EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSBTAG00000003934 (Gene tree)
Gene ID: 506696
Gene Symbol: PSPC1
Alias: -
Full Name: Bos taurus paraspeckle component 1 (PSPC1)%2C mRNA.
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Plus strand
Length: 50793 bases
Position: chr12:36270996-36321788
Accession: NM_001075277
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000061991	RRM_1	PF00076.22	3.9e-32	1	2
ENSBTAP00000061991	RRM_1	PF00076.22	3.9e-32	2	2
ENSBTAP00000005134	RRM_1	PF00076.22	3.9e-32	1	2
ENSBTAP00000005134	RRM_1	PF00076.22	3.9e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000084782	-	1521	-	ENSBTAP00000061991	506 (aa)	-	-
ENSBTAT00000005134	-	1983	-	ENSBTAP00000005134	520 (aa)	-	Q1LZD9

Gene Model

Click here to download ENSBTAG00000003934's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000003934's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSBTAG00000003934	PSPC1	91	59.448	ENSBTAG00000012152	NONO	81	67.454
ENSBTAG00000003934	PSPC1	90	58.159	ENSBTAG00000016328	SFPQ	55	68.564

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000003934	PSPC1	100	95.793	ENSG00000121390	PSPC1	100	95.793	Homo_sapiens
ENSBTAG00000003934	PSPC1	89	70.021	ENSAPOG00000015946	pspc1	96	65.451	Acanthochromis_polyacanthus
ENSBTAG00000003934	PSPC1	100	96.353	ENSAMEG00000017420	PSPC1	100	96.353	Ailuropoda_melanoleuca
ENSBTAG00000003934	PSPC1	99	59.048	ENSACIG00000018695	pspc1	100	58.095	Amphilophus_citrinellus
ENSBTAG00000003934	PSPC1	89	69.520	ENSAOCG00000005279	pspc1	96	65.318	Amphiprion_ocellaris
ENSBTAG00000003934	PSPC1	89	70.638	ENSAPEG00000015927	pspc1	87	69.409	Amphiprion_percula
ENSBTAG00000003934	PSPC1	91	63.057	ENSATEG00000004878	pspc1	96	60.314	Anabas_testudineus
ENSBTAG00000003934	PSPC1	78	93.564	ENSAPLG00000006246	PSPC1	100	93.564	Anas_platyrhynchos
ENSBTAG00000003934	PSPC1	89	60.300	ENSAPLG00000003643	SFPQ	68	70.056	Anas_platyrhynchos
ENSBTAG00000003934	PSPC1	90	52.917	ENSACAG00000013307	-	56	65.470	Anolis_carolinensis
ENSBTAG00000003934	PSPC1	99	84.411	ENSACAG00000002093	PSPC1	99	84.952	Anolis_carolinensis
ENSBTAG00000003934	PSPC1	100	95.969	ENSANAG00000000059	PSPC1	100	95.969	Aotus_nancymaae
ENSBTAG00000003934	PSPC1	99	58.286	ENSACLG00000027220	pspc1	100	58.462	Astatotilapia_calliptera
ENSBTAG00000003934	PSPC1	91	67.959	ENSAMXG00000036881	pspc1	100	65.441	Astyanax_mexicanus
ENSBTAG00000003934	PSPC1	100	95.969	ENSCJAG00000004554	PSPC1	100	95.969	Callithrix_jacchus
ENSBTAG00000003934	PSPC1	100	96.353	ENSCAFG00020002009	PSPC1	100	96.353	Canis_lupus_dingo
ENSBTAG00000003934	PSPC1	100	100.000	ENSCHIG00000016708	PSPC1	100	100.000	Capra_hircus
ENSBTAG00000003934	PSPC1	76	94.643	ENSTSYG00000032882	PSPC1	93	90.777	Carlito_syrichta
ENSBTAG00000003934	PSPC1	100	96.169	ENSCPOG00000000395	PSPC1	100	96.169	Cavia_porcellus
ENSBTAG00000003934	PSPC1	100	95.969	ENSCCAG00000033498	PSPC1	100	95.969	Cebus_capucinus
