EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSBTAG00000004051 (Gene tree)
Gene ID: 513237
Gene Symbol: SBDS
Alias: -
Full Name: Bos taurus SBDS%2C ribosome maturation factor (SBDS)%2C mRNA.
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Minus strand
Length: 5476 bases
Position: chr25:28371598-28377073
Accession: NM_001034439
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000005296	SBDS	PF01172.18	8.9e-33	1	1
ENSBTAP00000005296	SBDS_C	PF09377.10	8.4e-39	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000005296	-	2455	-	ENSBTAP00000005296	250 (aa)	-	Q3SWZ6

Gene Model

Click here to download ENSBTAG00000004051's gene model file

Pathways

Pathway ID	Pathway Name	Source
bta03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000004051's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000004051	SBDS	100	98.800	ENSG00000126524	SBDS	100	98.800	Homo_sapiens
ENSBTAG00000004051	SBDS	99	83.133	ENSAPOG00000014285	sbds	100	83.133	Acanthochromis_polyacanthus
ENSBTAG00000004051	SBDS	100	97.600	ENSAMEG00000018167	SBDS	100	97.600	Ailuropoda_melanoleuca
ENSBTAG00000004051	SBDS	99	82.937	ENSACIG00000007308	sbds	100	82.937	Amphilophus_citrinellus
ENSBTAG00000004051	SBDS	99	83.133	ENSAOCG00000016770	sbds	100	83.133	Amphiprion_ocellaris
ENSBTAG00000004051	SBDS	99	83.534	ENSAPEG00000015897	sbds	100	83.534	Amphiprion_percula
ENSBTAG00000004051	SBDS	99	83.534	ENSATEG00000006901	sbds	100	83.534	Anabas_testudineus
ENSBTAG00000004051	SBDS	92	91.775	ENSANAG00000024342	-	97	91.775	Aotus_nancymaae
ENSBTAG00000004051	SBDS	83	98.068	ENSANAG00000037501	-	100	98.068	Aotus_nancymaae
ENSBTAG00000004051	SBDS	99	84.337	ENSACLG00000018750	sbds	100	84.337	Astatotilapia_calliptera
ENSBTAG00000004051	SBDS	100	84.400	ENSAMXG00000005361	sbds	100	84.400	Astyanax_mexicanus
ENSBTAG00000004051	SBDS	98	57.724	WBGene00021063	sbds-1	97	57.724	Caenorhabditis_elegans
ENSBTAG00000004051	SBDS	100	99.200	ENSCJAG00000041007	SBDS	100	99.200	Callithrix_jacchus
ENSBTAG00000004051	SBDS	100	95.635	ENSCAFG00000010797	SBDS	100	95.635	Canis_familiaris
ENSBTAG00000004051	SBDS	100	98.000	ENSCAFG00020005357	SBDS	100	98.000	Canis_lupus_dingo
ENSBTAG00000004051	SBDS	100	99.200	ENSCHIG00000026854	SBDS	100	99.200	Capra_hircus
ENSBTAG00000004051	SBDS	100	98.800	ENSTSYG00000033822	SBDS	100	98.800	Carlito_syrichta
ENSBTAG00000004051	SBDS	66	98.171	ENSCAPG00000006634	SBDS	100	98.171	Cavia_aperea
ENSBTAG00000004051	SBDS	100	98.800	ENSCPOG00000036143	SBDS	100	98.800	Cavia_porcellus
ENSBTAG00000004051	SBDS	100	98.400	ENSCCAG00000020671	SBDS	100	98.400	Cebus_capucinus
ENSBTAG00000004051	SBDS	100	98.800	ENSCATG00000039026	SBDS	100	98.800	Cercocebus_atys
ENSBTAG00000004051	SBDS	100	98.400	ENSCLAG00000005721	-	100	98.400	Chinchilla_lanigera
ENSBTAG00000004051	SBDS	99	71.371	ENSCLAG00000002113	-	99	71.371	Chinchilla_lanigera
ENSBTAG00000004051	SBDS	100	98.800	ENSCSAG00000018275	SBDS	100	98.800	Chlorocebus_sabaeus
