EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSBTAG00000004054 (Gene tree)
Gene ID: 338051
Gene Symbol: PAPOLA
Alias: -
Full Name: Bos taurus poly(A) polymerase alpha (PAPOLA)%2C mRNA.
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Plus strand
Length: 51615 bases
Position: chr21:61358353-61409967
Accession: NM_176647
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000021001	PAP_RNA-bind	PF04926.15	6.8e-25	1	1
ENSBTAP00000054531	PAP_RNA-bind	PF04926.15	7.2e-23	1	1
ENSBTAP00000070125	PAP_RNA-bind	PF04926.15	8.1e-23	1	1
ENSBTAP00000005300	PAP_RNA-bind	PF04926.15	8.2e-23	1	1
ENSBTAP00000073947	PAP_RNA-bind	PF04926.15	8.2e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000067236	-	2220	-	ENSBTAP00000073947	739 (aa)	-	-
ENSBTAT00000070614	-	2223	-	ENSBTAP00000070125	740 (aa)	-	-
ENSBTAT00000063150	-	2587	-	ENSBTAP00000054531	718 (aa)	XP_005222187	G3MYA2
ENSBTAT00000005300	-	2650	-	ENSBTAP00000005300	739 (aa)	-	P25500
ENSBTAT00000021001	-	2512	-	ENSBTAP00000021001	693 (aa)	XP_005222189	Q3T0A2

Gene Model

Click here to download ENSBTAG00000004054's gene model file

Pathways

Pathway ID	Pathway Name	Source
bta03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000004054's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSBTAG00000004054	PAPOLA	99	84.302	ENSBTAG00000052734	PAPOLB	98	84.302
ENSBTAG00000004054	PAPOLA	98	60.870	ENSBTAG00000007414	PAPOLG	99	61.233

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000004054	PAPOLA	100	97.514	ENSG00000090060	PAPOLA	100	97.514	Homo_sapiens
ENSBTAG00000004054	PAPOLA	99	98.103	ENSAMEG00000014142	PAPOLA	99	98.103	Ailuropoda_melanoleuca
ENSBTAG00000004054	PAPOLA	99	91.057	ENSAPLG00000006645	PAPOLA	99	90.638	Anas_platyrhynchos
ENSBTAG00000004054	PAPOLA	99	92.402	ENSACAG00000013474	PAPOLA	99	95.599	Anolis_carolinensis
ENSBTAG00000004054	PAPOLA	100	97.238	ENSANAG00000018274	PAPOLA	99	98.897	Aotus_nancymaae
ENSBTAG00000004054	PAPOLA	77	91.386	ENSANAG00000027941	-	98	91.386	Aotus_nancymaae
ENSBTAG00000004054	PAPOLA	100	73.391	ENSAMXG00000018141	papola	99	85.199	Astyanax_mexicanus
ENSBTAG00000004054	PAPOLA	100	97.425	ENSCJAG00000006512	PAPOLA	99	98.897	Callithrix_jacchus
ENSBTAG00000004054	PAPOLA	100	97.718	ENSCAFG00000017783	PAPOLA	100	97.718	Canis_familiaris
ENSBTAG00000004054	PAPOLA	100	98.241	ENSCAFG00020011550	PAPOLA	100	98.241	Canis_lupus_dingo
ENSBTAG00000004054	PAPOLA	100	99.594	ENSCHIG00000025004	-	100	99.594	Capra_hircus
ENSBTAG00000004054	PAPOLA	100	97.297	ENSTSYG00000012384	PAPOLA	100	97.297	Carlito_syrichta
ENSBTAG00000004054	PAPOLA	100	93.506	ENSCPOG00000002648	PAPOLA	100	93.506	Cavia_porcellus
ENSBTAG00000004054	PAPOLA	100	97.376	ENSCCAG00000025120	PAPOLA	100	97.376	Cebus_capucinus
ENSBTAG00000004054	PAPOLA	100	97.514	ENSCATG00000018815	PAPOLA	99	99.255	Cercocebus_atys
ENSBTAG00000004054	PAPOLA	100	97.691	ENSCLAG00000016342	PAPOLA	100	97.691	Chinchilla_lanigera