ENSBTAG00000003934	PSPC1	100	95.793	ENSCATG00000036434	PSPC1	100	95.793	Cercocebus_atys
ENSBTAG00000003934	PSPC1	89	87.905	ENSCLAG00000005241	PSPC1	99	87.905	Chinchilla_lanigera
ENSBTAG00000003934	PSPC1	100	89.313	ENSCHOG00000008913	PSPC1	100	90.076	Choloepus_hoffmanni
ENSBTAG00000003934	PSPC1	99	86.832	ENSCPBG00000020859	PSPC1	99	86.882	Chrysemys_picta_bellii
ENSBTAG00000003934	PSPC1	59	58.442	ENSCSAVG00000003533	-	53	61.429	Ciona_savignyi
ENSBTAG00000003934	PSPC1	77	88.491	ENSCANG00000018948	PSPC1	87	100.000	Colobus_angolensis_palliatus
ENSBTAG00000003934	PSPC1	100	95.029	ENSCGRG00001018368	Pspc1	100	95.029	Cricetulus_griseus_chok1gshd
ENSBTAG00000003934	PSPC1	100	95.029	ENSCGRG00000011724	Pspc1	100	95.029	Cricetulus_griseus_crigri
ENSBTAG00000003934	PSPC1	88	66.091	ENSCVAG00000007679	-	86	65.227	Cyprinodon_variegatus
ENSBTAG00000003934	PSPC1	99	66.229	ENSDARG00000006621	pspc1	100	67.391	Danio_rerio
ENSBTAG00000003934	PSPC1	100	95.992	ENSDNOG00000011078	PSPC1	100	95.992	Dasypus_novemcinctus
ENSBTAG00000003934	PSPC1	100	92.352	ENSDORG00000016050	Pspc1	100	92.352	Dipodomys_ordii
ENSBTAG00000003934	PSPC1	55	100.000	ENSETEG00000000502	-	72	100.000	Echinops_telfairi
ENSBTAG00000003934	PSPC1	88	56.818	ENSEBUG00000003964	-	62	72.464	Eptatretus_burgeri
ENSBTAG00000003934	PSPC1	57	46.933	ENSEBUG00000010133	pspc1	77	49.492	Eptatretus_burgeri
ENSBTAG00000003934	PSPC1	100	96.545	ENSEASG00005000119	PSPC1	100	96.545	Equus_asinus_asinus
ENSBTAG00000003934	PSPC1	100	96.545	ENSECAG00000017286	PSPC1	100	96.545	Equus_caballus
ENSBTAG00000003934	PSPC1	90	83.699	ENSEEUG00000011288	-	88	83.699	Erinaceus_europaeus
ENSBTAG00000003934	PSPC1	99	65.751	ENSELUG00000003746	pspc1	94	72.589	Esox_lucius
ENSBTAG00000003934	PSPC1	100	96.545	ENSFCAG00000027841	PSPC1	100	96.545	Felis_catus
ENSBTAG00000003934	PSPC1	89	94.624	ENSFALG00000008750	PSPC1	99	87.146	Ficedula_albicollis
ENSBTAG00000003934	PSPC1	100	94.808	ENSFDAG00000002617	PSPC1	100	94.808	Fukomys_damarensis
ENSBTAG00000003934	PSPC1	88	66.595	ENSGMOG00000015074	pspc1	92	63.600	Gadus_morhua
ENSBTAG00000003934	PSPC1	89	94.805	ENSGALG00000017142	PSPC1	99	87.476	Gallus_gallus
ENSBTAG00000003934	PSPC1	62	77.846	ENSGAFG00000006327	pspc1	81	68.702	Gambusia_affinis
ENSBTAG00000003934	PSPC1	88	65.517	ENSGACG00000014901	pspc1	95	71.681	Gasterosteus_aculeatus
ENSBTAG00000003934	PSPC1	99	86.692	ENSGAGG00000019164	PSPC1	99	86.692	Gopherus_agassizii
ENSBTAG00000003934	PSPC1	92	59.375	ENSGAGG00000017325	-	56	67.935	Gopherus_agassizii
ENSBTAG00000003934	PSPC1	100	95.602	ENSGGOG00000003414	PSPC1	100	95.602	Gorilla_gorilla
ENSBTAG00000003934	PSPC1	99	64.981	ENSHBUG00000001139	pspc1	100	64.607	Haplochromis_burtoni
ENSBTAG00000003934	PSPC1	100	95.785	ENSHGLG00000018811	PSPC1	100	95.785	Heterocephalus_glaber_female
ENSBTAG00000003934	PSPC1	67	92.219	ENSHGLG00100007962	PSPC1	100	92.219	Heterocephalus_glaber_male
ENSBTAG00000003934	PSPC1	77	67.633	ENSHCOG00000013251	pspc1	93	65.796	Hippocampus_comes