ENSBTAG00000004051	SBDS	100	93.600	ENSCHOG00000003795	SBDS	100	93.600	Choloepus_hoffmanni
ENSBTAG00000004051	SBDS	100	90.000	ENSCPBG00000014893	SBDS	100	90.000	Chrysemys_picta_bellii
ENSBTAG00000004051	SBDS	99	66.800	ENSCSAVG00000011811	-	100	66.800	Ciona_savignyi
ENSBTAG00000004051	SBDS	100	98.400	ENSCANG00000032368	SBDS	100	98.400	Colobus_angolensis_palliatus
ENSBTAG00000004051	SBDS	66	95.732	ENSCGRG00001019886	Sbds	100	95.732	Cricetulus_griseus_chok1gshd
ENSBTAG00000004051	SBDS	83	96.618	ENSCGRG00000009211	Sbds	100	96.618	Cricetulus_griseus_crigri
ENSBTAG00000004051	SBDS	99	81.526	ENSCSEG00000005798	sbds	100	81.526	Cynoglossus_semilaevis
ENSBTAG00000004051	SBDS	99	81.928	ENSCVAG00000001053	sbds	100	81.928	Cyprinodon_variegatus
ENSBTAG00000004051	SBDS	100	84.000	ENSDARG00000027803	sbds	100	84.000	Danio_rerio
ENSBTAG00000004051	SBDS	100	97.600	ENSDNOG00000041174	SBDS	100	97.600	Dasypus_novemcinctus
ENSBTAG00000004051	SBDS	100	96.400	ENSDORG00000026218	Sbds	100	96.400	Dipodomys_ordii
ENSBTAG00000004051	SBDS	90	58.333	FBgn0035714	CG8549	99	58.635	Drosophila_melanogaster
ENSBTAG00000004051	SBDS	93	58.798	ENSEBUG00000015780	sbds	100	58.798	Eptatretus_burgeri
ENSBTAG00000004051	SBDS	100	98.400	ENSEASG00005008821	SBDS	100	98.400	Equus_asinus_asinus
ENSBTAG00000004051	SBDS	100	98.400	ENSECAG00000008202	SBDS	100	98.400	Equus_caballus
ENSBTAG00000004051	SBDS	83	76.442	ENSEEUG00000004768	SBDS	100	76.442	Erinaceus_europaeus
ENSBTAG00000004051	SBDS	100	82.800	ENSELUG00000008382	sbds	100	82.800	Esox_lucius
ENSBTAG00000004051	SBDS	100	98.000	ENSFCAG00000022142	SBDS	100	98.000	Felis_catus
ENSBTAG00000004051	SBDS	100	89.600	ENSFALG00000013808	SBDS	100	89.600	Ficedula_albicollis
ENSBTAG00000004051	SBDS	100	98.800	ENSFDAG00000018947	-	100	98.800	Fukomys_damarensis
ENSBTAG00000004051	SBDS	99	78.715	ENSFHEG00000000708	sbds	100	78.715	Fundulus_heteroclitus
ENSBTAG00000004051	SBDS	100	83.200	ENSGMOG00000018356	sbds	99	83.200	Gadus_morhua
ENSBTAG00000004051	SBDS	100	89.600	ENSGALG00000027989	SBDS	100	89.600	Gallus_gallus
ENSBTAG00000004051	SBDS	92	78.696	ENSGAFG00000014204	sbds	100	78.696	Gambusia_affinis
ENSBTAG00000004051	SBDS	99	82.329	ENSGACG00000012697	sbds	100	82.329	Gasterosteus_aculeatus
ENSBTAG00000004051	SBDS	86	90.187	ENSGAGG00000022402	SBDS	100	90.187	Gopherus_agassizii
ENSBTAG00000004051	SBDS	96	78.423	ENSGGOG00000040023	-	92	78.423	Gorilla_gorilla
ENSBTAG00000004051	SBDS	99	84.337	ENSHBUG00000002660	sbds	100	84.337	Haplochromis_burtoni
ENSBTAG00000004051	SBDS	100	97.200	ENSHGLG00000009671	SBDS	100	97.200	Heterocephalus_glaber_female
ENSBTAG00000004051	SBDS	100	97.200	ENSHGLG00100011332	SBDS	100	97.200	Heterocephalus_glaber_male
ENSBTAG00000004051	SBDS	99	81.124	ENSHCOG00000018606	sbds	100	81.124	Hippocampus_comes
ENSBTAG00000004051	SBDS	100	85.200	ENSIPUG00000006536	sbds	100	85.200	Ictalurus_punctatus
ENSBTAG00000004051	SBDS	100	70.356	ENSJJAG00000003934	-	100	70.356	Jaculus_jaculus