ENSBTAG00000004054	PAPOLA	100	97.450	ENSCSAG00000010516	PAPOLA	100	97.450	Chlorocebus_sabaeus
ENSBTAG00000004054	PAPOLA	72	83.924	ENSCHOG00000001115	PAPOLA	72	83.924	Choloepus_hoffmanni
ENSBTAG00000004054	PAPOLA	100	92.973	ENSCPBG00000024125	PAPOLA	100	92.973	Chrysemys_picta_bellii
ENSBTAG00000004054	PAPOLA	99	92.328	ENSCANG00000000159	PAPOLA	100	92.328	Colobus_angolensis_palliatus
ENSBTAG00000004054	PAPOLA	99	84.417	ENSCGRG00001002732	-	99	84.417	Cricetulus_griseus_chok1gshd
ENSBTAG00000004054	PAPOLA	100	88.227	ENSCGRG00001000229	-	99	89.871	Cricetulus_griseus_chok1gshd
ENSBTAG00000004054	PAPOLA	100	97.547	ENSCGRG00001022693	-	100	97.547	Cricetulus_griseus_chok1gshd
ENSBTAG00000004054	PAPOLA	99	97.536	ENSCGRG00000003664	-	100	97.536	Cricetulus_griseus_crigri
ENSBTAG00000004054	PAPOLA	98	81.129	ENSCGRG00000001888	-	96	80.579	Cricetulus_griseus_crigri
ENSBTAG00000004054	PAPOLA	100	84.278	ENSCGRG00000000257	-	100	84.278	Cricetulus_griseus_crigri
ENSBTAG00000004054	PAPOLA	69	53.638	ENSCSEG00000001841	-	71	53.638	Cynoglossus_semilaevis
ENSBTAG00000004054	PAPOLA	100	71.074	ENSDARG00000009585	papola	100	70.799	Danio_rerio
ENSBTAG00000004054	PAPOLA	64	90.890	ENSDORG00000013415	-	100	91.102	Dipodomys_ordii
ENSBTAG00000004054	PAPOLA	99	84.261	ENSETEG00000004889	PAPOLA	100	84.125	Echinops_telfairi
ENSBTAG00000004054	PAPOLA	100	68.643	ENSELUG00000018972	papola	100	68.338	Esox_lucius
ENSBTAG00000004054	PAPOLA	100	98.990	ENSFCAG00000006784	PAPOLA	100	98.990	Felis_catus
ENSBTAG00000004054	PAPOLA	99	93.750	ENSFALG00000002547	PAPOLA	98	87.632	Ficedula_albicollis
ENSBTAG00000004054	PAPOLA	99	96.232	ENSFDAG00000010370	PAPOLA	100	96.232	Fukomys_damarensis
ENSBTAG00000004054	PAPOLA	73	65.996	ENSGMOG00000010209	papola	100	66.362	Gadus_morhua
ENSBTAG00000004054	PAPOLA	100	90.405	ENSGALG00000033099	PAPOLA	100	90.122	Gallus_gallus
ENSBTAG00000004054	PAPOLA	69	53.958	ENSGACG00000006142	-	100	53.542	Gasterosteus_aculeatus
ENSBTAG00000004054	PAPOLA	96	95.166	ENSGAGG00000020500	PAPOLA	99	95.166	Gopherus_agassizii
ENSBTAG00000004054	PAPOLA	100	97.514	ENSGGOG00000006287	PAPOLA	100	97.514	Gorilla_gorilla
ENSBTAG00000004054	PAPOLA	99	85.034	ENSHGLG00000017457	-	100	84.332	Heterocephalus_glaber_female
ENSBTAG00000004054	PAPOLA	100	97.114	ENSHGLG00000007909	-	100	97.114	Heterocephalus_glaber_female
ENSBTAG00000004054	PAPOLA	100	78.890	ENSHGLG00000007467	-	100	78.890	Heterocephalus_glaber_female
ENSBTAG00000004054	PAPOLA	100	96.970	ENSHGLG00100017273	PAPOLA	100	96.970	Heterocephalus_glaber_male
ENSBTAG00000004054	PAPOLA	100	68.401	ENSIPUG00000005919	papola	100	67.389	Ictalurus_punctatus
ENSBTAG00000004054	PAPOLA	100	98.557	ENSSTOG00000011471	PAPOLA	100	98.557	Ictidomys_tridecemlineatus
ENSBTAG00000004054	PAPOLA	99	97.246	ENSJJAG00000024340	Papola	100	97.246	Jaculus_jaculus
ENSBTAG00000004054	PAPOLA	99	77.341	ENSLACG00000018136	PAPOLA	99	77.341	Latimeria_chalumnae