ENSBTAG00000003934	PSPC1	89	73.885	ENSIPUG00000013192	pspc1	88	73.673	Ictalurus_punctatus
ENSBTAG00000003934	PSPC1	100	94.857	ENSSTOG00000026833	PSPC1	100	95.619	Ictidomys_tridecemlineatus
ENSBTAG00000003934	PSPC1	100	94.264	ENSJJAG00000018334	Pspc1	100	95.220	Jaculus_jaculus
ENSBTAG00000003934	PSPC1	89	55.292	ENSKMAG00000013525	-	96	52.039	Kryptolebias_marmoratus
ENSBTAG00000003934	PSPC1	92	65.669	ENSLBEG00000004474	pspc1	90	59.420	Labrus_bergylta
ENSBTAG00000003934	PSPC1	99	77.256	ENSLACG00000010762	PSPC1	99	78.030	Latimeria_chalumnae
ENSBTAG00000003934	PSPC1	99	77.885	ENSLOCG00000010832	pspc1	99	77.885	Lepisosteus_oculatus
ENSBTAG00000003934	PSPC1	100	95.029	ENSLAFG00000010968	PSPC1	100	95.985	Loxodonta_africana
ENSBTAG00000003934	PSPC1	100	95.985	ENSMFAG00000032728	PSPC1	100	95.985	Macaca_fascicularis
ENSBTAG00000003934	PSPC1	100	95.985	ENSMMUG00000020262	PSPC1	100	95.985	Macaca_mulatta
ENSBTAG00000003934	PSPC1	100	95.985	ENSMNEG00000027401	PSPC1	100	95.985	Macaca_nemestrina
ENSBTAG00000003934	PSPC1	84	98.997	ENSMLEG00000039043	PSPC1	100	98.997	Mandrillus_leucophaeus
ENSBTAG00000003934	PSPC1	91	66.331	ENSMAMG00000004333	pspc1	90	65.180	Mastacembelus_armatus
ENSBTAG00000003934	PSPC1	99	58.286	ENSMZEG00005005726	pspc1	100	58.462	Maylandia_zebra
ENSBTAG00000003934	PSPC1	78	93.350	ENSMGAG00000015134	PSPC1	100	93.350	Meleagris_gallopavo
ENSBTAG00000003934	PSPC1	88	90.466	ENSMAUG00000021067	Pspc1	99	90.466	Mesocricetus_auratus
ENSBTAG00000003934	PSPC1	100	95.777	ENSMICG00000013970	PSPC1	100	96.367	Microcebus_murinus
ENSBTAG00000003934	PSPC1	100	94.455	ENSMOCG00000006060	Pspc1	100	95.029	Microtus_ochrogaster
ENSBTAG00000003934	PSPC1	93	44.773	ENSMMOG00000004352	pspc1	64	56.471	Mola_mola
ENSBTAG00000003934	PSPC1	93	93.004	ENSMODG00000008029	PSPC1	78	94.033	Monodelphis_domestica
ENSBTAG00000003934	PSPC1	89	69.313	ENSMALG00000008914	pspc1	90	66.806	Monopterus_albus
ENSBTAG00000003934	PSPC1	100	94.275	MGP_CAROLIEiJ_G0019341	Pspc1	100	94.847	Mus_caroli
ENSBTAG00000003934	PSPC1	100	94.466	ENSMUSG00000021938	Pspc1	100	95.038	Mus_musculus
ENSBTAG00000003934	PSPC1	100	94.466	MGP_PahariEiJ_G0030359	Pspc1	100	95.038	Mus_pahari
ENSBTAG00000003934	PSPC1	100	94.466	MGP_SPRETEiJ_G0020232	Pspc1	100	95.038	Mus_spretus
ENSBTAG00000003934	PSPC1	100	96.545	ENSMPUG00000013347	PSPC1	100	96.545	Mustela_putorius_furo
ENSBTAG00000003934	PSPC1	100	95.229	ENSMLUG00000017663	PSPC1	100	95.229	Myotis_lucifugus
ENSBTAG00000003934	PSPC1	100	94.455	ENSNGAG00000011271	Pspc1	100	95.220	Nannospalax_galili
ENSBTAG00000003934	PSPC1	73	66.234	ENSNBRG00000014059	pspc1	92	67.717	Neolamprologus_brichardi
ENSBTAG00000003934	PSPC1	100	96.000	ENSNLEG00000001294	PSPC1	100	96.000	Nomascus_leucogenys
ENSBTAG00000003934	PSPC1	84	89.883	ENSMEUG00000000476	PSPC1	84	91.829	Notamacropus_eugenii
ENSBTAG00000003934	PSPC1	100	84.645	ENSODEG00000019012	-	100	85.795	Octodon_degus