ENSBTAG00000004051	SBDS	100	94.800	ENSJJAG00000012033	-	100	94.800	Jaculus_jaculus
ENSBTAG00000004051	SBDS	99	83.534	ENSKMAG00000018542	sbds	100	83.534	Kryptolebias_marmoratus
ENSBTAG00000004051	SBDS	99	80.723	ENSLBEG00000016687	sbds	100	80.723	Labrus_bergylta
ENSBTAG00000004051	SBDS	100	70.472	ENSLACG00000018916	SBDS	100	70.472	Latimeria_chalumnae
ENSBTAG00000004051	SBDS	100	87.600	ENSLOCG00000004073	sbds	100	87.600	Lepisosteus_oculatus
ENSBTAG00000004051	SBDS	100	96.800	ENSLAFG00000008763	SBDS	100	96.800	Loxodonta_africana
ENSBTAG00000004051	SBDS	100	98.800	ENSMFAG00000032620	SBDS	100	98.800	Macaca_fascicularis
ENSBTAG00000004051	SBDS	100	98.800	ENSMMUG00000045653	SBDS	100	98.800	Macaca_mulatta
ENSBTAG00000004051	SBDS	100	98.800	ENSMNEG00000031523	SBDS	100	98.800	Macaca_nemestrina
ENSBTAG00000004051	SBDS	100	74.016	ENSMLEG00000036826	SBDS	100	74.016	Mandrillus_leucophaeus
ENSBTAG00000004051	SBDS	99	83.133	ENSMAMG00000016062	sbds	100	83.133	Mastacembelus_armatus
ENSBTAG00000004051	SBDS	99	84.337	ENSMZEG00005024385	sbds	100	84.337	Maylandia_zebra
ENSBTAG00000004051	SBDS	100	89.600	ENSMGAG00000002119	SBDS	100	89.600	Meleagris_gallopavo
ENSBTAG00000004051	SBDS	99	77.108	ENSMAUG00000022214	-	100	77.108	Mesocricetus_auratus
ENSBTAG00000004051	SBDS	100	98.800	ENSMICG00000014366	SBDS	100	98.800	Microcebus_murinus
ENSBTAG00000004051	SBDS	100	98.000	ENSMOCG00000011739	Sbds	100	98.000	Microtus_ochrogaster
ENSBTAG00000004051	SBDS	99	73.600	ENSMMOG00000005061	sbds	100	73.200	Mola_mola
ENSBTAG00000004051	SBDS	100	97.200	ENSMODG00000006644	SBDS	100	97.200	Monodelphis_domestica
ENSBTAG00000004051	SBDS	99	83.133	ENSMALG00000010219	sbds	100	83.133	Monopterus_albus
ENSBTAG00000004051	SBDS	100	98.000	MGP_CAROLIEiJ_G0027800	Sbds	100	98.000	Mus_caroli
ENSBTAG00000004051	SBDS	100	97.600	ENSMUSG00000025337	Sbds	100	97.674	Mus_musculus
ENSBTAG00000004051	SBDS	100	97.600	MGP_PahariEiJ_G0024384	Sbds	100	97.674	Mus_pahari
ENSBTAG00000004051	SBDS	100	97.600	MGP_SPRETEiJ_G0028798	Sbds	100	97.674	Mus_spretus
ENSBTAG00000004051	SBDS	67	93.452	ENSMPUG00000016192	SBDS	97	93.452	Mustela_putorius_furo
ENSBTAG00000004051	SBDS	73	95.604	ENSMLUG00000013575	SBDS	100	95.604	Myotis_lucifugus
ENSBTAG00000004051	SBDS	100	98.000	ENSNGAG00000012093	Sbds	100	98.000	Nannospalax_galili
ENSBTAG00000004051	SBDS	99	84.337	ENSNBRG00000017027	sbds	100	84.337	Neolamprologus_brichardi
ENSBTAG00000004051	SBDS	100	98.800	ENSNLEG00000013288	SBDS	100	98.800	Nomascus_leucogenys
ENSBTAG00000004051	SBDS	100	95.600	ENSOPRG00000008721	SBDS	100	95.600	Ochotona_princeps
ENSBTAG00000004051	SBDS	99	73.092	ENSODEG00000000137	-	85	76.400	Octodon_degus
ENSBTAG00000004051	SBDS	100	88.800	ENSODEG00000019253	-	84	88.800	Octodon_degus
ENSBTAG00000004051	SBDS	99	77.510	ENSODEG00000001116	-	99	77.510	Octodon_degus
ENSBTAG00000004051	SBDS	99	83.534	ENSONIG00000005874	sbds	100	83.534	Oreochromis_niloticus
