heterocephalus_glaber_female
ENSBTAG00000003399	SMARCA5	96	89.286	ENSHGLG00000000317	-	97	88.757	Heterocephalus_glaber_female
ENSBTAG00000003399	SMARCA5	96	97.923	ENSHGLG00100018421	-	100	99.496	Heterocephalus_glaber_male
ENSBTAG00000003399	SMARCA5	100	98.386	ENSSTOG00000010683	SMARCA5	99	98.386	Ictidomys_tridecemlineatus
ENSBTAG00000003399	SMARCA5	100	97.719	ENSJJAG00000014965	Smarca5	100	97.719	Jaculus_jaculus
ENSBTAG00000003399	SMARCA5	94	96.049	ENSLACG00000007091	SMARCA5	98	95.105	Latimeria_chalumnae
ENSBTAG00000003399	SMARCA5	94	92.386	ENSLOCG00000008966	SMARCA5	98	90.774	Lepisosteus_oculatus
ENSBTAG00000003399	SMARCA5	100	98.384	ENSLAFG00000007795	SMARCA5	100	98.384	Loxodonta_africana
ENSBTAG00000003399	SMARCA5	100	98.289	ENSMFAG00000043649	SMARCA5	100	98.289	Macaca_fascicularis
ENSBTAG00000003399	SMARCA5	100	98.289	ENSMMUG00000000829	SMARCA5	100	98.289	Macaca_mulatta
ENSBTAG00000003399	SMARCA5	100	98.289	ENSMNEG00000031916	SMARCA5	100	98.289	Macaca_nemestrina
ENSBTAG00000003399	SMARCA5	100	98.289	ENSMLEG00000042393	SMARCA5	100	98.289	Mandrillus_leucophaeus
ENSBTAG00000003399	SMARCA5	96	96.624	ENSMGAG00000003517	SMARCA5	99	97.686	Meleagris_gallopavo
ENSBTAG00000003399	SMARCA5	94	99.597	ENSMAUG00000015902	Smarca5	98	99.597	Mesocricetus_auratus
ENSBTAG00000003399	SMARCA5	100	98.574	ENSMICG00000003971	SMARCA5	100	98.574	Microcebus_murinus
ENSBTAG00000003399	SMARCA5	99	97.338	ENSMOCG00000016986	-	99	97.338	Microtus_ochrogaster
ENSBTAG00000003399	SMARCA5	100	96.019	ENSMODG00000000391	SMARCA5	98	96.899	Monodelphis_domestica
ENSBTAG00000003399	SMARCA5	100	97.719	ENSMUSG00000031715	Smarca5	100	97.719	Mus_musculus
ENSBTAG00000003399	SMARCA5	100	97.814	MGP_PahariEiJ_G0022862	Smarca5	100	97.814	Mus_pahari
ENSBTAG00000003399	SMARCA5	100	98.764	ENSMLUG00000000468	SMARCA5	100	98.764	Myotis_lucifugus
ENSBTAG00000003399	SMARCA5	100	97.624	ENSNGAG00000000441	Smarca5	100	97.624	Nannospalax_galili
ENSBTAG00000003399	SMARCA5	100	98.289	ENSNLEG00000005383	SMARCA5	100	98.289	Nomascus_leucogenys
ENSBTAG00000003399	SMARCA5	92	91.322	ENSMEUG00000001267	SMARCA5	100	91.322	Notamacropus_eugenii
ENSBTAG00000003399	SMARCA5	85	98.429	ENSOPRG00000014427	SMARCA5	86	98.429	Ochotona_princeps
ENSBTAG00000003399	SMARCA5	92	99.174	ENSOANG00000013921	SMARCA5	100	99.174	Ornithorhynchus_anatinus
ENSBTAG00000003399	SMARCA5	92	99.794	ENSOCUG00000013042	SMARCA5	100	99.794	Oryctolagus_cuniculus
ENSBTAG00000003399	SMARCA5	100	98.479	ENSOGAG00000009702	SMARCA5	100	98.479	Otolemur_garnettii
ENSBTAG00000003399	SMARCA5	99	99.239	ENSOARG00000010589	SMARCA5	99	99.239	Ovis_aries
ENSBTAG00000003399	SMARCA5	100	98.004	ENSPPAG00000028523	SMARCA5	99	99.295	Pan_paniscus
ENSBTAG00000003399	SMARCA5	98	93.476	ENSPPRG00000004925	SMARCA5	98	94.283	Panthera_pardus