ENSBTAG00000003934	PSPC1	100	85.185	ENSODEG00000007817	-	100	85.631	Octodon_degus
ENSBTAG00000003934	PSPC1	99	64.981	ENSONIG00000012010	pspc1	99	63.889	Oreochromis_niloticus
ENSBTAG00000003934	PSPC1	77	97.494	ENSOANG00000009017	-	100	97.494	Ornithorhynchus_anatinus
ENSBTAG00000003934	PSPC1	99	66.027	ENSOANG00000011381	-	99	65.643	Ornithorhynchus_anatinus
ENSBTAG00000003934	PSPC1	100	95.411	ENSOCUG00000006153	PSPC1	100	95.411	Oryctolagus_cuniculus
ENSBTAG00000003934	PSPC1	89	70.000	ENSORLG00000004232	-	93	62.089	Oryzias_latipes
ENSBTAG00000003934	PSPC1	89	68.723	ENSORLG00020000578	PSPC1	93	65.139	Oryzias_latipes_hni
ENSBTAG00000003934	PSPC1	89	70.426	ENSORLG00015017480	pspc1	88	66.030	Oryzias_latipes_hsok
ENSBTAG00000003934	PSPC1	100	95.985	ENSOGAG00000012643	PSPC1	100	95.985	Otolemur_garnettii
ENSBTAG00000003934	PSPC1	100	92.529	ENSOARG00000014163	PSPC1	100	92.529	Ovis_aries
ENSBTAG00000003934	PSPC1	89	95.111	ENSPPAG00000009836	PSPC1	98	95.111	Pan_paniscus
ENSBTAG00000003934	PSPC1	100	96.545	ENSPPRG00000008833	PSPC1	100	96.545	Panthera_pardus
ENSBTAG00000003934	PSPC1	100	83.077	ENSPTIG00000016917	PSPC1	100	83.077	Panthera_tigris_altaica
ENSBTAG00000003934	PSPC1	93	95.679	ENSPTRG00000005677	PSPC1	99	95.679	Pan_troglodytes
ENSBTAG00000003934	PSPC1	100	95.985	ENSPANG00000001992	PSPC1	100	95.985	Papio_anubis
ENSBTAG00000003934	PSPC1	82	78.588	ENSPKIG00000003578	pspc1	95	70.059	Paramormyrops_kingsleyae
ENSBTAG00000003934	PSPC1	99	86.553	ENSPSIG00000005168	PSPC1	99	87.476	Pelodiscus_sinensis
ENSBTAG00000003934	PSPC1	58	72.093	ENSPMGG00000015135	pspc1	83	72.000	Periophthalmus_magnuspinnatus
ENSBTAG00000003934	PSPC1	100	94.837	ENSPEMG00000015214	Pspc1	100	95.411	Peromyscus_maniculatus_bairdii
ENSBTAG00000003934	PSPC1	58	44.918	ENSPMAG00000004618	pspc1	92	44.805	Petromyzon_marinus
ENSBTAG00000003934	PSPC1	99	93.499	ENSPCIG00000017680	PSPC1	100	94.455	Phascolarctos_cinereus
ENSBTAG00000003934	PSPC1	92	66.935	ENSPFOG00000003362	pspc1	97	65.192	Poecilia_formosa
ENSBTAG00000003934	PSPC1	70	63.757	ENSPLAG00000004407	-	55	59.487	Poecilia_latipinna
ENSBTAG00000003934	PSPC1	99	63.315	ENSPLAG00000011540	pspc1	99	64.045	Poecilia_latipinna
ENSBTAG00000003934	PSPC1	99	63.315	ENSPMEG00000008322	pspc1	99	63.670	Poecilia_mexicana
ENSBTAG00000003934	PSPC1	70	63.926	ENSPMEG00000001025	-	54	59.640	Poecilia_mexicana
ENSBTAG00000003934	PSPC1	99	63.602	ENSPREG00000007786	pspc1	99	63.246	Poecilia_reticulata
ENSBTAG00000003934	PSPC1	100	94.242	ENSPPYG00000005186	PSPC1	100	95.602	Pongo_abelii
ENSBTAG00000003934	PSPC1	66	100.000	ENSPCAG00000008314	-	66	100.000	Procavia_capensis
ENSBTAG00000003934	PSPC1	100	91.587	ENSPCOG00000014364	PSPC1	100	91.587	Propithecus_coquereli
ENSBTAG00000003934	PSPC1	100	92.500	ENSPVAG00000005036	PSPC1	100	93.858	Pteropus_vampyrus
ENSBTAG00000003934	PSPC1	99	58.192	ENSPNYG00000008893	pspc1	100	58.621	Pundamilia_nyererei