ENSBTAG00000004051	SBDS	83	91.787	ENSOANG00000007674	-	100	91.787	Ornithorhynchus_anatinus
ENSBTAG00000004051	SBDS	100	97.200	ENSOCUG00000003170	SBDS	100	97.200	Oryctolagus_cuniculus
ENSBTAG00000004051	SBDS	99	80.723	ENSORLG00000023489	sbds	100	80.723	Oryzias_latipes
ENSBTAG00000004051	SBDS	99	80.321	ENSORLG00020019282	sbds	100	80.321	Oryzias_latipes_hni
ENSBTAG00000004051	SBDS	99	80.321	ENSORLG00015008005	sbds	100	80.321	Oryzias_latipes_hsok
ENSBTAG00000004051	SBDS	99	81.124	ENSOMEG00000022747	sbds	100	81.124	Oryzias_melastigma
ENSBTAG00000004051	SBDS	100	81.600	ENSOGAG00000015036	-	100	81.600	Otolemur_garnettii
ENSBTAG00000004051	SBDS	100	98.000	ENSOGAG00000009011	-	100	98.000	Otolemur_garnettii
ENSBTAG00000004051	SBDS	100	99.200	ENSOARG00000010609	SBDS	100	99.200	Ovis_aries
ENSBTAG00000004051	SBDS	100	98.000	ENSPPAG00000043889	-	100	98.000	Pan_paniscus
ENSBTAG00000004051	SBDS	100	98.000	ENSPPRG00000002307	SBDS	100	98.000	Panthera_pardus
ENSBTAG00000004051	SBDS	100	98.000	ENSPTIG00000021308	SBDS	100	98.000	Panthera_tigris_altaica
ENSBTAG00000004051	SBDS	100	84.000	ENSPTRG00000050835	-	100	84.000	Pan_troglodytes
ENSBTAG00000004051	SBDS	100	83.600	ENSPTRG00000047744	-	100	83.600	Pan_troglodytes
ENSBTAG00000004051	SBDS	87	96.774	ENSPTRG00000048174	-	96	96.774	Pan_troglodytes
ENSBTAG00000004051	SBDS	100	98.800	ENSPTRG00000019254	SBDS	100	98.800	Pan_troglodytes
ENSBTAG00000004051	SBDS	100	98.400	ENSPANG00000004078	SBDS	100	98.400	Papio_anubis
ENSBTAG00000004051	SBDS	100	84.400	ENSPKIG00000006489	sbds	100	84.400	Paramormyrops_kingsleyae
ENSBTAG00000004051	SBDS	83	90.821	ENSPSIG00000014603	SBDS	99	90.821	Pelodiscus_sinensis
ENSBTAG00000004051	SBDS	99	81.928	ENSPMGG00000004246	sbds	100	81.928	Periophthalmus_magnuspinnatus
ENSBTAG00000004051	SBDS	100	97.600	ENSPEMG00000008728	Sbds	100	97.600	Peromyscus_maniculatus_bairdii
ENSBTAG00000004051	SBDS	100	95.600	ENSPCIG00000029718	SBDS	100	95.600	Phascolarctos_cinereus
ENSBTAG00000004051	SBDS	99	81.124	ENSPFOG00000015837	sbds	100	81.124	Poecilia_formosa
ENSBTAG00000004051	SBDS	99	81.124	ENSPLAG00000003641	sbds	100	81.124	Poecilia_latipinna
ENSBTAG00000004051	SBDS	99	81.124	ENSPMEG00000019483	sbds	100	81.124	Poecilia_mexicana
ENSBTAG00000004051	SBDS	99	80.723	ENSPREG00000018758	sbds	100	80.723	Poecilia_reticulata
ENSBTAG00000004051	SBDS	100	98.800	ENSPPYG00000017513	SBDS	100	98.800	Pongo_abelii
ENSBTAG00000004051	SBDS	100	99.200	ENSPCOG00000021098	SBDS	100	99.200	Propithecus_coquereli
ENSBTAG00000004051	SBDS	100	98.000	ENSPVAG00000009369	SBDS	100	98.000	Pteropus_vampyrus
ENSBTAG00000004051	SBDS	99	83.936	ENSPNYG00000022403	sbds	100	83.936	Pundamilia_nyererei
ENSBTAG00000004051	SBDS	100	85.200	ENSPNAG00000001120	sbds	100	85.200	Pygocentrus_nattereri
ENSBTAG00000004051	SBDS	100	97.600	ENSRNOG00000000888	Sbds	100	97.600	Rattus_norvegicus
ENSBTAG00000004051	SBDS	100	98.800	ENSRBIG00000035557	SBDS	100	98.800	Rhinopithecus_bieti