ENSBTAG00000004054	PAPOLA	99	66.086	ENSLOCG00000008632	papola	99	66.577	Lepisosteus_oculatus
ENSBTAG00000004054	PAPOLA	99	96.739	ENSLAFG00000000946	PAPOLA	99	96.739	Loxodonta_africana
ENSBTAG00000004054	PAPOLA	100	97.514	ENSMFAG00000001792	PAPOLA	99	99.076	Macaca_fascicularis
ENSBTAG00000004054	PAPOLA	100	97.450	ENSMMUG00000018610	PAPOLA	100	97.450	Macaca_mulatta
ENSBTAG00000004054	PAPOLA	100	97.514	ENSMNEG00000043747	PAPOLA	100	97.798	Macaca_nemestrina
ENSBTAG00000004054	PAPOLA	100	97.514	ENSMLEG00000032066	PAPOLA	100	97.514	Mandrillus_leucophaeus
ENSBTAG00000004054	PAPOLA	84	89.550	ENSMGAG00000013228	-	100	89.211	Meleagris_gallopavo
ENSBTAG00000004054	PAPOLA	100	97.691	ENSMAUG00000017178	Papola	100	97.691	Mesocricetus_auratus
ENSBTAG00000004054	PAPOLA	100	98.512	ENSMICG00000010347	PAPOLA	100	98.512	Microcebus_murinus
ENSBTAG00000004054	PAPOLA	100	97.980	ENSMOCG00000021670	Papola	100	97.980	Microtus_ochrogaster
ENSBTAG00000004054	PAPOLA	100	96.482	ENSMODG00000012887	-	100	96.482	Monodelphis_domestica
ENSBTAG00000004054	PAPOLA	99	81.667	ENSMODG00000001969	-	99	81.667	Monodelphis_domestica
ENSBTAG00000004054	PAPOLA	100	96.970	MGP_CAROLIEiJ_G0018093	Papola	100	96.970	Mus_caroli
ENSBTAG00000004054	PAPOLA	100	97.258	ENSMUSG00000021111	Papola	100	97.258	Mus_musculus
ENSBTAG00000004054	PAPOLA	100	97.258	MGP_PahariEiJ_G0029850	Papola	100	97.258	Mus_pahari
ENSBTAG00000004054	PAPOLA	100	97.403	MGP_SPRETEiJ_G0018943	Papola	100	97.403	Mus_spretus
ENSBTAG00000004054	PAPOLA	100	98.917	ENSMPUG00000003054	PAPOLA	100	98.917	Mustela_putorius_furo
ENSBTAG00000004054	PAPOLA	100	96.482	ENSMLUG00000010922	PAPOLA	100	96.482	Myotis_lucifugus
ENSBTAG00000004054	PAPOLA	100	97.258	ENSNGAG00000022172	Papola	100	97.258	Nannospalax_galili
ENSBTAG00000004054	PAPOLA	99	92.390	ENSNLEG00000000625	PAPOLA	100	92.287	Nomascus_leucogenys
ENSBTAG00000004054	PAPOLA	67	90.152	ENSMEUG00000007831	-	74	89.764	Notamacropus_eugenii
ENSBTAG00000004054	PAPOLA	97	91.956	ENSOPRG00000007625	PAPOLA	100	91.956	Ochotona_princeps
ENSBTAG00000004054	PAPOLA	69	54.202	ENSONIG00000001062	-	99	53.239	Oreochromis_niloticus
ENSBTAG00000004054	PAPOLA	99	96.816	ENSOANG00000013812	PAPOLA	99	96.816	Ornithorhynchus_anatinus
ENSBTAG00000004054	PAPOLA	99	95.115	ENSOCUG00000011531	PAPOLA	99	95.115	Oryctolagus_cuniculus
ENSBTAG00000004054	PAPOLA	100	98.108	ENSOGAG00000004611	PAPOLA	100	98.108	Otolemur_garnettii
ENSBTAG00000004054	PAPOLA	100	99.459	ENSOARG00000016579	-	100	99.459	Ovis_aries
ENSBTAG00000004054	PAPOLA	100	97.514	ENSPPAG00000030505	PAPOLA	100	97.514	Pan_paniscus
ENSBTAG00000004054	PAPOLA	100	98.917	ENSPPRG00000008616	PAPOLA	100	98.917	Panthera_pardus
ENSBTAG00000004054	PAPOLA	99	98.913	ENSPTIG00000018852	PAPOLA	99	98.913	Panthera_tigris_altaica
ENSBTAG00000004054	PAPOLA	100	97.514	ENSPTRG00000006704	PAPOLA	100	97.514	Pan_troglodytes