ENSBTAG00000003934	PSPC1	99	67.603	ENSPNAG00000016511	pspc1	100	67.790	Pygocentrus_nattereri
ENSBTAG00000003934	PSPC1	100	94.646	ENSRNOG00000020782	Pspc1	100	95.220	Rattus_norvegicus
ENSBTAG00000003934	PSPC1	94	96.715	ENSRBIG00000036057	PSPC1	100	96.715	Rhinopithecus_bieti
ENSBTAG00000003934	PSPC1	100	95.985	ENSRROG00000036334	PSPC1	100	95.985	Rhinopithecus_roxellana
ENSBTAG00000003934	PSPC1	79	91.729	ENSSBOG00000028172	PSPC1	90	95.290	Saimiri_boliviensis_boliviensis
ENSBTAG00000003934	PSPC1	100	88.213	ENSSHAG00000004696	PSPC1	100	89.163	Sarcophilus_harrisii
ENSBTAG00000003934	PSPC1	82	79.294	ENSSFOG00015001395	pspc1	89	78.738	Scleropages_formosus
ENSBTAG00000003934	PSPC1	88	66.946	ENSSMAG00000001761	pspc1	86	74.212	Scophthalmus_maximus
ENSBTAG00000003934	PSPC1	89	68.763	ENSSDUG00000010651	pspc1	76	74.186	Seriola_dumerili
ENSBTAG00000003934	PSPC1	88	65.419	ENSSLDG00000004284	pspc1	100	56.144	Seriola_lalandi_dorsalis
ENSBTAG00000003934	PSPC1	100	88.654	ENSSARG00000000888	PSPC1	100	89.101	Sorex_araneus
ENSBTAG00000003934	PSPC1	99	79.344	ENSSPUG00000008550	PSPC1	99	79.537	Sphenodon_punctatus
ENSBTAG00000003934	PSPC1	90	53.878	ENSSPUG00000001136	-	53	61.453	Sphenodon_punctatus
ENSBTAG00000003934	PSPC1	92	67.400	ENSSPAG00000001921	pspc1	95	63.415	Stegastes_partitus
ENSBTAG00000003934	PSPC1	100	98.084	ENSSSCG00000009569	PSPC1	100	98.084	Sus_scrofa
ENSBTAG00000003934	PSPC1	89	94.624	ENSTGUG00000011295	PSPC1	99	94.624	Taeniopygia_guttata
ENSBTAG00000003934	PSPC1	89	62.845	ENSTRUG00000011335	pspc1	87	62.017	Takifugu_rubripes
ENSBTAG00000003934	PSPC1	89	64.807	ENSTNIG00000010358	pspc1	94	60.692	Tetraodon_nigroviridis
ENSBTAG00000003934	PSPC1	100	75.769	ENSTBEG00000002361	PSPC1	100	74.379	Tupaia_belangeri
ENSBTAG00000003934	PSPC1	100	98.269	ENSTTRG00000003343	PSPC1	100	98.269	Tursiops_truncatus
ENSBTAG00000003934	PSPC1	67	94.269	ENSUAMG00000012309	PSPC1	99	95.402	Ursus_americanus
ENSBTAG00000003934	PSPC1	94	96.509	ENSUMAG00000013993	PSPC1	100	96.509	Ursus_maritimus
ENSBTAG00000003934	PSPC1	77	98.997	ENSVPAG00000010029	PSPC1	100	98.997	Vicugna_pacos
ENSBTAG00000003934	PSPC1	100	96.353	ENSVVUG00000006414	PSPC1	100	96.353	Vulpes_vulpes
ENSBTAG00000003934	PSPC1	73	68.193	ENSXCOG00000017438	pspc1	86	71.585	Xiphophorus_couchianus
ENSBTAG00000003934	PSPC1	73	68.448	ENSXMAG00000007929	pspc1	86	71.858	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001650	fibrillar center	-	IEA	Component
GO:0002218	activation of innate immune response	-	IEA	Process
GO:0003723	RNA binding	-	IEA	Function
GO:0005737	cytoplasm	-	IEA	Component
GO:0016363	nuclear matrix	-	IEA	Component
GO:0016607	nuclear speck	-	IEA	Component
GO:0042382	paraspeckles	-	IEA	Component
GO:0042752	regulation of circadian rhythm	-	ISS	Process
GO:0045087	innate immune response	-	IEA	Process
GO:0045892	negative regulation of transcription, DNA-templated	-	ISS	Process
GO:0048511	rhythmic process	-	IEA	Process
GO:0070888	E-box binding	-	ISS	Function