ENSBTAG00000004051	SBDS	100	80.800	ENSRROG00000041986	-	100	78.800	Rhinopithecus_roxellana
ENSBTAG00000004051	SBDS	100	98.800	ENSRROG00000040842	-	100	98.800	Rhinopithecus_roxellana
ENSBTAG00000004051	SBDS	96	44.082	YLR022C	-	96	43.320	Saccharomyces_cerevisiae
ENSBTAG00000004051	SBDS	93	97.845	ENSSBOG00000022460	SBDS	100	97.845	Saimiri_boliviensis_boliviensis
ENSBTAG00000004051	SBDS	100	83.600	ENSSHAG00000010263	SBDS	100	83.600	Sarcophilus_harrisii
ENSBTAG00000004051	SBDS	100	85.600	ENSSFOG00015001108	sbds	100	85.600	Scleropages_formosus
ENSBTAG00000004051	SBDS	99	83.936	ENSSMAG00000020506	sbds	100	83.936	Scophthalmus_maximus
ENSBTAG00000004051	SBDS	99	82.731	ENSSDUG00000001528	sbds	100	82.731	Seriola_dumerili
ENSBTAG00000004051	SBDS	99	83.133	ENSSLDG00000003659	sbds	100	83.133	Seriola_lalandi_dorsalis
ENSBTAG00000004051	SBDS	73	98.837	ENSSARG00000001899	-	73	98.837	Sorex_araneus
ENSBTAG00000004051	SBDS	61	98.039	ENSSARG00000013132	-	100	98.039	Sorex_araneus
ENSBTAG00000004051	SBDS	100	87.200	ENSSPUG00000002699	SBDS	100	87.200	Sphenodon_punctatus
ENSBTAG00000004051	SBDS	99	83.133	ENSSPAG00000016419	sbds	100	75.600	Stegastes_partitus
ENSBTAG00000004051	SBDS	100	98.800	ENSSSCG00000007732	SBDS	100	98.800	Sus_scrofa
ENSBTAG00000004051	SBDS	66	89.697	ENSTGUG00000003426	SBDS	99	89.697	Taeniopygia_guttata
ENSBTAG00000004051	SBDS	99	83.133	ENSTRUG00000021443	sbds	100	83.133	Takifugu_rubripes
ENSBTAG00000004051	SBDS	99	81.928	ENSTNIG00000019000	sbds	100	81.928	Tetraodon_nigroviridis
ENSBTAG00000004051	SBDS	83	84.135	ENSTBEG00000001178	SBDS	100	84.135	Tupaia_belangeri
ENSBTAG00000004051	SBDS	100	79.200	ENSTTRG00000003921	SBDS	100	79.200	Tursiops_truncatus
ENSBTAG00000004051	SBDS	100	97.600	ENSUAMG00000001326	SBDS	100	97.600	Ursus_americanus
ENSBTAG00000004051	SBDS	100	97.600	ENSUMAG00000015353	SBDS	100	97.600	Ursus_maritimus
ENSBTAG00000004051	SBDS	100	98.000	ENSVVUG00000016478	SBDS	100	98.000	Vulpes_vulpes
ENSBTAG00000004051	SBDS	100	86.400	ENSXETG00000010093	sbds	100	86.400	Xenopus_tropicalis
ENSBTAG00000004051	SBDS	99	74.297	ENSXCOG00000010639	sbds	100	74.297	Xiphophorus_couchianus
ENSBTAG00000004051	SBDS	99	81.526	ENSXMAG00000006065	sbds	100	81.526	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000922	spindle pole	-	ISS	Component
GO:0001833	inner cell mass cell proliferation	-	IEA	Process
GO:0005654	nucleoplasm	-	IEA	Component
GO:0005730	nucleolus	-	ISS	Component
GO:0005737	cytoplasm	-	ISS	Component
GO:0005829	cytosol	-	IEA	Component
GO:0006364	rRNA processing	-	ISS	Process
GO:0007052	mitotic spindle organization	-	ISS	Process
GO:0008017	microtubule binding	-	ISS	Function
GO:0008283	cell proliferation	-	ISS	Process
GO:0019843	rRNA binding	-	ISS	Function
GO:0030282	bone mineralization	-	ISS	Process
GO:0030595	leukocyte chemotaxis	-	ISS	Process
GO:0042256	mature ribosome assembly	-	ISS	Process
GO:0043022	ribosome binding	-	ISS	Function
GO:0048539	bone marrow development	-	ISS	Process