ENSBTAG00000003399	SMARCA5	96	99.307	ENSPTIG00000020959	SMARCA5	97	99.307	Panthera_tigris_altaica
ENSBTAG00000003399	SMARCA5	100	98.099	ENSPTRG00000016472	SMARCA5	99	99.396	Pan_troglodytes
ENSBTAG00000003399	SMARCA5	100	98.289	ENSPANG00000001175	SMARCA5	100	98.289	Papio_anubis
ENSBTAG00000003399	SMARCA5	93	90.881	ENSPKIG00000015699	SMARCA5	98	89.835	Paramormyrops_kingsleyae
ENSBTAG00000003399	SMARCA5	95	89.500	ENSPKIG00000015885	SMARCA5	100	91.340	Paramormyrops_kingsleyae
ENSBTAG00000003399	SMARCA5	95	96.189	ENSPSIG00000004177	SMARCA5	100	96.189	Pelodiscus_sinensis
ENSBTAG00000003399	SMARCA5	92	90.021	ENSPMGG00000012316	SMARCA5	100	90.021	Periophthalmus_magnuspinnatus
ENSBTAG00000003399	SMARCA5	95	99.398	ENSPEMG00000008060	Smarca5	98	99.398	Peromyscus_maniculatus_bairdii
ENSBTAG00000003399	SMARCA5	61	86.739	ENSPMAG00000008026	SMARCA5	99	86.739	Petromyzon_marinus
ENSBTAG00000003399	SMARCA5	95	69.901	ENSPMAG00000006011	SMARCA5	82	84.301	Petromyzon_marinus
ENSBTAG00000003399	SMARCA5	99	96.246	ENSPCIG00000003926	SMARCA5	98	96.705	Phascolarctos_cinereus
ENSBTAG00000003399	SMARCA5	100	98.289	ENSPPYG00000015091	SMARCA5	100	98.289	Pongo_abelii
ENSBTAG00000003399	SMARCA5	86	90.090	ENSPCAG00000014230	SMARCA5	90	90.060	Procavia_capensis
ENSBTAG00000003399	SMARCA5	100	95.913	ENSPCOG00000026744	SMARCA5	100	95.913	Propithecus_coquereli
ENSBTAG00000003399	SMARCA5	99	98.573	ENSPVAG00000006482	SMARCA5	100	98.573	Pteropus_vampyrus
ENSBTAG00000003399	SMARCA5	97	88.333	ENSPNAG00000027824	SMARCA5	97	90.456	Pygocentrus_nattereri
ENSBTAG00000003399	SMARCA5	95	99.397	ENSRNOG00000018149	Smarca5	100	99.397	Rattus_norvegicus
ENSBTAG00000003399	SMARCA5	100	98.101	ENSRBIG00000044644	SMARCA5	100	98.101	Rhinopithecus_bieti
ENSBTAG00000003399	SMARCA5	98	97.967	ENSRROG00000029591	SMARCA5	99	99.397	Rhinopithecus_roxellana
ENSBTAG00000003399	SMARCA5	100	98.289	ENSSBOG00000036257	SMARCA5	100	98.289	Saimiri_boliviensis_boliviensis
ENSBTAG00000003399	SMARCA5	94	99.094	ENSSHAG00000008464	SMARCA5	100	99.094	Sarcophilus_harrisii
ENSBTAG00000003399	SMARCA5	94	90.352	ENSSFOG00015013252	SMARCA5	97	90.352	Scleropages_formosus
ENSBTAG00000003399	SMARCA5	98	94.066	ENSSPUG00000007604	SMARCA5	99	96.583	Sphenodon_punctatus
ENSBTAG00000003399	SMARCA5	100	98.764	ENSSSCG00000009047	SMARCA5	100	98.764	Sus_scrofa
ENSBTAG00000003399	SMARCA5	96	95.933	ENSTGUG00000002408	SMARCA5	100	95.933	Taeniopygia_guttata
ENSBTAG00000003399	SMARCA5	98	98.740	ENSUAMG00000023495	SMARCA5	99	98.740	Ursus_americanus
ENSBTAG00000003399	SMARCA5	95	99.601	ENSUMAG00000015324	SMARCA5	97	99.601	Ursus_maritimus
ENSBTAG00000003399	SMARCA5	100	98.669	ENSVPAG00000008982	SMARCA5	100	98.669	Vicugna_pacos
ENSBTAG00000003399	SMARCA5	100	98.859	ENSVVUG00000017473	SMARCA5	100	98.859	Vulpes_vulpes
ENSBTAG00000003399	SMARCA5	92	91.615	ENSXETG00000017566	smarca5	97	91.615	Xenopus_tropicalis