ENSBTAG00000004054	PAPOLA	100	97.514	ENSPANG00000025582	PAPOLA	100	97.514	Papio_anubis
ENSBTAG00000004054	PAPOLA	100	74.661	ENSPKIG00000014471	papola	100	69.935	Paramormyrops_kingsleyae
ENSBTAG00000004054	PAPOLA	100	93.243	ENSPSIG00000014157	PAPOLA	87	93.243	Pelodiscus_sinensis
ENSBTAG00000004054	PAPOLA	100	97.835	ENSPEMG00000000043	Papola	100	97.835	Peromyscus_maniculatus_bairdii
ENSBTAG00000004054	PAPOLA	100	96.081	ENSPCIG00000013234	PAPOLA	100	96.081	Phascolarctos_cinereus
ENSBTAG00000004054	PAPOLA	100	95.034	ENSPPYG00000006128	PAPOLA	100	95.034	Pongo_abelii
ENSBTAG00000004054	PAPOLA	89	90.549	ENSPCAG00000004199	PAPOLA	100	90.549	Procavia_capensis
ENSBTAG00000004054	PAPOLA	99	95.368	ENSPCOG00000022117	PAPOLA	99	95.368	Propithecus_coquereli
ENSBTAG00000004054	PAPOLA	100	97.294	ENSPVAG00000013925	PAPOLA	100	97.294	Pteropus_vampyrus
ENSBTAG00000004054	PAPOLA	100	72.496	ENSPNAG00000010467	papola	100	72.380	Pygocentrus_nattereri
ENSBTAG00000004054	PAPOLA	100	95.805	ENSRNOG00000004827	Papola	100	95.805	Rattus_norvegicus
ENSBTAG00000004054	PAPOLA	99	96.700	ENSRBIG00000038490	PAPOLA	100	96.700	Rhinopithecus_bieti
ENSBTAG00000004054	PAPOLA	100	97.514	ENSRROG00000025545	PAPOLA	100	97.514	Rhinopithecus_roxellana
ENSBTAG00000004054	PAPOLA	99	97.274	ENSSBOG00000024061	PAPOLA	100	97.274	Saimiri_boliviensis_boliviensis
ENSBTAG00000004054	PAPOLA	99	95.924	ENSSHAG00000015211	PAPOLA	99	95.924	Sarcophilus_harrisii
ENSBTAG00000004054	PAPOLA	100	71.135	ENSSFOG00015004431	papola	99	84.810	Scleropages_formosus
ENSBTAG00000004054	PAPOLA	98	47.661	ENSSDUG00000018247	-	97	47.076	Seriola_dumerili
ENSBTAG00000004054	PAPOLA	100	92.568	ENSSPUG00000005835	PAPOLA	100	92.568	Sphenodon_punctatus
ENSBTAG00000004054	PAPOLA	100	98.701	ENSSSCG00000002505	-	100	98.701	Sus_scrofa
ENSBTAG00000004054	PAPOLA	99	91.045	ENSTGUG00000012687	PAPOLA	99	90.489	Taeniopygia_guttata
ENSBTAG00000004054	PAPOLA	75	88.043	ENSTBEG00000000194	PAPOLA	75	88.043	Tupaia_belangeri
ENSBTAG00000004054	PAPOLA	80	98.701	ENSTTRG00000005717	PAPOLA	80	98.701	Tursiops_truncatus
ENSBTAG00000004054	PAPOLA	61	99.289	ENSUAMG00000025737	PAPOLA	98	99.289	Ursus_americanus
ENSBTAG00000004054	PAPOLA	99	98.234	ENSVPAG00000006464	PAPOLA	100	98.234	Vicugna_pacos
ENSBTAG00000004054	PAPOLA	100	98.701	ENSVVUG00000028340	PAPOLA	100	98.701	Vulpes_vulpes
ENSBTAG00000004054	PAPOLA	100	83.627	ENSXETG00000013949	papola	100	83.627	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000287	magnesium ion binding	15328606.	IDA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0004652	polynucleotide adenylyltransferase activity	15328606.	IDA	Function
GO:0005524	ATP binding	15328606.	IDA	Function
GO:0006378	mRNA polyadenylation	-	ISS	Process
GO:0030145	manganese ion binding	15328606.	IDA	Function
GO:0031440	regulation of mRNA 3'-end processing	-	ISS	Process
GO:0043631	RNA polyadenylation	15328606.	IDA	Process